Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022090.1

Orthogroup ID

OG0004120

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2570

Gene Structure 2570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022090.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1090 bp

atttagggttagggttacggccgatgggatttgtcggttgcggcgatttttctcggtgatgaccggaggccgatgtcacgggaagaagaagaagatgatgggtaggggtgcggacggaggttgcggcaccgaggagaagccttgcccgatttctagggttccgcccaagattccggcgactctgccggaaattcctaaaaagtcggttggggttgatttgtattctcaggccaggaaggccttgtgtgagcggtcgccgtttgatgtggttgaggacgtctcagcctcagctgctgctccttcttcttcttcctcgagtgtggtccccaccaccttgccgagggggttggctagcttcttgtccaggcaatctgatagccggaagcggcacaagaagtcgcattcggcgtcggataagaagcattcccggcagagtgagaagttgaaggggtctagtgtgtgggcagagacagaggagtactttagacccttgacattgcctgatattgaagccttagctgaggtatctgagcttagtaaggtagctgctactaagtgtttttcgattccgaatttgggaaatattcccgagctgaatggaaatgaaaatgtgaatgtgggacttgttttcggtgaggagtgtgtctgtggtcgtaattcgaatgagactgtaaacggtggcaatgctaatgaggttgccgccgaggttgatggtgggaatgctagtgaggttgtttgcaaggatgagattgtgaatggcgggaatgctagtgaggttgttgtcaaggatgagaatgcagatgatgggagtggcaattcggatgtagttgaaaaggttgatgagaatgacggaaatgaaaatggggctgtggaagaggaggacaagacggagcagaatgggcagtcgatggaaattgatagtggtttgcctgaagaggaagaaaaaggctgttctgtttcggattctcccaggggtattgagtggcttttaggttatagaaacaagacttctttagcgacagagcgcccttcaaagaagcgaaaggttcttggtgctgatgcagggttggagaaagtcttaagtgcttct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000785 GO:0001067 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005886 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008289 GO:0008757 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009987 GO:0010093 GO:0010314 GO:0010468 GO:0010556 GO:0016020 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0035091 GO:0036211 GO:0042054 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048580 GO:0048608 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051568 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140096 GO:1901363 GO:1901564 GO:1901981 GO:1903506 GO:1905392 GO:1905393 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD_2 zf-HC5HC2H_2

Protein Analysis

363

Amino Acids

38.76

Weight (kDa)

5.31

Isoelectric Point (pI)

49.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77800 AT1G77800 AT1G77800 AT1G77800 AT1G77800 AT1G77800 AT1G77800
fragaria_vesca	FvH4_5g38940 FvH4_5g38940 FvH4_5g38940
malus_domestica	MD08G1173200.v1.1 MD15G1358500.v1.1
prunus_persica	Prupe.1G506100_v2.0.a1 Prupe.1G506100_v2.0.a1 Prupe.1G506100_v2.0.a1
pyrus_communis	pycom08g14770 pycom08g14780 pycom15g32090
rosa_chinensis	RchiOBHm_Chr7g0240911
rosa_laevigata	RLG00000000614
rosa_multiflora	Rmu_co8250701.1_g000001 Rmu_co8280389.1_g000001 Rmu_sc0002313.1_g000001 Rmu_sc0004821.1_g000023 Rmu_sc0022090.1_g000001
rosa_roxburghii	Rroxscaffold_3G00219430
rosa_rugosa	Rorug07G0340000
rosa_samantha	Rh7AG494500 Rh7BG466200 Rh7CG512700 Rh7DG479500
rosa_wichuraiana	Rw0G010670 Rw7G041830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	280
AccB1I	GGYRCC	1 cut(s)	126
AccBSI	CCGCTC	1 cut(s)	251
AciI	CCGC	8 cut(s)	41, 111, 124, 162, 251, 386, 700, 760
AcoI	YGGCCR	1 cut(s)	19
AcsI	RAATTY	2 cut(s)	190, 572
AcuI	CTGAAG	1 cut(s)	952
AcyI	GRCGYC	2 cut(s)	277, 408
AfaI	GTAC	1 cut(s)	480
AfiI	CCNNNNNNNGG	2 cut(s)	340, 576
AflII	CTTAAG	1 cut(s)	1079
AgsI	TTSAA	4 cut(s)	446, 510, 831, 1033
AjnI	CCWGG	3 cut(s)	231, 363, 969
AluBI	AGCT	6 cut(s)	291, 355, 519, 533, 546, 593
AluI	AGCT	6 cut(s)	291, 355, 519, 533, 546, 593
Alw26I	GTCTC	3 cut(s)	284, 462, 660
AlwNI	CAGNNNCTG	1 cut(s)	294
Ama87I	CYCGRG	2 cut(s)	314, 588
AoxI	GGCC	4 cut(s)	19, 68, 229, 238
ApeKI	GCWGC	3 cut(s)	291, 294, 546
ApoI	RAATTY	2 cut(s)	190, 572
AspLEI	GCGC	1 cut(s)	1027
AspS9I	GGNCC	1 cut(s)	323
AsuC2I	CCSGG	1 cut(s)	428
AsuHPI	GGTGA	2 cut(s)	68, 645
AsuII	TTCGAA	1 cut(s)	660
AsuNHI	GCTAGC	1 cut(s)	351
AvaI	CYCGRG	2 cut(s)	314, 588
AvaII	GGWCC	1 cut(s)	323
BanI	GGYRCC	1 cut(s)	126
BbvCI	CCTCAGC	2 cut(s)	287, 520
BbvI	GCAGC	3 cut(s)	278, 281, 533
BccI	CCATC	5 cut(s)	18, 92, 705, 798, 902
BceAI	ACGGC	2 cut(s)	34, 242
BciT130I	CCWGG	3 cut(s)	233, 365, 971
BcnI	CCSGG	1 cut(s)	428
BcoDI	GTCTC	3 cut(s)	284, 462, 660
BfaI	CTAG	5 cut(s)	154, 352, 454, 724, 769
BfoI	RGCGCY	1 cut(s)	1028
BfrI	CTTAAG	1 cut(s)	1079
BglI	GCCNNNNNGGC	1 cut(s)	237
BisI	GCNGC	7 cut(s)	42, 125, 292, 295, 387, 547, 700
BlsI	GCNGC	7 cut(s)	43, 126, 293, 296, 388, 548, 701
BmcAI	AGTACT	1 cut(s)	480
Bme1390I	CCNGG	4 cut(s)	233, 365, 428, 971
Bme18I	GGWCC	1 cut(s)	323
BmeT110I	CYCGRG	2 cut(s)	314, 588
BmgT120I	GGNCC	1 cut(s)	323
BmiI	GGNNCC	3 cut(s)	128, 160, 325
BmrFI	CCNGG	4 cut(s)	233, 365, 428, 971
BmsI	GCATC	1 cut(s)	1049
BmtI	GCTAGC	1 cut(s)	355
BplI	GAGNNNNNCTC	2 cut(s)	264, 296
Bpu10I	CCTNAGC	3 cut(s)	287, 515, 520
Bpu14I	TTCGAA	1 cut(s)	660
BpuMI	CCSGG	1 cut(s)	428
BsaHI	GRCGYC	2 cut(s)	277, 408
BsaJI	CCNNGG	5 cut(s)	130, 339, 703, 969, 970
BsaWI	WCCGGW	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	2 cut(s)	340, 576
Bse3DI	GCAATG	2 cut(s)	495, 689
BseBI	CCWGG	3 cut(s)	233, 365, 971
BseDI	CCNNGG	5 cut(s)	130, 339, 703, 969, 970
BseGI	GGATG	3 cut(s)	749, 794, 827
BseLI	CCNNNNNNNGG	2 cut(s)	340, 576
BseMI	GCAATG	2 cut(s)	495, 689
BseMII	CTCAG	5 cut(s)	240, 295, 301, 511, 520
BseRI	GAGGAG	4 cut(s)	147, 489, 651, 891
BseX3I	CGGCCG	1 cut(s)	19
BseXI	GCAGC	3 cut(s)	278, 281, 533
Bsh1285I	CGRYCG	2 cut(s)	22, 255
BshFI	GGCC	4 cut(s)	21, 70, 231, 240
BshNI	GGYRCC	1 cut(s)	126
BsiEI	CGRYCG	2 cut(s)	22, 255
BsiHKCI	CYCGRG	2 cut(s)	314, 588
BsiSI	CCGG	5 cut(s)	64, 174, 186, 380, 428
BslFI	GGGAC	2 cut(s)	309, 634
BslI	CCNNNNNNNGG	2 cut(s)	340, 576
BsmAI	GTCTC	3 cut(s)	284, 462, 660
BsmBI	CGTCTC	1 cut(s)	284
BsmFI	GGGAC	2 cut(s)	309, 634
BsmI	GAATGC	5 cut(s)	401, 422, 725, 770, 800
BsnI	GGCC	4 cut(s)	21, 70, 231, 240
BsoBI	CYCGRG	2 cut(s)	314, 588
Bsp119I	TTCGAA	1 cut(s)	660
BspACI	CCGC	8 cut(s)	41, 111, 124, 162, 251, 386, 700, 760
BspANI	GGCC	4 cut(s)	21, 70, 231, 240
BspCNI	CTCAG	5 cut(s)	239, 294, 300, 512, 521
BspLI	GGNNCC	3 cut(s)	128, 160, 325
BspOI	GCTAGC	1 cut(s)	355
BspT104I	TTCGAA	1 cut(s)	660
BspT107I	GGYRCC	1 cut(s)	126
BspTI	CTTAAG	1 cut(s)	1079
BsrBI	CCGCTC	1 cut(s)	251
BsrDI	GCAATG	2 cut(s)	495, 689
BssECI	CCNNGG	5 cut(s)	130, 339, 703, 969, 970
BssNI	GRCGYC	2 cut(s)	277, 408
Bst2UI	CCWGG	3 cut(s)	233, 365, 971
Bst4CI	ACNGT	2 cut(s)	671, 678
Bst6I	CTCTTC	2 cut(s)	868, 928
BstACI	GRCGYC	2 cut(s)	277, 408
BstAFI	CTTAAG	1 cut(s)	1079
BstBI	TTCGAA	1 cut(s)	660
BstC8I	GCNNGC	1 cut(s)	353
BstDEI	CTNAG	8 cut(s)	226, 281, 287, 515, 520, 529, 534, 553
BstENI	CCTNNNNNAGG	1 cut(s)	338
BstF5I	GGATG	3 cut(s)	749, 794, 827
BstH2I	RGCGCY	1 cut(s)	1028
BstHHI	GCGC	1 cut(s)	1027
BstMAI	GTCTC	3 cut(s)	284, 462, 660
BstMCI	CGRYCG	2 cut(s)	22, 255
BstMWI	GCNNNNNNNGC	4 cut(s)	237, 291, 428, 899
BstNI	CCWGG	3 cut(s)	233, 365, 971
BstSCI	CCNGG	4 cut(s)	231, 363, 426, 969
BstV1I	GCAGC	3 cut(s)	278, 281, 533
BstZI	CGGCCG	1 cut(s)	19
BsuRI	GGCC	4 cut(s)	21, 70, 231, 240
BtsCI	GGATG	3 cut(s)	749, 794, 827
Cac8I	GCNNGC	1 cut(s)	353
CaiI	CAGNNNCTG	1 cut(s)	294
CfoI	GCGC	1 cut(s)	1027
Cfr13I	GGNCC	1 cut(s)	323
CseI	GACGC	1 cut(s)	397
Csp6I	GTAC	1 cut(s)	479
CviQI	GTAC	1 cut(s)	479
DdeI	CTNAG	8 cut(s)	226, 281, 287, 515, 520, 529, 534, 553
EaeI	YGGCCR	1 cut(s)	19
EagI	CGGCCG	1 cut(s)	19
Eam1104I	CTCTTC	2 cut(s)	868, 928
EarI	CTCTTC	2 cut(s)	868, 928
EciI	GGCGGA	1 cut(s)	151
EclXI	CGGCCG	1 cut(s)	19
Eco147I	AGGCCT	1 cut(s)	240
Eco47I	GGWCC	1 cut(s)	323
Eco52I	CGGCCG	1 cut(s)	19
Eco57I	CTGAAG	1 cut(s)	952
Eco88I	CYCGRG	2 cut(s)	314, 588
EcoNI	CCTNNNNNAGG	1 cut(s)	338
EcoRII	CCWGG	3 cut(s)	231, 363, 969
Esp3I	CGTCTC	1 cut(s)	284
FaiI	YATR	1 cut(s)	997
FaqI	GGGAC	2 cut(s)	309, 634
FauI	CCCGC	1 cut(s)	753
Fnu4HI	GCNGC	7 cut(s)	42, 125, 292, 295, 387, 547, 700
FokI	GGATG	3 cut(s)	756, 801, 834
Fsp4HI	GCNGC	7 cut(s)	42, 125, 292, 295, 387, 547, 700
FspBI	CTAG	5 cut(s)	154, 352, 454, 724, 769
GlaI	GCGC	1 cut(s)	1026
GluI	GCNGC	7 cut(s)	42, 125, 292, 295, 387, 547, 700
HaeII	RGCGCY	1 cut(s)	1028
HaeIII	GGCC	4 cut(s)	21, 70, 231, 240
HapII	CCGG	5 cut(s)	64, 174, 186, 380, 428
HgaI	GACGC	1 cut(s)	397
HhaI	GCGC	1 cut(s)	1027
Hin1I	GRCGYC	2 cut(s)	277, 408
Hin6I	GCGC	1 cut(s)	1025
HinP1I	GCGC	1 cut(s)	1025
HinfI	GANTC	4 cut(s)	170, 179, 566, 963
HpaII	CCGG	5 cut(s)	64, 174, 186, 380, 428
HphI	GGTGA	2 cut(s)	68, 645
Hpy166II	GTNNAC	1 cut(s)	674
Hpy188I	TCNGA	6 cut(s)	374, 413, 530, 571, 821, 962
Hpy188III	TCNNGA	1 cut(s)	588
Hpy8I	GTNNAC	1 cut(s)	674
Hpy99I	CGWCG	1 cut(s)	413
HpyAV	CCTTC	4 cut(s)	230, 310, 440, 1039
HpyCH4III	ACNGT	2 cut(s)	671, 678
HpyCH4IV	ACGT	1 cut(s)	277
HpyCH4V	TGCA	3 cut(s)	739, 798, 1062
HpyF10VI	GCNNNNNNNGC	4 cut(s)	237, 291, 428, 899
HpyF3I	CTNAG	8 cut(s)	226, 281, 287, 515, 520, 529, 534, 553
HpySE526I	ACGT	1 cut(s)	277
Hsp92I	GRCGYC	2 cut(s)	277, 408
HspAI	GCGC	1 cut(s)	1025
LmnI	GCTCC	2 cut(s)	302, 890
Lsp1109I	GCAGC	3 cut(s)	278, 281, 533
LweI	GCATC	1 cut(s)	1049
MaeI	CTAG	5 cut(s)	154, 352, 454, 724, 769
MaeII	ACGT	1 cut(s)	277
MaeIII	GTNAC	2 cut(s)	14, 75
MbiI	CCGCTC	1 cut(s)	251
MluCI	AATT	5 cut(s)	190, 572, 656, 815, 913
MlyI	GAGTC	1 cut(s)	173
MmeI	TCCRAC	2 cut(s)	391, 1048
MseI	TTAA	1 cut(s)	1080
MspA1I	CMGCKG	1 cut(s)	291
MspCI	CTTAAG	1 cut(s)	1079
MspI	CCGG	5 cut(s)	64, 174, 186, 380, 428
MspR9I	CCNGG	4 cut(s)	233, 365, 428, 971
Mva1269I	GAATGC	5 cut(s)	401, 422, 725, 770, 800
MvaI	CCWGG	3 cut(s)	233, 365, 971
MwoI	GCNNNNNNNGC	4 cut(s)	237, 291, 428, 899
NciI	CCSGG	1 cut(s)	428
NheI	GCTAGC	1 cut(s)	351
NlaIV	GGNNCC	3 cut(s)	128, 160, 325
NmeAIII	GCCGAG	2 cut(s)	364, 728
NmuCI	GTSAC	1 cut(s)	75
NspV	TTCGAA	1 cut(s)	660
PaeR7I	CTCGAG	1 cut(s)	314
PasI	CCCWGGG	1 cut(s)	970
PceI	AGGCCT	1 cut(s)	240
PcsI	WCGNNNNNNNCGW	2 cut(s)	41, 405
PctI	GAATGC	5 cut(s)	401, 422, 725, 770, 800
PfeI	GAWTC	3 cut(s)	170, 566, 963
PkrI	GCNGC	7 cut(s)	43, 126, 293, 296, 388, 548, 701
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
Psp6I	CCWGG	3 cut(s)	231, 363, 969
PspGI	CCWGG	3 cut(s)	231, 363, 969
PspN4I	GGNNCC	3 cut(s)	128, 160, 325
PspPI	GGNCC	1 cut(s)	323
PspXI	VCTCGAGB	1 cut(s)	314
PstNI	CAGNNNCTG	1 cut(s)	294
PvuII	CAGCTG	1 cut(s)	291
RsaI	GTAC	1 cut(s)	480
RsaNI	GTAC	1 cut(s)	479
SaqAI	TTAA	1 cut(s)	1080
SatI	GCNGC	7 cut(s)	42, 125, 292, 295, 387, 547, 700
Sau96I	GGNCC	1 cut(s)	323
ScaI	AGTACT	1 cut(s)	480
SchI	GAGTC	1 cut(s)	173
ScrFI	CCNGG	4 cut(s)	233, 365, 428, 971
SfaNI	GCATC	1 cut(s)	1049
SfiI	GGCCNNNNNGGCC	1 cut(s)	237
Sfr274I	CTCGAG	1 cut(s)	314
SfuI	TTCGAA	1 cut(s)	660
SinI	GGWCC	1 cut(s)	323
SlaI	CTCGAG	1 cut(s)	314
SmlI	CTYRAG	2 cut(s)	314, 1079
SmoI	CTYRAG	2 cut(s)	314, 1079
Sse9I	AATT	5 cut(s)	190, 572, 656, 815, 913
SseBI	AGGCCT	1 cut(s)	240
SsiI	CCGC	8 cut(s)	41, 111, 124, 162, 251, 386, 700, 760
SspI	AATATT	1 cut(s)	584
SspMI	CTAG	5 cut(s)	154, 352, 454, 724, 769
StuI	AGGCCT	1 cut(s)	240
StyD4I	CCNGG	4 cut(s)	231, 363, 426, 969
TaaI	ACNGT	2 cut(s)	671, 678
TaiI	ACGT	1 cut(s)	280
TaqI	TCGA	4 cut(s)	315, 564, 660, 906
TasI	AATT	5 cut(s)	190, 572, 656, 815, 913
TatI	WGTACW	1 cut(s)	478
TauI	GCSGC	4 cut(s)	44, 127, 389, 702
TfiI	GAWTC	3 cut(s)	170, 566, 963
Tru1I	TTAA	1 cut(s)	1080
Tru9I	TTAA	1 cut(s)	1080
TseFI	GTSAC	1 cut(s)	75
TseI	GCWGC	3 cut(s)	291, 294, 546
Tsp45I	GTSAC	1 cut(s)	75
TspDTI	ATGAA	2 cut(s)	619, 871
TspGWI	ACGGA	3 cut(s)	130, 865, 903
Vha464I	CTTAAG	1 cut(s)	1079
VpaK11BI	GGWCC	1 cut(s)	323
XagI	CCTNNNNNAGG	1 cut(s)	338
XapI	RAATTY	2 cut(s)	190, 572
XhoI	CTCGAG	1 cut(s)	314
XspI	CTAG	5 cut(s)	154, 352, 454, 724, 769
ZraI	GACGTC	1 cut(s)	278
ZrmI	AGTACT	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.