MD15G1358500.v1.1

PHD-zinc-finger like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0004120
Physical Location & Seq
Forward (+)
43231192 .. 43241672
10481 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1358500.v1.1.491

Sequence Viewer

Length: 4473 bp
ATGACCGGAGGCCGATGTCACGAGAAGAAGATGATGGGTAGGGGTGCGGACGGAGGTTGCGGCACCGAGGAGAGGCCTTGCCCAATTCCTAGGGTTCCGCCCAAAATTCCGGCGACTCAGCCGGAAATTCCCGAGAAGTCGTCGAGCTCTTTGAGAATTGATTTTTTCTCACAGGCTAAGAAGGCGTTGTGTGAGCGCTCGCCTTTTGATGTTGCCGAGGACGGCTCAGCTTCGAGCCTGCCCACCACCTTGCCTAGGGGCTTGGCTAGCTTTTTGTCGAGGCAGTCGGACAGTCGGAAGCGGCATAAGAAGTCGCATGCGGGTGCGGAGAAGAAGAGTTCTCGGCAGAGCGAGAGGTCCCGGTGTAATAACATTTGGGTGGAGACTGAGGATTACTTTAGACCCTTGACATTGCCTGATATCGACGCTTTATTTCAGGTATCTGAGCTTAGTAATTTAGCTTCTCGCAAGTGTTTTTCGATTCCGGTTGTTGGAAATGTTCCAAGGCGGAATGCAAATGAGAACATTAATGCAAATGGAGTTGCTGTCAGTGAGGACGATGCAACTGGTGGCAAGTTAAATAGCGTTGTTGTCAAGGATGAGATTATAAATGGGGGGAATGCAAATGATTCCCATGTTAAGAATGAGAATGCAAACGATGGGGATGCTAATGATGGTGTCGTCAAGGCCGAGTGTGCGAATGATGGGAACGCCAATTCAGTTTTAGTTGAAAACGCGAATGAGAATGATGGAAATGAAAATGGGGTTGTCGAAGACGAGGCCAAGACAGAGAAGGATGAGCATTCCATGGAAATTGATTGTGTGAGAGCTTCTGGGTTGCCTGAGGGGGGAAAGGGTAGTTTAAATTCATATTCTCCCAGTGGTGTTGAGTGGCTTTTAGGATACAGGAATAAGATTTCTTTAACATCAGAGCGCCCGTCAAAGAAGCGGAAGGTTCTGGGTGCTGATGCAGGGTTGGAGAAAGTGCTAATAGCCTCTCCATGTGATGGGAGTTCATCTTTATGCCATTTCTGCTGCATGGGTGATGCAGGCAAAGAGTCAAACCGATTGATTGTCTGTAGTTCTTGTAAGGTTGGAGTTCATCAGAAGTGCTATGGAGTGCTAGAGGATGTAGATGCATCATGGTTATGCTCTTGGTGTAAGCAGAAGACGGATACTAGTGATTCAGTCAAGCCTTGTGTGCTTTGCTCAAAGAAGGGTGGCGCTTTAAAGCCGGTTCTTAAGAGTGTTGAAAATGGTGGATCTATGGATTTTGCTCACTTGTTTTGTTGTCAGTGGATGCCTGAGGTTTATATAGAGGACATAGCAAAGATGGAGCCTATCATAAATGTTGGAGGAATAACTGAAACCCGCAGAAAGTTAATATGTAACATATGCAAGGTGAAGTGGGGCGCTTGTGTTCGATGCAGTCATGGAACTTGCAGAACTTCGTTTCATCCATTATGTGCAAGGGAGGCAAGACAGAGAATGGAAATTTGGGGAAAATATGGGTGCGATAATGTTGAGCTGAGGGCATTTTGTTCAAAGCACTCAGAAGTACCAGATAACAGCAACAGTCAATTGGTATCTCCCACTGTCTCAGCTGACAAGAACTCAAATGTCTCCAACCATCTTCCGATGGCATTGTCGGAAAACAAATTAAACAAGTTAAGGATTGGCCCTACAAATGGTGATAAAACTGCAGTTCCTCCAGATATTGTTTCTGACAAATCGGGTGATAGTGAATCACAGGAGATAGTGTTTCCTGTTCCAAGATTAAATTCTGGGCTGACATCAGACGGTGGTGAAGCACAGCCGATGATTGATGCAGGGGCATTTGAGAGAAGCAAAGAGGATGTTAATGCATCTAATTCCCTTAAATTTTCTCTGATTTTGAAGAAGCTGATTGATAGCGGAAAAGTTAATGTGAAGGATGTGGCATTGGACATTGGCCTCTCACCTGATTCCTTATCTGCTTCACTTGCTGATCATACCATGGCGCCTGATGTGCAAAGCAGAATAGTTAAATGGCTTAGAGACCATTCTAACTTGGATTTAAAGCAGAAAAATGGGAAAATGAAATTGAGATCAGCAATTTCATCCATAACTGAGTTTGGGGGTTCTGATGGTTCTGAAGCTGCTTCATTATCAGATTCTGATATGGCAGATGTAGCTGTTAAGTCAGTACCCCCACGGAGAAGAACCAAAAGTAGTATTAGGATTTTGAAGGATAAAAAAGTAATAAGCTCATCCGAGGGGACCTGTAATGACAATGGCACATTGGACAAGATTAAGGTTGATCAACCCATCATTGATGAACAGGAAAATTTAAGTAAAGCGTCTGTTCCTGATCCTGTTGAGAAGAATCTGACGGAGGCCAATGTGGTTCAAAATTCTTTGCTGACACATTCACCCAGATCAGAAGGTCTTTCATCTAAACCCTTGAATTGCAGCCCTTTGCAAATGGGTCAAGAGCAGTTGGCTACTATTCCTTTGCAGGGCACCTCAGTCGTTCCTGAATTGAATAAATCTGTGACTGAAGAAGTTCCTGGTTGTTATGTCCATCCGTATATTGAAAATAAGTTGTTGGAGATGCAGACCAGGGTGTCCTTAGAAAATCCAATATACGGTTCAAGTGATGGAGTAATCTCACGTATGGAGGCATCTTCTCATGCCAGTGTTTGCTGTAATCACCAAAATAAGCATCCAAAATGCTGTGATATGATATGTAAGTCTGATGAGATGAATCTAGAACAGTTGGTAAAGGCTCAAGAAATGGGAGTTCTAGAAATGTCTCCAGAGGATGAAGTGGAAGGAGAACTCATTTATTACCAGCATAGGTTGCTCAACAATGCAATTGCAAGAAAGCATTTTACTGATAATTTAGTATCTTATGTTGCAAAGAGTCTTCCATTGGAGATTGATGCAGCACGGAGGCAAAAATGGGATGCTGTACTTGTTAACCAGTATCTTTGTGAGCTTAGGGAGGCAAAGAAGCAGGGTAGGAAGGAGAGACGGCATAAAGAAGCCCAGGCTGTGCTAGCAGCTGCAACCGCTGCTGCTGCAGCCTCTTCTAGGGTTTCATCATTTAGGAAAGATGCCCTTGACGAATCTTCCCATCAGGAGAATGTGACGAAGTTGAATACTTCTAGTGGGAGGTCCAGTTTTTCCTCACAGATGATGCCGCGGCCGAAAGAGACATTTCCGAGAGTGGCTGTTCCCAGGATTTCGTTGGAAAAACACTCTGGTTTTGTTCAATCAGTCACTGATTTTTCCAAAGAACATCCTAGATCTTGTGACATCTGCAGACGTTCTGAAACGTTGTTAAACCCGATCTTAGTCTGTTCTAGTTGCAAGGTTGCCATTCACTTGGATTGCTATCGTAGAACTAGAGAATCCGCAGGTCCATGGTATTGTGAATTATGTGAAGAACTGTCATCATCTCGTGGAGCTGGTGCACCTGTCAATTTTTGGGAGAAAGATCATTTTGTTGCAGAATGTGGTTTATGTGGTGGAAAAACAGGTGCATTTAGGAAGTGTTCTGATGGTAAATGGGTTCATGCCTTCTGTGCCGAGTGGATCTTCGAGTCAACATTCCGAAGGGGGCAAGTATCTCCCATTGAGGGAATGGAGACGATTTCTAAGGGGCTGGATTTTTGTGTTAGCTGCCGACGCAAATGTGGTGTCTGTATAAAATGTAACTATGGCAATTGTCAGTCAACATTTCATCCCTCATGTGCTAGAAGTTCTGGTTTTTACATAAATGTGAAAACTGTCGGTGGAAAGATCCAACACAAGGCATACTGTGAAAAGCATAGTGTTGAGCAGAGGACAAAGGCTGAAACACAAAAACATGGAACTGAGGAGTTAGAGAACCTCAGGAAAATCAGAGTTGAACTAGAGAGGGTACGCCTACTTTGTGAAAGAATCGTCAAACGAGAAAAAGTAAAGAGGGAACTGCTCATTTGTTCACATGACCTTCTTGCTGTGAGGAGAGATCACGTTGCTCGGTCCGTGCTTGTTAATAGTCCTTTCTTGCCACCTAATGTTAGTTCTGAATCAGCTACAACATCTCTTAATGACGTGACTGTGGATAGTACAATTTCTGTGAAGCGGCGAAGAGTTCCTATAACTATTGACAACGACCAGAAAACAGATGATGACAGCTCCACATCGCAAAACCATTCTACCAAAAGCCTTCCGGAGAGGCCACAACTTTCTGAGAAACAGATTCCATGCAGAGCTTCAAGTGCTGCCACCTGTAATCTTTCGGAAGATGGAGGATGGAGGTCAAAATCTAGGAAGCATGCTGAGACATTTGAGAAAGAACTGGTAATGACATCGGATCAAGCATCGATGAAAAATATGAAATTACCGAAAGGATATGCATATGTTCCTGCTGATTGCATTCCCAACGAGAAGCAGATCAACCAGGATTCTTGTTCTGGTGAACAACCACAAGGAGATGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000785 GO:0001067 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005886 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008289 GO:0008757 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009987 GO:0010093 GO:0010314 GO:0010468 GO:0010556 GO:0016020 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0035091 GO:0036211 GO:0042054 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048580 GO:0048608 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051568 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140096 GO:1901363 GO:1901564 GO:1901981 GO:1903506 GO:1905392 GO:1905393 GO:2000026 GO:2000112 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD_2 zf-HC5HC2H_2

Protein Analysis

1491

Amino Acids

163.54

Weight (kDa)

7.72

Isoelectric Point (pI)

49.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD_2 PF13831 355 - 388 2.6e-09 PHD-finger
zf-HC5HC2H_2 PF13832 399 - 517 5.7e-21 PHD-zinc-finger like domain
zf-HC5HC2H PF13771 427 - 518 2.7e-18 PHD-like zinc-binding domain
PHD_2 PF13831 1110 - 1143 2.9e-08 PHD-finger
zf-HC5HC2H_2 PF13832 1166 - 1272 1.4e-18 PHD-zinc-finger like domain
zf-HC5HC2H PF13771 1187 - 1273 4.4e-12 PHD-like zinc-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 608
AasI GACNNNNNNGTC 1 cut(s) 2605
Acc36I ACCTGC 1 cut(s) 3392
AccB1I GGYRCC 3 cut(s) 62, 1999, 2501
AccB7I CCANNNNNTGG 1 cut(s) 1007
AccII CGCG 2 cut(s) 737, 3187
AccIII TCCGGA 1 cut(s) 4201
AclI AACGTT 1 cut(s) 3320
AclWI GGATC 5 cut(s) 1270, 2345, 3587, 3781, 4353
AcoI YGGCCR 1 cut(s) 3188
AcsI RAATTY 8 cut(s) 105, 126, 865, 1494, 1780, 1880, 2326, 2392
AcuI CTGAAG 2 cut(s) 2154, 2559
AcyI GRCGYC 1 cut(s) 2000
AfaI GTAC 5 cut(s) 1560, 2187, 2955, 3909, 4099
AfeI AGCGCT 1 cut(s) 197
AflII CTTAAG 1 cut(s) 1241
AhlI ACTAGT 1 cut(s) 1178
AjiI CACGTC 1 cut(s) 4084
AjnI CCWGG 5 cut(s) 2548, 2600, 3030, 3221, 4431
AjuI GAANNNNNNNTTGG 6 cut(s) 1480, 1512, 1765, 1797, 2614, 2646
Alw21I GWGCWC 2 cut(s) 149, 3460
Alw26I GTCTC 9 cut(s) 377, 1603, 1627, 2031, 2799, 3007, 3191, 3626, 4307
Alw44I GTGCAC 1 cut(s) 3456
AlwI GGATC 5 cut(s) 1270, 2345, 3587, 3781, 4353
AlwNI CAGNNNCTG 2 cut(s) 2156, 3266
Ama87I CYCGRG 1 cut(s) 131
Aor13HI TCCGGA 1 cut(s) 4201
Aor51HI AGCGCT 1 cut(s) 197
AoxI GGCC 9 cut(s) 10, 74, 687, 780, 1678, 1951, 2376, 3188, 4208
ApaLI GTGCAC 1 cut(s) 3456
ApoI RAATTY 8 cut(s) 105, 126, 865, 1494, 1780, 1880, 2326, 2392
ArsI GACNNNNNNTTYG 2 cut(s) 3669, 3701
AseI ATTAAT 1 cut(s) 528
Asp700I GAANNNNTTC 1 cut(s) 2544
AspA2I CCTAGG 2 cut(s) 89, 254
AspLEI GCGC 5 cut(s) 198, 936, 1226, 1415, 2002
AspS9I GGNCC 6 cut(s) 357, 1679, 2259, 3159, 3404, 4011
AsuC2I CCSGG 1 cut(s) 361
AsuHPI GGTGA 9 cut(s) 1055, 1414, 1703, 1748, 1817, 1950, 2403, 2684, 4460
AsuNHI GCTAGC 2 cut(s) 266, 3040
AvaI CYCGRG 1 cut(s) 131
AvaII GGWCC 5 cut(s) 357, 2259, 3159, 3404, 4011
AvrII CCTAGG 2 cut(s) 89, 254
AxyI CCTNAGG 3 cut(s) 843, 1305, 3878
BaeGI GKGCMC 2 cut(s) 2504, 3460
BanI GGYRCC 3 cut(s) 62, 1999, 2501
BanII GRGCYC 1 cut(s) 149
BarI GAAGNNNNNNTAC 2 cut(s) 445, 477
BauI CACGAG 2 cut(s) 20, 3444
BbsI GAAGAC 3 cut(s) 780, 1175, 2900
Bbv12I GWGCWC 2 cut(s) 149, 3460
BbvCI CCTCAGC 1 cut(s) 1529
BceAI ACGGC 2 cut(s) 238, 3032
BcgI CGANNNNNNTGC 4 cut(s) 647, 681, 2491, 2525
BciT130I CCWGG 5 cut(s) 2550, 2602, 3032, 3223, 4433
BciVI GTATCC 2 cut(s) 896, 1168
BclI TGATCA 2 cut(s) 1987, 2299
BcnI CCSGG 1 cut(s) 361
BcoDI GTCTC 9 cut(s) 377, 1603, 1627, 2031, 2799, 3007, 3191, 3626, 4307
BcuI ACTAGT 1 cut(s) 1178
BfmI CTRYAG 4 cut(s) 1078, 1701, 3063, 3304
BfoI RGCGCY 5 cut(s) 199, 937, 1227, 1416, 2003
BfrI CTTAAG 1 cut(s) 1241
BfuAI ACCTGC 1 cut(s) 3392
BfuI GTATCC 2 cut(s) 896, 1168
BglII AGATCT 1 cut(s) 3290
BlnI CCTAGG 2 cut(s) 89, 254
BlpI GCTNAGC 1 cut(s) 226
Bme1390I CCNGG 6 cut(s) 361, 2550, 2602, 3032, 3223, 4433
Bme18I GGWCC 5 cut(s) 357, 2259, 3159, 3404, 4011
BmeT110I CYCGRG 1 cut(s) 131
BmgBI CACGTC 1 cut(s) 4084
BmgT120I GGNCC 6 cut(s) 357, 1679, 2259, 3159, 3404, 4011
BmiI GGNNCC 7 cut(s) 64, 96, 359, 1338, 2001, 2260, 2503
BmrFI CCNGG 6 cut(s) 361, 2550, 2602, 3032, 3223, 4433
BmrI ACTGGG 1 cut(s) 873
BmtI GCTAGC 2 cut(s) 270, 3044
BmuI ACTGGG 1 cut(s) 873
BpiI GAAGAC 3 cut(s) 780, 1175, 2900
BplI GAGNNNNNCTC 2 cut(s) 209, 241
BpmI CTGGAG 2 cut(s) 1695, 2781
Bpu10I CCTNAGC 2 cut(s) 1529, 2981
Bpu1102I GCTNAGC 1 cut(s) 226
BpuEI CTTGAG 1 cut(s) 2754
BpuMI CCSGG 1 cut(s) 361
Bsa29I ATCGAT 1 cut(s) 4355
BsaAI YACGTR 1 cut(s) 2654
BsaBI GATNNNNATC 1 cut(s) 3378
BsaHI GRCGYC 1 cut(s) 2000
BsaI GGTCTC 1 cut(s) 2031
BsaWI WCCGGW 3 cut(s) 5, 484, 4201
BsaXI ACNNNNNCTCC 6 cut(s) 531, 561, 1745, 1775, 3148, 3178
Bse118I RCCGGY 1 cut(s) 1234
Bse1I ACTGG 6 cut(s) 571, 879, 2676, 2965, 3162, 4335
Bse21I CCTNAGG 3 cut(s) 843, 1305, 3878
Bse3DI GCAATG 1 cut(s) 410
Bse8I GATNNNNATC 1 cut(s) 3378
BseAI TCCGGA 1 cut(s) 4201
BseBI CCWGG 5 cut(s) 2550, 2602, 3032, 3223, 4433
BseCI ATCGAT 1 cut(s) 4355
BseJI GATNNNNATC 1 cut(s) 3378
BseMI GCAATG 1 cut(s) 410
BseNI ACTGG 6 cut(s) 571, 879, 2676, 2965, 3162, 4335
BseRI GAGGAG 3 cut(s) 83, 3878, 4006
BseSI GKGCMC 2 cut(s) 2504, 3460
BseX3I CGGCCG 1 cut(s) 3188
Bsh1236I CGCG 2 cut(s) 737, 3187
Bsh1285I CGRYCG 1 cut(s) 3191
BshFI GGCC 9 cut(s) 12, 76, 689, 782, 1680, 1953, 2378, 3190, 4210
BshNI GGYRCC 3 cut(s) 62, 1999, 2501
BshVI ATCGAT 1 cut(s) 4355
BsiEI CGRYCG 1 cut(s) 3191
BsiHKAI GWGCWC 2 cut(s) 149, 3460
BsiHKCI CYCGRG 1 cut(s) 131
BsiSI CCGG 7 cut(s) 6, 110, 122, 361, 485, 1235, 4202
BslFI GGGAC 2 cut(s) 343, 2272
BsmAI GTCTC 9 cut(s) 377, 1603, 1627, 2031, 2799, 3007, 3191, 3626, 4307
BsmBI CGTCTC 2 cut(s) 3007, 3626
BsmFI GGGAC 2 cut(s) 343, 2272
BsmI GAATGC 5 cut(s) 517, 625, 655, 802, 4407
BsnI GGCC 9 cut(s) 12, 76, 689, 782, 1680, 1953, 2378, 3190, 4210
Bso31I GGTCTC 1 cut(s) 2031
BsoBI CYCGRG 1 cut(s) 131
Bsp1286I GDGCHC 3 cut(s) 149, 2504, 3460
Bsp13I TCCGGA 1 cut(s) 4201
Bsp1720I GCTNAGC 1 cut(s) 226
Bsp19I CCATGG 3 cut(s) 807, 1995, 3407
BspANI GGCC 9 cut(s) 12, 76, 689, 782, 1680, 1953, 2378, 3190, 4210
BspDI ATCGAT 1 cut(s) 4355
BspEI TCCGGA 1 cut(s) 4201
BspFNI CGCG 2 cut(s) 737, 3187
BspLI GGNNCC 7 cut(s) 64, 96, 359, 1338, 2001, 2260, 2503
BspMAI CTGCAG 3 cut(s) 1705, 3067, 3308
BspMI ACCTGC 1 cut(s) 3392
BspOI GCTAGC 2 cut(s) 270, 3044
BspPI GGATC 5 cut(s) 1270, 2345, 3587, 3781, 4353
BspT107I GGYRCC 3 cut(s) 62, 1999, 2501
BspTI CTTAAG 1 cut(s) 1241
BspTNI GGTCTC 1 cut(s) 2031
BsrDI GCAATG 1 cut(s) 410
BsrFI RCCGGY 1 cut(s) 1234
BsrI ACTGG 6 cut(s) 571, 879, 2676, 2965, 3162, 4335
BssAI RCCGGY 1 cut(s) 1234
BssNI GRCGYC 1 cut(s) 2000
BssSI CACGAG 2 cut(s) 20, 3444
BssT1I CCWWGG 6 cut(s) 89, 254, 503, 807, 1995, 3407
Bst2BI CACGAG 2 cut(s) 20, 3444
Bst2UI CCWGG 5 cut(s) 2550, 2602, 3032, 3223, 4433
Bst6I CTCTTC 3 cut(s) 329, 3076, 4114
BstACI GRCGYC 1 cut(s) 2000
BstAFI CTTAAG 1 cut(s) 1241
BstAPI GCANNNNNTGC 2 cut(s) 2842, 3056
BstBAI YACGTR 1 cut(s) 2654
BstC8I GCNNGC 7 cut(s) 200, 239, 268, 318, 1051, 3042, 4308
BstDSI CCRYGG 5 cut(s) 807, 1995, 2192, 3185, 3407
BstENI CCTNNNNNAGG 2 cut(s) 253, 3073
BstFNI CGCG 2 cut(s) 737, 3187
BstH2I RGCGCY 5 cut(s) 199, 937, 1227, 1416, 2003
BstHHI GCGC 5 cut(s) 198, 936, 1226, 1415, 2002
BstMAI GTCTC 9 cut(s) 377, 1603, 1627, 2031, 2799, 3007, 3191, 3626, 4307
BstMCI CGRYCG 1 cut(s) 3191
BstNI CCWGG 5 cut(s) 2550, 2602, 3032, 3223, 4433
BstNSI RCATGY 2 cut(s) 320, 4310
BstSCI CCNGG 6 cut(s) 359, 2548, 2600, 3030, 3221, 4431
BstSFI CTRYAG 4 cut(s) 1078, 1701, 3063, 3304
BstSLI GKGCMC 2 cut(s) 2504, 3460
BstUI CGCG 2 cut(s) 737, 3187
BstV2I GAAGAC 3 cut(s) 780, 1175, 2900
BstX2I RGATCY 4 cut(s) 1262, 3290, 3579, 3786
BstXI CCANNNNNNTGG 1 cut(s) 3370
BstYI RGATCY 4 cut(s) 1262, 3290, 3579, 3786
BstZI CGGCCG 1 cut(s) 3188
Bsu15I ATCGAT 1 cut(s) 4355
Bsu36I CCTNAGG 3 cut(s) 843, 1305, 3878
BsuI GTATCC 2 cut(s) 896, 1168
BsuRI GGCC 9 cut(s) 12, 76, 689, 782, 1680, 1953, 2378, 3190, 4210
BsuTUI ATCGAT 1 cut(s) 4355
BtgI CCRYGG 5 cut(s) 807, 1995, 2192, 3185, 3407
BtgZI GCGATG 1 cut(s) 4158
BtrI CACGTC 1 cut(s) 4084
BtsIMutI CAGTG 6 cut(s) 556, 886, 1301, 1593, 2683, 3264
BveI ACCTGC 1 cut(s) 3392
Cac8I GCNNGC 7 cut(s) 200, 239, 268, 318, 1051, 3042, 4308
CaiI CAGNNNCTG 2 cut(s) 2156, 3266
CfoI GCGC 5 cut(s) 198, 936, 1226, 1415, 2002
Cfr10I RCCGGY 1 cut(s) 1234
Cfr13I GGNCC 6 cut(s) 357, 1679, 2259, 3159, 3404, 4011
Cfr42I CCGCGG 1 cut(s) 3188
ClaI ATCGAT 1 cut(s) 4355
CpoI CGGWCCG 1 cut(s) 4011
CseI GACGC 3 cut(s) 434, 2328, 3681
Csp6I GTAC 5 cut(s) 1559, 2186, 2954, 3908, 4098
CspI CGGWCCG 1 cut(s) 4011
CviQI GTAC 5 cut(s) 1559, 2186, 2954, 3908, 4098
DinI GGCGCC 1 cut(s) 2001
DraI TTTAAA 3 cut(s) 864, 1230, 2058
DrdI GACNNNNNNGTC 1 cut(s) 2605
DseDI GACNNNNNNGTC 1 cut(s) 2605
EaeI YGGCCR 1 cut(s) 3188
EagI CGGCCG 1 cut(s) 3188
Eam1104I CTCTTC 3 cut(s) 329, 3076, 4114
EarI CTCTTC 3 cut(s) 329, 3076, 4114
EciI GGCGGA 2 cut(s) 87, 523
Ecl136II GAGCTC 1 cut(s) 147
EclXI CGGCCG 1 cut(s) 3188
Eco130I CCWWGG 6 cut(s) 89, 254, 503, 807, 1995, 3407
Eco147I AGGCCT 1 cut(s) 76
Eco24I GRGCYC 1 cut(s) 149
Eco31I GGTCTC 1 cut(s) 2031
Eco32I GATATC 1 cut(s) 421
Eco47I GGWCC 5 cut(s) 357, 2259, 3159, 3404, 4011
Eco47III AGCGCT 1 cut(s) 197
Eco52I CGGCCG 1 cut(s) 3188
Eco53kI GAGCTC 1 cut(s) 147
Eco57I CTGAAG 2 cut(s) 2154, 2559
Eco81I CCTNAGG 3 cut(s) 843, 1305, 3878
Eco88I CYCGRG 1 cut(s) 131
EcoICRI GAGCTC 1 cut(s) 147
EcoNI CCTNNNNNAGG 2 cut(s) 253, 3073
EcoO109I RGGNCCY 2 cut(s) 357, 2259
EcoRII CCWGG 5 cut(s) 2548, 2600, 3030, 3221, 4431
EcoRV GATATC 1 cut(s) 421
EcoT14I CCWWGG 6 cut(s) 89, 254, 503, 807, 1995, 3407
EcoT22I ATGCAT 3 cut(s) 1141, 1867, 4390
EcoT38I GRGCYC 1 cut(s) 149
EgeI GGCGCC 1 cut(s) 2001
EheI GGCGCC 1 cut(s) 2001
ErhI CCWWGG 6 cut(s) 89, 254, 503, 807, 1995, 3407
Esp3I CGTCTC 2 cut(s) 3007, 3626
FalI AAGNNNNNCTT 2 cut(s) 3087, 3119
FaqI GGGAC 2 cut(s) 343, 2272
FauI CCCGC 2 cut(s) 313, 1379
FauNDI CATATG 2 cut(s) 1394, 4390
FbaI TGATCA 2 cut(s) 1987, 2299
FriOI GRGCYC 1 cut(s) 149
GlaI GCGC 5 cut(s) 197, 935, 1225, 1414, 2001
GsuI CTGGAG 2 cut(s) 1695, 2781
HaeII RGCGCY 5 cut(s) 199, 937, 1227, 1416, 2003
HaeIII GGCC 9 cut(s) 12, 76, 689, 782, 1680, 1953, 2378, 3190, 4210
HapII CCGG 7 cut(s) 6, 110, 122, 361, 485, 1235, 4202
HgaI GACGC 3 cut(s) 434, 2328, 3681
HhaI GCGC 5 cut(s) 198, 936, 1226, 1415, 2002
Hin1I GRCGYC 1 cut(s) 2000
Hin6I GCGC 5 cut(s) 196, 934, 1224, 1413, 2000
HinP1I GCGC 5 cut(s) 196, 934, 1224, 1413, 2000
HincII GTYRAC 3 cut(s) 2962, 3591, 3720
HindII GTYRAC 3 cut(s) 2962, 3591, 3720
HpaI GTTAAC 1 cut(s) 2962
HpaII CCGG 7 cut(s) 6, 110, 122, 361, 485, 1235, 4202
HphI GGTGA 9 cut(s) 1055, 1414, 1703, 1748, 1817, 1950, 2403, 2684, 4460
Hpy166II GTNNAC 6 cut(s) 2962, 3458, 3591, 3720, 3971, 4451
Hpy8I GTNNAC 6 cut(s) 2962, 3458, 3591, 3720, 3971, 4451
Hpy99I CGWCG 3 cut(s) 145, 428, 3675
HpyCH4IV ACGT 5 cut(s) 2653, 3310, 3320, 4002, 4083
HpySE526I ACGT 5 cut(s) 2653, 3310, 3320, 4002, 4083
Hsp92I GRCGYC 1 cut(s) 2000
HspAI GCGC 5 cut(s) 196, 934, 1224, 1413, 2000
KasI GGCGCC 1 cut(s) 1999
Kpn2I TCCGGA 1 cut(s) 4201
Ksp22I TGATCA 2 cut(s) 1987, 2299
KspAI GTTAAC 1 cut(s) 2962
KspI CCGCGG 1 cut(s) 3188
LmnI GCTCC 3 cut(s) 1336, 3449, 4172
MaeII ACGT 5 cut(s) 2653, 3310, 3320, 4002, 4083
MaeIII GTNAC 8 cut(s) 17, 1388, 2533, 3130, 3262, 3296, 3698, 4084
MfeI CAATTG 3 cut(s) 1580, 2856, 3709
MflI RGATCY 4 cut(s) 1262, 3290, 3579, 3786
MhlI GDGCHC 3 cut(s) 149, 2504, 3460
Mly113I GGCGCC 1 cut(s) 2000
MlyI GAGTC 4 cut(s) 109, 1067, 2914, 3596
Mph1103I ATGCAT 3 cut(s) 1141, 1867, 4390
MroI TCCGGA 1 cut(s) 4201
MroXI GAANNNNTTC 1 cut(s) 2544
MslI CAYNNNNRTG 6 cut(s) 321, 377, 1021, 1147, 2676, 3764
MspA1I CMGCKG 4 cut(s) 1604, 3047, 3056, 3187
MspCI CTTAAG 1 cut(s) 1241
MspI CCGG 7 cut(s) 6, 110, 122, 361, 485, 1235, 4202
MspR9I CCNGG 6 cut(s) 361, 2550, 2602, 3032, 3223, 4433
MunI CAATTG 3 cut(s) 1580, 2856, 3709
Mva1269I GAATGC 5 cut(s) 517, 625, 655, 802, 4407
MvaI CCWGG 5 cut(s) 2550, 2602, 3032, 3223, 4433
MvnI CGCG 2 cut(s) 737, 3187
NarI GGCGCC 1 cut(s) 2000
NciI CCSGG 1 cut(s) 361
NcoI CCATGG 3 cut(s) 807, 1995, 3407
NdeI CATATG 2 cut(s) 1394, 4390
NheI GCTAGC 2 cut(s) 266, 3040
NlaIV GGNNCC 7 cut(s) 64, 96, 359, 1338, 2001, 2260, 2503
NmeAIII GCCGAG 4 cut(s) 241, 322, 715, 3598
NmuCI GTSAC 6 cut(s) 17, 2533, 3130, 3262, 3296, 4084
NsiI ATGCAT 3 cut(s) 1141, 1867, 4390
NspI RCATGY 2 cut(s) 320, 4310
PaeI GCATGC 2 cut(s) 320, 4310
PceI AGGCCT 1 cut(s) 76
PcsI WCGNNNNNNNCGW 1 cut(s) 687
PctI GAATGC 5 cut(s) 517, 625, 655, 802, 4407
PdmI GAANNNNTTC 1 cut(s) 2544
PflMI CCANNNNNTGG 1 cut(s) 1007
PleI GAGTC 4 cut(s) 109, 1066, 2913, 3595
PluTI GGCGCC 1 cut(s) 2003
PpsI GAGTC 4 cut(s) 109, 1066, 2913, 3595
Ppu21I YACGTR 1 cut(s) 2654
PpuMI RGGWCCY 2 cut(s) 357, 2259
PshBI ATTAAT 1 cut(s) 528
PsiI TTATAA 1 cut(s) 608
Psp124BI GAGCTC 1 cut(s) 149
Psp1406I AACGTT 1 cut(s) 3320
Psp5II RGGWCCY 2 cut(s) 357, 2259
Psp6I CCWGG 5 cut(s) 2548, 2600, 3030, 3221, 4431
PspGI CCWGG 5 cut(s) 2548, 2600, 3030, 3221, 4431
PspN4I GGNNCC 7 cut(s) 64, 96, 359, 1338, 2001, 2260, 2503
PspPI GGNCC 6 cut(s) 357, 1679, 2259, 3159, 3404, 4011
PspPPI RGGWCCY 2 cut(s) 357, 2259
PstI CTGCAG 3 cut(s) 1705, 3067, 3308
PstNI CAGNNNCTG 2 cut(s) 2156, 3266
PsuI RGATCY 4 cut(s) 1262, 3290, 3579, 3786
PvuII CAGCTG 2 cut(s) 1604, 3047
RsaI GTAC 5 cut(s) 1560, 2187, 2955, 3909, 4099
RsaNI GTAC 5 cut(s) 1559, 2186, 2954, 3908, 4098
RseI CAYNNNNRTG 6 cut(s) 321, 377, 1021, 1147, 2676, 3764
Rsr2I CGGWCCG 1 cut(s) 4011
RsrII CGGWCCG 1 cut(s) 4011
SacI GAGCTC 1 cut(s) 149
SacII CCGCGG 1 cut(s) 3188
Sau96I GGNCC 6 cut(s) 357, 1679, 2259, 3159, 3404, 4011
SchI GAGTC 4 cut(s) 109, 1067, 2914, 3596
ScrFI CCNGG 6 cut(s) 361, 2550, 2602, 3032, 3223, 4433
SduI GDGCHC 3 cut(s) 149, 2504, 3460
SfcI CTRYAG 4 cut(s) 1078, 1701, 3063, 3304
SfoI GGCGCC 1 cut(s) 2001
Sfr303I CCGCGG 1 cut(s) 3188
SgrBI CCGCGG 1 cut(s) 3188
SinI GGWCC 5 cut(s) 357, 2259, 3159, 3404, 4011
SmiMI CAYNNNNRTG 6 cut(s) 321, 377, 1021, 1147, 2676, 3764
SmlI CTYRAG 2 cut(s) 1241, 2769
SmoI CTYRAG 2 cut(s) 1241, 2769
SpeI ACTAGT 1 cut(s) 1178
SphI GCATGC 2 cut(s) 320, 4310
SseBI AGGCCT 1 cut(s) 76
SspDI GGCGCC 1 cut(s) 1999
SstI GAGCTC 1 cut(s) 149
StuI AGGCCT 1 cut(s) 76
StyD4I CCNGG 6 cut(s) 359, 2548, 2600, 3030, 3221, 4431
StyI CCWWGG 6 cut(s) 89, 254, 503, 807, 1995, 3407
TaiI ACGT 5 cut(s) 2656, 3313, 3323, 4005, 4086
TaqI TCGA 9 cut(s) 143, 233, 278, 423, 479, 771, 1423, 3585, 4355
TaqII GACCGA 1 cut(s) 3999
TatI WGTACW 2 cut(s) 2953, 4097
TauI GCSGC 5 cut(s) 63, 304, 3187, 3190, 4117
TscAI CASTG 6 cut(s) 556, 886, 1301, 1600, 2683, 3271
TseFI GTSAC 6 cut(s) 17, 2533, 3130, 3262, 3296, 4084
Tsp45I GTSAC 6 cut(s) 17, 2533, 3130, 3262, 3296, 4084
TspGWI ACGGA 7 cut(s) 66, 1187, 2209, 2387, 2556, 2947, 4003
TspRI CASTG 6 cut(s) 556, 886, 1301, 1600, 2683, 3271
Van91I CCANNNNNTGG 1 cut(s) 1007
Vha464I CTTAAG 1 cut(s) 1241
VneI GTGCAC 1 cut(s) 3456
VpaK11BI GGWCC 5 cut(s) 357, 2259, 3159, 3404, 4011
VspI ATTAAT 1 cut(s) 528
XagI CCTNNNNNAGG 2 cut(s) 253, 3073
XapI RAATTY 8 cut(s) 105, 126, 865, 1494, 1780, 1880, 2326, 2392
XbaI TCTAGA 2 cut(s) 2749, 2785
XceI RCATGY 2 cut(s) 320, 4310
XcmI CCANNNNNNNNNTGG 2 cut(s) 3229, 3625
XmaJI CCTAGG 2 cut(s) 89, 254
XmnI GAANNNNTTC 1 cut(s) 2544
Zsp2I ATGCAT 3 cut(s) 1141, 1867, 4390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.