Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002675

Physical Location & Seq

Genomic Coordinates Reverse (-)

165141 .. 167259

Gene Structure 2119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G01350.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGATCTCTGTCTCTCGATTCTTGTCGCCTCAATTCTACGCAATTCCAAGGAGCTTCGTAAAAATGTCTGCTTCAGCGACTCAAACGGCCGGAGAAGTTTCAATGGGGATCAAGCCTCCTTCACACCCTACTTACGATTTGAAAGCTGTTATCAAACTAGCCCTAGCTGAAGATGCTGGTCATACAGGAGATGTAACGTGTATGGCTACGATACCGTTTGATATGGAAGTGGAAGCTTATTTCTTGGCCAAGGAAGATGGTATTGTTGCTGGAGTTGCTCTTGCTGACATGATTTTTGAACATGTTGATCCCTCCTTGAAGGTTGAATGGATGCGAAAGGATGGAGATTATGTTCATAAAGGATTGAAGTTTGGGAAAGTATCAGGGAATGCACATAAGATTGTTGTTGCTGAAAGAGTTTTGCTCAACTTTATGCAGAGGATGAGTGGAATTGCAACCCTTACCAAGTTAATGGCAGATGCTGCATCCCCTGCATGTATACTGGAGACAAGAAAAACTGCTCCTGGTTTGCGGTTGGTAGATAAATGGGCGGTACTGATTGGTGGAGGGAGGAATCATAGGATGGGGTTATTTGATATGGTGATGATAAAAGATAACCATATCTCAGCTGCAGGCGGTATAGTAAACGCCGTCAAATCCGTAGACGAATATCTAAAGCAAAAGAATCTCGAAATGGATGTAGAGGTGGAGACGAGGACGCTTGAGGAAGTGAAGGAAGTGTTAGAGTATGCTAGTGGATCCGAGACTCGGTTGACGAGAATAATGCTGGATAATATGGTTGTGCCCTTAGAGAATGGAGATGTCGATGTCACAATGCTTAAAGATGCGGTAGAGCTAATCAACGGGAGATTCGAGACAGAGGCATCAGGCAATGTTACACTTGAGACAGTACACAAGATCGGACAGAGTGGAGTTACATTCATTAGCAGTGGAGCTCTTACGCATTCGGTGAAAGCACTAGACATATCTCTGAAGATCGATACAGAGTTGGCTCTCGAGGTGGGAAGAAGGACCAAACGAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004514 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009165 GO:0009435 GO:0009507 GO:0009536 GO:0009987 GO:0016054 GO:0016740 GO:0016757 GO:0016763 GO:0017144 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0019752 GO:0034213 GO:0034641 GO:0034654 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043649 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046483 GO:0046496 GO:0046700 GO:0046874 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072524 GO:0072525 GO:0072526 GO:0090407 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

QRPTase_C QRPTase_N

Protein Analysis

348

Amino Acids

37.95

Weight (kDa)

5.9

Isoelectric Point (pI)

28.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QRPTase_N	PF02749	43 - 128	4.6e-22	Quinolinate phosphoribosyl transferase, N-terminal domain
QRPTase_C	PF01729	130 - 311	2.1e-53	Quinolinate phosphoribosyl transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01350 AT2G01350 AT2G01350 AT2G01350
fragaria_vesca	FvH4_4g32330 FvH4_4g32330 FvH4_4g32330 FvH4_4g32330
malus_domestica	MD16G1029000.v1.1
prunus_persica	Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1
pyrus_communis	pycom16g02470
rosa_chinensis	RchiOBHm_Chr2g0157601 RchiOBHm_Chr4g0441121
rosa_laevigata	RLG00000006112
rosa_multiflora	Rmu_sc0000607.1_g000026 Rmu_sc0006317.1_g000018 Rmu_sc0017059.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382090
rosa_rugosa	Rorug03G0337500 Rorug04G0331400
rosa_samantha	Rh1AG340100 Rh2BG059800 Rh2BG243400 Rh2BG348100 Rh2DG286800 Rh3BG365900 Rh4AG382900 Rh4BG396800 Rh4CG411800 Rh4DG389700 Rh5BG215200 Rh5BG425100 Rh6BG216200 Rh6DG027200
rosa_wichuraiana	Rw4G033050 Rw6G003900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	499, 663
AciI	CCGC	4 cut(s)	532, 551, 636, 848
AclWI	GGATC	4 cut(s)	116, 302, 753, 766
AcoI	YGGCCR	2 cut(s)	87, 246
AcuI	CTGAAG	3 cut(s)	57, 189, 1013
AfaI	GTAC	2 cut(s)	555, 912
AfiI	CCNNNNNNNGG	1 cut(s)	768
AflIII	ACRYGT	2 cut(s)	197, 301
AgsI	TTSAA	6 cut(s)	102, 142, 299, 319, 326, 367
AjnI	CCWGG	1 cut(s)	523
AloI	GAACNNNNNNTCC	2 cut(s)	336, 368
AluBI	AGCT	7 cut(s)	54, 146, 167, 236, 629, 856, 956
AluI	AGCT	7 cut(s)	54, 146, 167, 236, 629, 856, 956
Alw21I	GWGCWC	1 cut(s)	958
Alw26I	GTCTC	6 cut(s)	16, 500, 704, 758, 869, 899
AlwI	GGATC	4 cut(s)	116, 302, 753, 766
AlwNI	CAGNNNCTG	1 cut(s)	482
Ama87I	CYCGRG	1 cut(s)	1016
AoxI	GGCC	2 cut(s)	87, 246
ApeKI	GCWGC	2 cut(s)	482, 629
ArsI	GACNNNNNNTTYG	2 cut(s)	278, 310
AspS9I	GGNCC	1 cut(s)	1032
AsuHPI	GGTGA	2 cut(s)	613, 982
AvaI	CYCGRG	1 cut(s)	1016
AvaII	GGWCC	1 cut(s)	1032
BaeGI	GKGCMC	1 cut(s)	807
BalI	TGGCCA	1 cut(s)	248
BamHI	GGATCC	1 cut(s)	758
BanII	GRGCYC	1 cut(s)	958
Bbv12I	GWGCWC	1 cut(s)	958
BbvI	GCAGC	2 cut(s)	469, 616
BccI	CCATC	3 cut(s)	251, 335, 577
BceAI	ACGGC	2 cut(s)	102, 635
BcgI	CGANNNNNNTGC	2 cut(s)	766, 800
BciT130I	CCWGG	1 cut(s)	525
BcoDI	GTCTC	6 cut(s)	16, 500, 704, 758, 869, 899
BfaI	CTAG	4 cut(s)	158, 164, 753, 980
BfmI	CTRYAG	1 cut(s)	630
BisI	GCNGC	2 cut(s)	483, 630
BlsI	GCNGC	2 cut(s)	484, 631
Bme1390I	CCNGG	1 cut(s)	525
Bme18I	GGWCC	1 cut(s)	1032
BmeT110I	CYCGRG	1 cut(s)	1016
BmgT120I	GGNCC	1 cut(s)	1032
BmiI	GGNNCC	1 cut(s)	760
BmrFI	CCNGG	1 cut(s)	525
BmsI	GCATC	6 cut(s)	163, 321, 469, 494, 835, 893
BplI	GAGNNNNNCTC	2 cut(s)	408, 440
BpmI	CTGGAG	2 cut(s)	291, 524
BpuEI	CTTGAG	2 cut(s)	743, 923
Bsa29I	ATCGAT	1 cut(s)	999
BsaJI	CCNNGG	2 cut(s)	47, 249
BsaXI	ACNNNNNCTCC	2 cut(s)	336, 366
Bsc4I	CCNNNNNNNGG	1 cut(s)	768
Bse1I	ACTGG	1 cut(s)	507
Bse3DI	GCAATG	1 cut(s)	898
BseBI	CCWGG	1 cut(s)	525
BseCI	ATCGAT	1 cut(s)	999
BseDI	CCNNGG	2 cut(s)	47, 249
BseGI	GGATG	6 cut(s)	336, 346, 447, 485, 588, 703
BseLI	CCNNNNNNNGG	1 cut(s)	768
BseMI	GCAATG	1 cut(s)	898
BseMII	CTCAG	1 cut(s)	639
BseNI	ACTGG	1 cut(s)	507
BseSI	GKGCMC	1 cut(s)	807
BseX3I	CGGCCG	1 cut(s)	87
BseXI	GCAGC	2 cut(s)	469, 616
Bsh1285I	CGRYCG	1 cut(s)	90
BshFI	GGCC	2 cut(s)	89, 248
BshVI	ATCGAT	1 cut(s)	999
BsiEI	CGRYCG	1 cut(s)	90
BsiHKAI	GWGCWC	1 cut(s)	958
BsiHKCI	CYCGRG	1 cut(s)	1016
BsiSI	CCGG	1 cut(s)	90
BslI	CCNNNNNNNGG	1 cut(s)	768
BsmAI	GTCTC	6 cut(s)	16, 500, 704, 758, 869, 899
BsmBI	CGTCTC	1 cut(s)	704
BsmI	GAATGC	2 cut(s)	394, 964
BsnI	GGCC	2 cut(s)	89, 248
BsoBI	CYCGRG	1 cut(s)	1016
Bsp1286I	GDGCHC	2 cut(s)	807, 958
Bsp143I	GATC	6 cut(s)	3, 108, 307, 758, 918, 996
BspACI	CCGC	4 cut(s)	532, 551, 636, 848
BspANI	GGCC	2 cut(s)	89, 248
BspCNI	CTCAG	1 cut(s)	638
BspDI	ATCGAT	1 cut(s)	999
BspLI	GGNNCC	1 cut(s)	760
BspMAI	CTGCAG	1 cut(s)	634
BspPI	GGATC	4 cut(s)	116, 302, 753, 766
BsrDI	GCAATG	1 cut(s)	898
BsrI	ACTGG	1 cut(s)	507
BssECI	CCNNGG	2 cut(s)	47, 249
BssMI	GATC	6 cut(s)	3, 108, 307, 758, 918, 996
BssNAI	GTATAC	1 cut(s)	500
BssT1I	CCWWGG	2 cut(s)	47, 249
Bst1107I	GTATAC	1 cut(s)	500
Bst2UI	CCWGG	1 cut(s)	525
Bst4CI	ACNGT	2 cut(s)	216, 910
BstAPI	GCANNNNNTGC	2 cut(s)	482, 491
BstC8I	GCNNGC	1 cut(s)	634
BstDEI	CTNAG	2 cut(s)	625, 808
BstF5I	GGATG	6 cut(s)	336, 346, 447, 485, 588, 703
BstKTI	GATC	6 cut(s)	6, 111, 310, 761, 921, 999
BstMAI	GTCTC	6 cut(s)	16, 500, 704, 758, 869, 899
BstMBI	GATC	6 cut(s)	3, 108, 307, 758, 918, 996
BstMCI	CGRYCG	1 cut(s)	90
BstMWI	GCNNNNNNNGC	4 cut(s)	173, 275, 482, 491
BstNI	CCWGG	1 cut(s)	525
BstNSI	RCATGY	2 cut(s)	305, 498
BstSCI	CCNGG	1 cut(s)	523
BstSFI	CTRYAG	1 cut(s)	630
BstSLI	GKGCMC	1 cut(s)	807
BstV1I	GCAGC	2 cut(s)	469, 616
BstX2I	RGATCY	1 cut(s)	758
BstXI	CCANNNNNNTGG	1 cut(s)	472
BstYI	RGATCY	1 cut(s)	758
BstZ17I	GTATAC	1 cut(s)	500
BstZI	CGGCCG	1 cut(s)	87
Bsu15I	ATCGAT	1 cut(s)	999
BsuRI	GGCC	2 cut(s)	89, 248
BsuTUI	ATCGAT	1 cut(s)	999
BtsCI	GGATG	6 cut(s)	336, 346, 447, 485, 588, 703
BtsI	GCAGTG	1 cut(s)	955
BtsIMutI	CAGTG	1 cut(s)	955
Cac8I	GCNNGC	1 cut(s)	634
CaiI	CAGNNNCTG	1 cut(s)	482
Cfr13I	GGNCC	1 cut(s)	1032
ClaI	ATCGAT	1 cut(s)	999
CseI	GACGC	1 cut(s)	727
Csp6I	GTAC	2 cut(s)	554, 911
CviAII	CATG	3 cut(s)	289, 302, 495
CviQI	GTAC	2 cut(s)	554, 911
DdeI	CTNAG	2 cut(s)	625, 808
DpnI	GATC	6 cut(s)	5, 110, 309, 760, 920, 998
DpnII	GATC	6 cut(s)	3, 108, 307, 758, 918, 996
EaeI	YGGCCR	2 cut(s)	87, 246
EagI	CGGCCG	1 cut(s)	87
Ecl136II	GAGCTC	1 cut(s)	956
EclXI	CGGCCG	1 cut(s)	87
Eco130I	CCWWGG	2 cut(s)	47, 249
Eco24I	GRGCYC	1 cut(s)	958
Eco47I	GGWCC	1 cut(s)	1032
Eco52I	CGGCCG	1 cut(s)	87
Eco53kI	GAGCTC	1 cut(s)	956
Eco57I	CTGAAG	3 cut(s)	57, 189, 1013
Eco88I	CYCGRG	1 cut(s)	1016
EcoICRI	GAGCTC	1 cut(s)	956
EcoRII	CCWGG	1 cut(s)	523
EcoT14I	CCWWGG	2 cut(s)	47, 249
EcoT38I	GRGCYC	1 cut(s)	958
ErhI	CCWWGG	2 cut(s)	47, 249
Esp3I	CGTCTC	1 cut(s)	704
FaeI	CATG	3 cut(s)	292, 305, 498
FatI	CATG	3 cut(s)	288, 301, 494
FblI	GTMKAC	2 cut(s)	499, 663
Fnu4HI	GCNGC	2 cut(s)	483, 630
FokI	GGATG	6 cut(s)	343, 353, 454, 472, 595, 710
FriOI	GRGCYC	1 cut(s)	958
Fsp4HI	GCNGC	2 cut(s)	483, 630
FspBI	CTAG	4 cut(s)	158, 164, 753, 980
GluI	GCNGC	2 cut(s)	483, 630
GsuI	CTGGAG	2 cut(s)	291, 524
HaeIII	GGCC	2 cut(s)	89, 248
HapII	CCGG	1 cut(s)	90
HgaI	GACGC	1 cut(s)	727
Hin1II	CATG	3 cut(s)	292, 305, 498
HincII	GTYRAC	1 cut(s)	774
HindII	GTYRAC	1 cut(s)	774
HindIII	AAGCTT	1 cut(s)	234
HinfI	GANTC	6 cut(s)	18, 79, 574, 685, 766, 870
HpaII	CCGG	1 cut(s)	90
HphI	GGTGA	2 cut(s)	613, 982
Hpy166II	GTNNAC	5 cut(s)	500, 646, 664, 774, 913
Hpy188I	TCNGA	3 cut(s)	763, 923, 993
Hpy188III	TCNNGA	4 cut(s)	15, 689, 874, 1016
Hpy8I	GTNNAC	5 cut(s)	500, 646, 664, 774, 913
HpyAV	CCTTC	4 cut(s)	129, 313, 727, 1023
HpyCH4III	ACNGT	2 cut(s)	216, 910
HpyCH4IV	ACGT	1 cut(s)	197
HpyCH4V	TGCA	6 cut(s)	392, 436, 455, 485, 494, 632
HpyF10VI	GCNNNNNNNGC	4 cut(s)	173, 275, 482, 491
HpyF3I	CTNAG	2 cut(s)	625, 808
HpySE526I	ACGT	1 cut(s)	197
Hsp92II	CATG	3 cut(s)	292, 305, 498
Kzo9I	GATC	6 cut(s)	3, 108, 307, 758, 918, 996
LmnI	GCTCC	3 cut(s)	51, 526, 953
Lsp1109I	GCAGC	2 cut(s)	469, 616
LweI	GCATC	6 cut(s)	163, 321, 469, 494, 835, 893
MaeI	CTAG	4 cut(s)	158, 164, 753, 980
MaeII	ACGT	1 cut(s)	197
MaeIII	GTNAC	4 cut(s)	193, 829, 895, 934
MalI	GATC	6 cut(s)	5, 110, 309, 760, 920, 998
MboI	GATC	6 cut(s)	3, 108, 307, 758, 918, 996
MboII	GAAGA	4 cut(s)	182, 266, 1006, 1038
MflI	RGATCY	1 cut(s)	758
MhlI	GDGCHC	2 cut(s)	807, 958
MlsI	TGGCCA	1 cut(s)	248
MluCI	AATT	3 cut(s)	32, 42, 450
MluNI	TGGCCA	1 cut(s)	248
MlyI	GAGTC	2 cut(s)	73, 760
Mox20I	TGGCCA	1 cut(s)	248
MscI	TGGCCA	1 cut(s)	248
MseI	TTAA	2 cut(s)	470, 840
Msp20I	TGGCCA	1 cut(s)	248
MspA1I	CMGCKG	1 cut(s)	629
MspI	CCGG	1 cut(s)	90
MspR9I	CCNGG	1 cut(s)	525
Mva1269I	GAATGC	2 cut(s)	394, 964
MvaI	CCWGG	1 cut(s)	525
MwoI	GCNNNNNNNGC	4 cut(s)	173, 275, 482, 491
NdeII	GATC	6 cut(s)	3, 108, 307, 758, 918, 996
NlaIII	CATG	3 cut(s)	292, 305, 498
NlaIV	GGNNCC	1 cut(s)	760
NmuCI	GTSAC	1 cut(s)	829
NspI	RCATGY	2 cut(s)	305, 498
PaeR7I	CTCGAG	1 cut(s)	1016
PciI	ACATGT	1 cut(s)	301
PcsI	WCGNNNNNNNCGW	1 cut(s)	870
PctI	GAATGC	2 cut(s)	394, 964
PfeI	GAWTC	4 cut(s)	18, 574, 685, 870
PkrI	GCNGC	2 cut(s)	484, 631
PleI	GAGTC	2 cut(s)	73, 760
PpsI	GAGTC	2 cut(s)	73, 760
PscI	ACATGT	1 cut(s)	301
Psp124BI	GAGCTC	1 cut(s)	958
Psp6I	CCWGG	1 cut(s)	523
PspGI	CCWGG	1 cut(s)	523
PspN4I	GGNNCC	1 cut(s)	760
PspPI	GGNCC	1 cut(s)	1032
PstI	CTGCAG	1 cut(s)	634
PstNI	CAGNNNCTG	1 cut(s)	482
PsuI	RGATCY	1 cut(s)	758
PvuII	CAGCTG	1 cut(s)	629
RsaI	GTAC	2 cut(s)	555, 912
RsaNI	GTAC	2 cut(s)	554, 911
SacI	GAGCTC	1 cut(s)	958
SaqAI	TTAA	2 cut(s)	470, 840
SatI	GCNGC	2 cut(s)	483, 630
Sau3AI	GATC	6 cut(s)	3, 108, 307, 758, 918, 996
Sau96I	GGNCC	1 cut(s)	1032
SchI	GAGTC	2 cut(s)	73, 760
ScrFI	CCNGG	1 cut(s)	525
SduI	GDGCHC	2 cut(s)	807, 958
SfaNI	GCATC	6 cut(s)	163, 321, 469, 494, 835, 893
SfcI	CTRYAG	1 cut(s)	630
Sfr274I	CTCGAG	1 cut(s)	1016
SinI	GGWCC	1 cut(s)	1032
SlaI	CTCGAG	1 cut(s)	1016
SmlI	CTYRAG	3 cut(s)	722, 902, 1016
SmoI	CTYRAG	3 cut(s)	722, 902, 1016
Sse9I	AATT	3 cut(s)	32, 42, 450
SsiI	CCGC	4 cut(s)	532, 551, 636, 848
SspMI	CTAG	4 cut(s)	158, 164, 753, 980
SstI	GAGCTC	1 cut(s)	958
StyD4I	CCNGG	1 cut(s)	523
StyI	CCWWGG	2 cut(s)	47, 249
TaaI	ACNGT	2 cut(s)	216, 910
TaiI	ACGT	1 cut(s)	200
TaqI	TCGA	6 cut(s)	16, 690, 825, 873, 999, 1017
TasI	AATT	3 cut(s)	32, 42, 450
TatI	WGTACW	1 cut(s)	910
TfiI	GAWTC	4 cut(s)	18, 574, 685, 870
Tru1I	TTAA	2 cut(s)	470, 840
Tru9I	TTAA	2 cut(s)	470, 840
TscAI	CASTG	1 cut(s)	955
TseFI	GTSAC	1 cut(s)	829
TseI	GCWGC	2 cut(s)	482, 629
Tsp45I	GTSAC	1 cut(s)	829
TspDTI	ATGAA	2 cut(s)	344, 931
TspGWI	ACGGA	1 cut(s)	649
TspRI	CASTG	1 cut(s)	955
VpaK11BI	GGWCC	1 cut(s)	1032
XceI	RCATGY	2 cut(s)	305, 498
XhoI	CTCGAG	1 cut(s)	1016
XmiI	GTMKAC	2 cut(s)	499, 663
XspI	CTAG	4 cut(s)	158, 164, 753, 980

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.