Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002675

Physical Location & Seq

Genomic Coordinates Reverse (-)

40827051 .. 40834603

Gene Structure 7553 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG216200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGTCTGCAGTTCAAACTGAGAAGCCCGGTTTATCATATGAATCCCTACCGATAAAGCCTCCTTCACATCCGACTTACGATTTGTTGGGTGTCATCAAGTCAGCCCTTGCTGAAGACACTGGGGATCGAGGCGATGTGACATGTCTGGCTACCATTCCATCTGAGATGGAAGTAGAAGCCCACTTCTTGGCAAAGGAGAATTGTATAGTTGCTGGAATTGCACTTGCAGAGATGGTATTTTATGAAGTTGATCCCACTCTAAAGGTTGAGTGGTCACAAAAGGGTGGAGACTCCGTACATAAAGGCTTAGAGTCTGGAAAAGTTTATGAGAAGCCAAGATGTCCTTATGAGAAGGAACATTTGAATGTTGAGCTGAAGCTTGTTGGAGAATATGGGCTTCGGCGCAAGAGGGACTTGTGGAGGGTCCAGTATGCTTTGAGCCGCATCAGTAATGCTGCTAGGGAACTTCTTACTCTGGACAAGAAAAATCCTCGCCCAAGCACTAAGCATTCAGCTCAAATGACACAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004514 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009165 GO:0009435 GO:0009507 GO:0009536 GO:0009987 GO:0016054 GO:0016740 GO:0016757 GO:0016763 GO:0017144 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0019752 GO:0034213 GO:0034641 GO:0034654 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043649 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046483 GO:0046496 GO:0046700 GO:0046874 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072524 GO:0072525 GO:0072526 GO:0090407 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

QRPTase_C QRPTase_N

Protein Analysis

177

Amino Acids

19.8

Weight (kDa)

6.97

Isoelectric Point (pI)

24.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QRPTase_N	PF02749	45 - 102	7.4e-10	Quinolinate phosphoribosyl transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01350 AT2G01350 AT2G01350 AT2G01350
fragaria_vesca	FvH4_4g32330 FvH4_4g32330 FvH4_4g32330 FvH4_4g32330
malus_domestica	MD16G1029000.v1.1
prunus_persica	Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1
pyrus_communis	pycom16g02470
rosa_chinensis	RchiOBHm_Chr2g0157601 RchiOBHm_Chr4g0441121
rosa_laevigata	RLG00000006112
rosa_multiflora	Rmu_sc0000607.1_g000026 Rmu_sc0006317.1_g000018 Rmu_sc0017059.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382090
rosa_rugosa	Rorug03G0337500 Rorug04G0331400
rosa_samantha	Rh1AG340100 Rh2BG059800 Rh2BG243400 Rh2BG348100 Rh2DG286800 Rh3BG365900 Rh4AG382900 Rh4BG396800 Rh4CG411800 Rh4DG389700 Rh5BG215200 Rh5BG425100 Rh6BG216200 Rh6DG027200
rosa_wichuraiana	Rw4G033050 Rw6G003900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	187
AciI	CCGC	1 cut(s)	442
AclWI	GGATC	2 cut(s)	132, 245
AcuI	CTGAAG	2 cut(s)	132, 395
AfaI	GTAC	1 cut(s)	297
AfiI	CCNNNNNNNGG	1 cut(s)	187
AflIII	ACRYGT	1 cut(s)	140
AgsI	TTSAA	2 cut(s)	14, 364
AleI	CACNNNNGTG	1 cut(s)	529
AluBI	AGCT	3 cut(s)	373, 379, 515
AluI	AGCT	3 cut(s)	373, 379, 515
Alw26I	GTCTC	1 cut(s)	282
AlwI	GGATC	2 cut(s)	132, 245
ApeKI	GCWGC	1 cut(s)	455
ArsI	GACNNNNNNTTYG	2 cut(s)	64, 96
AspLEI	GCGC	1 cut(s)	405
AspS9I	GGNCC	1 cut(s)	424
AsuC2I	CCSGG	1 cut(s)	27
AvaII	GGWCC	1 cut(s)	424
BbsI	GAAGAC	1 cut(s)	120
BbvI	GCAGC	1 cut(s)	442
BccI	CCATC	3 cut(s)	160, 166, 226
BcnI	CCSGG	1 cut(s)	27
BcoDI	GTCTC	1 cut(s)	282
BfaI	CTAG	1 cut(s)	459
BfmI	CTRYAG	1 cut(s)	6
BisI	GCNGC	2 cut(s)	442, 456
BlsI	GCNGC	2 cut(s)	443, 457
Bme1390I	CCNGG	1 cut(s)	27
Bme18I	GGWCC	1 cut(s)	424
BmgT120I	GGNCC	1 cut(s)	424
BmiI	GGNNCC	1 cut(s)	425
BmrFI	CCNGG	1 cut(s)	27
BmrI	ACTGGG	1 cut(s)	129
BmsI	GCATC	1 cut(s)	453
BmuI	ACTGGG	1 cut(s)	129
BpiI	GAAGAC	1 cut(s)	120
BpuMI	CCSGG	1 cut(s)	27
BsaXI	ACNNNNNCTCC	2 cut(s)	279, 309
Bsc4I	CCNNNNNNNGG	1 cut(s)	187
Bse1I	ACTGG	2 cut(s)	124, 427
BseGI	GGATG	1 cut(s)	67
BseLI	CCNNNNNNNGG	1 cut(s)	187
BseMII	CTCAG	2 cut(s)	9, 153
BseNI	ACTGG	2 cut(s)	124, 427
BseXI	GCAGC	1 cut(s)	442
BsiSI	CCGG	1 cut(s)	27
BslFI	GGGAC	1 cut(s)	425
BslI	CCNNNNNNNGG	1 cut(s)	187
BsmAI	GTCTC	1 cut(s)	282
BsmFI	GGGAC	1 cut(s)	425
BsmI	GAATGC	1 cut(s)	508
Bsp143I	GATC	2 cut(s)	124, 250
BspACI	CCGC	1 cut(s)	442
BspCNI	CTCAG	2 cut(s)	10, 154
BspLI	GGNNCC	1 cut(s)	425
BspMAI	CTGCAG	1 cut(s)	10
BspPI	GGATC	2 cut(s)	132, 245
BsrI	ACTGG	2 cut(s)	124, 427
BssMI	GATC	2 cut(s)	124, 250
BstDEI	CTNAG	4 cut(s)	18, 162, 307, 504
BstF5I	GGATG	1 cut(s)	67
BstHHI	GCGC	1 cut(s)	405
BstKTI	GATC	2 cut(s)	127, 253
BstMAI	GTCTC	1 cut(s)	282
BstMBI	GATC	2 cut(s)	124, 250
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstNSI	RCATGY	1 cut(s)	144
BstSCI	CCNGG	1 cut(s)	25
BstSFI	CTRYAG	1 cut(s)	6
BstV1I	GCAGC	1 cut(s)	442
BstV2I	GAAGAC	1 cut(s)	120
BtgZI	GCGATG	1 cut(s)	147
BtsCI	GGATG	1 cut(s)	67
BtsIMutI	CAGTG	1 cut(s)	117
CfoI	GCGC	1 cut(s)	405
Cfr13I	GGNCC	1 cut(s)	424
Csp6I	GTAC	1 cut(s)	296
CviAII	CATG	1 cut(s)	141
CviQI	GTAC	1 cut(s)	296
DdeI	CTNAG	4 cut(s)	18, 162, 307, 504
DpnI	GATC	2 cut(s)	126, 252
DpnII	GATC	2 cut(s)	124, 250
Eco47I	GGWCC	1 cut(s)	424
Eco57I	CTGAAG	2 cut(s)	132, 395
FaeI	CATG	1 cut(s)	144
FalI	AAGNNNNNCTT	4 cut(s)	328, 360, 398, 430
FaqI	GGGAC	1 cut(s)	425
FatI	CATG	1 cut(s)	140
FauNDI	CATATG	1 cut(s)	37
Fnu4HI	GCNGC	2 cut(s)	442, 456
FokI	GGATG	1 cut(s)	54
Fsp4HI	GCNGC	2 cut(s)	442, 456
FspBI	CTAG	1 cut(s)	459
GlaI	GCGC	1 cut(s)	404
GluI	GCNGC	2 cut(s)	442, 456
HapII	CCGG	1 cut(s)	27
HhaI	GCGC	1 cut(s)	405
Hin1II	CATG	1 cut(s)	144
Hin6I	GCGC	1 cut(s)	403
HinP1I	GCGC	1 cut(s)	403
HindIII	AAGCTT	1 cut(s)	377
HinfI	GANTC	3 cut(s)	41, 290, 311
HpaII	CCGG	1 cut(s)	27
Hpy188I	TCNGA	2 cut(s)	72, 163
Hpy188III	TCNNGA	2 cut(s)	315, 476
HpyAV	CCTTC	2 cut(s)	72, 346
HpyCH4V	TGCA	3 cut(s)	8, 221, 227
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
HpyF3I	CTNAG	4 cut(s)	18, 162, 307, 504
Hsp92II	CATG	1 cut(s)	144
HspAI	GCGC	1 cut(s)	403
Kzo9I	GATC	2 cut(s)	124, 250
LpnPI	CCDG	7 cut(s)	40, 105, 131, 198, 300, 440, 461
Lsp1109I	GCAGC	1 cut(s)	442
LweI	GCATC	1 cut(s)	453
MaeI	CTAG	1 cut(s)	459
MaeIII	GTNAC	2 cut(s)	136, 273
MalI	GATC	2 cut(s)	126, 252
MboI	GATC	2 cut(s)	124, 250
MboII	GAAGA	1 cut(s)	125
MluCI	AATT	2 cut(s)	199, 216
MlyI	GAGTC	2 cut(s)	284, 320
MmeI	TCCRAC	2 cut(s)	95, 364
MnlI	CCTC	5 cut(s)	69, 122, 402, 414, 501
MslI	CAYNNNNRTG	2 cut(s)	363, 529
MspI	CCGG	1 cut(s)	27
MspR9I	CCNGG	1 cut(s)	27
Mva1269I	GAATGC	1 cut(s)	508
MwoI	GCNNNNNNNGC	1 cut(s)	218
NciI	CCSGG	1 cut(s)	27
NdeI	CATATG	1 cut(s)	37
NdeII	GATC	2 cut(s)	124, 250
NlaIII	CATG	1 cut(s)	144
NlaIV	GGNNCC	1 cut(s)	425
NmuCI	GTSAC	2 cut(s)	136, 273
NspI	RCATGY	1 cut(s)	144
OliI	CACNNNNGTG	1 cut(s)	529
PciI	ACATGT	1 cut(s)	140
PctI	GAATGC	1 cut(s)	508
PfeI	GAWTC	1 cut(s)	41
PflMI	CCANNNNNTGG	1 cut(s)	187
PkrI	GCNGC	2 cut(s)	443, 457
PleI	GAGTC	2 cut(s)	284, 319
PpsI	GAGTC	2 cut(s)	284, 319
PscI	ACATGT	1 cut(s)	140
PspN4I	GGNNCC	1 cut(s)	425
PspPI	GGNCC	1 cut(s)	424
PstI	CTGCAG	1 cut(s)	10
RsaI	GTAC	1 cut(s)	297
RsaNI	GTAC	1 cut(s)	296
RseI	CAYNNNNRTG	2 cut(s)	363, 529
SatI	GCNGC	2 cut(s)	442, 456
Sau3AI	GATC	2 cut(s)	124, 250
Sau96I	GGNCC	1 cut(s)	424
SchI	GAGTC	2 cut(s)	284, 320
ScrFI	CCNGG	1 cut(s)	27
SetI	ASST	4 cut(s)	267, 375, 381, 517
SfaNI	GCATC	1 cut(s)	453
SfcI	CTRYAG	1 cut(s)	6
SinI	GGWCC	1 cut(s)	424
SmiMI	CAYNNNNRTG	2 cut(s)	363, 529
Sse9I	AATT	2 cut(s)	199, 216
SsiI	CCGC	1 cut(s)	442
SspMI	CTAG	1 cut(s)	459
StyD4I	CCNGG	1 cut(s)	25
TaqI	TCGA	1 cut(s)	127
TasI	AATT	2 cut(s)	199, 216
TauI	GCSGC	1 cut(s)	444
TfiI	GAWTC	1 cut(s)	41
TscAI	CASTG	1 cut(s)	124
TseFI	GTSAC	2 cut(s)	136, 273
TseI	GCWGC	1 cut(s)	455
Tsp45I	GTSAC	2 cut(s)	136, 273
TspDTI	ATGAA	2 cut(s)	54, 258
TspGWI	ACGGA	1 cut(s)	283
TspRI	CASTG	1 cut(s)	124
Van91I	CCANNNNNTGG	1 cut(s)	187
VpaK11BI	GGWCC	1 cut(s)	424
XceI	RCATGY	1 cut(s)	144
XspI	CTAG	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.