Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002675

Physical Location & Seq

Genomic Coordinates Reverse (-)

2391096 .. 2395224

Gene Structure 4129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG027200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGATGGCATCAAGGCCGTCCTCGACCGCAAGGACCACTGCCTCATCGTCAACATCTCCGATCTCCACTTCTTCGGCGACCTCGGCAATAGTCTATGCATGAAAGGGAATGTCTTCTTAATTGAACTGGGTACTAATCAGCAAGCACAGCATGCAAATGTAAATATGGTATCCTCATTTCAGTACTTCCAACTTCACTGCACATTCAAATGCTTCTTCATCAAATGTGCAAATCAGCGATGTTACATTCAGAAACATATGGGGAACCTCGTCTTCCCAAGAAGCAGTGACTCTGAAATGCAGCAAAAGAAAGCCATGCAAGAATATAGTGATGGAGACTATCAAGTTGCCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000347 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006268 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0032392 GO:0032508 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0051276 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03030 ko04110 ko04111 ko04113 map03030 map04110 map04111 map04113

Pfam Domains

Protein Families

MCM MCM_N MCM_OB

Protein Analysis

118

Amino Acids

13.51

Weight (kDa)

6.93

Isoelectric Point (pI)

27.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01350 AT2G01350 AT2G01350 AT2G01350
fragaria_vesca	FvH4_4g32330 FvH4_4g32330 FvH4_4g32330 FvH4_4g32330
malus_domestica	MD16G1029000.v1.1
prunus_persica	Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1
pyrus_communis	pycom16g02470
rosa_chinensis	RchiOBHm_Chr2g0157601 RchiOBHm_Chr4g0441121
rosa_laevigata	RLG00000006112
rosa_multiflora	Rmu_sc0000607.1_g000026 Rmu_sc0006317.1_g000018 Rmu_sc0017059.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382090
rosa_rugosa	Rorug03G0337500 Rorug04G0331400
rosa_samantha	Rh1AG340100 Rh2BG059800 Rh2BG243400 Rh2BG348100 Rh2DG286800 Rh3BG365900 Rh4AG382900 Rh4BG396800 Rh4CG411800 Rh4DG389700 Rh5BG215200 Rh5BG425100 Rh6BG216200 Rh6DG027200
rosa_wichuraiana	Rw4G033050 Rw6G003900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	28
AfaI	GTAC	2 cut(s)	133, 185
AgsI	TTSAA	2 cut(s)	125, 208
Alw26I	GTCTC	1 cut(s)	330
AoxI	GGCC	1 cut(s)	15
ApeKI	GCWGC	1 cut(s)	301
Asp700I	GAANNNNTTC	1 cut(s)	113
AspS9I	GGNCC	1 cut(s)	34
AvaII	GGWCC	1 cut(s)	34
BbsI	GAAGAC	2 cut(s)	106, 265
BbvI	GCAGC	1 cut(s)	313
BccI	CCATC	1 cut(s)	326
BceAI	ACGGC	1 cut(s)	2
BciVI	GTATCC	1 cut(s)	181
BcoDI	GTCTC	1 cut(s)	330
BfuI	GTATCC	1 cut(s)	181
BisI	GCNGC	1 cut(s)	302
BlsI	GCNGC	1 cut(s)	303
BmcAI	AGTACT	1 cut(s)	185
Bme18I	GGWCC	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	1 cut(s)	266
BmrI	ACTGGG	1 cut(s)	137
BmsI	GCATC	1 cut(s)	18
BmuI	ACTGGG	1 cut(s)	137
BpiI	GAAGAC	2 cut(s)	106, 265
BsaJI	CCNNGG	1 cut(s)	82
Bse1I	ACTGG	1 cut(s)	132
BseDI	CCNNGG	1 cut(s)	82
BseGI	GGATG	1 cut(s)	10
BseNI	ACTGG	1 cut(s)	132
BseXI	GCAGC	1 cut(s)	313
BsgI	GTGCAG	1 cut(s)	184
Bsh1285I	CGRYCG	1 cut(s)	28
BshFI	GGCC	1 cut(s)	17
BsiEI	CGRYCG	1 cut(s)	28
BsmAI	GTCTC	1 cut(s)	330
BsnI	GGCC	1 cut(s)	17
Bsp143I	GATC	1 cut(s)	61
BspACI	CCGC	1 cut(s)	28
BspANI	GGCC	1 cut(s)	17
BspLI	GGNNCC	1 cut(s)	266
BsrI	ACTGG	1 cut(s)	132
BssECI	CCNNGG	1 cut(s)	82
BssMI	GATC	1 cut(s)	61
BstAPI	GCANNNNNTGC	1 cut(s)	152
BstC8I	GCNNGC	2 cut(s)	144, 153
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	1 cut(s)	64
BstMAI	GTCTC	1 cut(s)	330
BstMBI	GATC	1 cut(s)	61
BstMCI	CGRYCG	1 cut(s)	28
BstMWI	GCNNNNNNNGC	3 cut(s)	84, 148, 152
BstNSI	RCATGY	1 cut(s)	155
BstV1I	GCAGC	1 cut(s)	313
BstV2I	GAAGAC	2 cut(s)	106, 265
BsuI	GTATCC	1 cut(s)	181
BsuRI	GGCC	1 cut(s)	17
BtgZI	GCGATG	1 cut(s)	253
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	3 cut(s)	37, 196, 292
BtsIMutI	CAGTG	3 cut(s)	37, 196, 292
Cac8I	GCNNGC	2 cut(s)	144, 153
Cfr13I	GGNCC	1 cut(s)	34
Csp6I	GTAC	2 cut(s)	132, 184
CviAII	CATG	3 cut(s)	100, 152, 316
CviJI	RGCY	2 cut(s)	17, 314
CviKI_1	RGCY	2 cut(s)	17, 314
CviQI	GTAC	2 cut(s)	132, 184
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	34
EcoT22I	ATGCAT	1 cut(s)	101
FaeI	CATG	3 cut(s)	103, 155, 319
FaiI	YATR	9 cut(s)	97, 101, 153, 167, 258, 260, 317, 327, 355
FatI	CATG	3 cut(s)	99, 151, 315
FauNDI	CATATG	1 cut(s)	258
Fnu4HI	GCNGC	1 cut(s)	302
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	302
GluI	GCNGC	1 cut(s)	302
HaeIII	GGCC	1 cut(s)	17
Hin1II	CATG	3 cut(s)	103, 155, 319
HincII	GTYRAC	1 cut(s)	52
HindII	GTYRAC	1 cut(s)	52
HinfI	GANTC	1 cut(s)	290
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188I	TCNGA	3 cut(s)	61, 252, 295
Hpy8I	GTNNAC	1 cut(s)	52
HpyCH4V	TGCA	6 cut(s)	99, 155, 201, 230, 301, 319
HpyF10VI	GCNNNNNNNGC	3 cut(s)	84, 148, 152
Hsp92II	CATG	3 cut(s)	103, 155, 319
Kzo9I	GATC	1 cut(s)	61
LpnPI	CCDG	1 cut(s)	113
Lsp1109I	GCAGC	1 cut(s)	313
LweI	GCATC	1 cut(s)	18
MaeIII	GTNAC	2 cut(s)	242, 287
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MboII	GAAGA	4 cut(s)	64, 106, 208, 265
MluCI	AATT	1 cut(s)	120
MlyI	GAGTC	1 cut(s)	284
MmeI	TCCRAC	1 cut(s)	214
MnlI	CCTC	5 cut(s)	32, 53, 92, 184, 278
Mph1103I	ATGCAT	1 cut(s)	101
MroXI	GAANNNNTTC	1 cut(s)	113
MseI	TTAA	1 cut(s)	119
MslI	CAYNNNNRTG	2 cut(s)	156, 208
MwoI	GCNNNNNNNGC	3 cut(s)	84, 148, 152
NdeI	CATATG	1 cut(s)	258
NdeII	GATC	1 cut(s)	61
NlaIII	CATG	3 cut(s)	103, 155, 319
NlaIV	GGNNCC	1 cut(s)	266
NmeAIII	GCCGAG	1 cut(s)	63
NmuCI	GTSAC	1 cut(s)	287
NsiI	ATGCAT	1 cut(s)	101
NspI	RCATGY	1 cut(s)	155
PaeI	GCATGC	1 cut(s)	155
PdmI	GAANNNNTTC	1 cut(s)	113
PkrI	GCNGC	1 cut(s)	303
PleI	GAGTC	1 cut(s)	284
PpsI	GAGTC	1 cut(s)	284
PspN4I	GGNNCC	1 cut(s)	266
PspPI	GGNCC	1 cut(s)	34
RsaI	GTAC	2 cut(s)	133, 185
RsaNI	GTAC	2 cut(s)	132, 184
RseI	CAYNNNNRTG	2 cut(s)	156, 208
SaqAI	TTAA	1 cut(s)	119
SatI	GCNGC	1 cut(s)	302
Sau3AI	GATC	1 cut(s)	61
Sau96I	GGNCC	1 cut(s)	34
ScaI	AGTACT	1 cut(s)	185
SchI	GAGTC	1 cut(s)	284
SetI	ASST	2 cut(s)	84, 270
SfaNI	GCATC	1 cut(s)	18
SinI	GGWCC	1 cut(s)	34
SmiMI	CAYNNNNRTG	2 cut(s)	156, 208
SphI	GCATGC	1 cut(s)	155
Sse9I	AATT	1 cut(s)	120
SsiI	CCGC	1 cut(s)	28
TaqI	TCGA	1 cut(s)	24
TasI	AATT	1 cut(s)	120
TatI	WGTACW	1 cut(s)	183
Tru1I	TTAA	1 cut(s)	119
Tru9I	TTAA	1 cut(s)	119
TscAI	CASTG	3 cut(s)	44, 203, 292
TseFI	GTSAC	1 cut(s)	287
TseI	GCWGC	1 cut(s)	301
Tsp45I	GTSAC	1 cut(s)	287
TspDTI	ATGAA	2 cut(s)	116, 208
TspRI	CASTG	3 cut(s)	44, 203, 292
VpaK11BI	GGWCC	1 cut(s)	34
XceI	RCATGY	1 cut(s)	155
XmnI	GAANNNNTTC	1 cut(s)	113
ZrmI	AGTACT	1 cut(s)	185
Zsp2I	ATGCAT	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.