Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002675

Physical Location & Seq

Genomic Coordinates Reverse (-)

61956706 .. 61961520

Gene Structure 4815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00382090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGTTGGGAACTCGCTTTGTTGGGTTGGAGTTGGAAACTGCCGATAGTGACAGTGAAAGGCCTGGACTGAACTGGACTTCTTATTGGGGGTTGGAGATGGCCTTTGCTTCTTCTTCTTCGTCTTTATCTTTCCCTCTGCAAAAGTCGTGCAACGCTTACCCGGCAACTGGGATTCTCTACGGCCTTCCTTTCACCACCCGCCTGCGCTCTCCTATCAGGCAGATCATTAGAATGTCTGCAGTGCAAGATGAAAAGCCCGGTTTGTCTTTTGAATCCCTACCGGTAAAGCCTCCTTCACATCCGACTTATGATTTGTTGGGTGTCATCAAGTCAGCCCTTGCTGAAGACGCTGGGGATCGAGGCGACGTGACATGTCTGGCTACCATTCCACATGATATGGAAGTAGAAGCCCACTTCTTGGCAAAGGAGAATGGTATAGTTGCCGGAGTTGCACTTGCAGAGATGGTATTTTATGAAGTTGATCCCACTCTAAAGGTTGAGTGGTCACAAAAGGATGGAGACTCCGTACATAAAGGCTTAGAGTTTGGAAAAGTTTATGGAAGAGCACACAGCATTGTTGTAGCTGAGAGGGTAGTACTGAATTTTATGCAGAGGATGAGTGGAGTAGCAACTTTAACTAAGGTGATGGCAGATCTTGCAAGCCCTGCATGTATCTTGGAGACGAGAAAAACTGCTCCAGGTTTACGTTTGGTAGATAAGTGGGCGGTACTCATTGGTGGTGGGAAAAATCACAGAATGGGGTTATTTGATATGGTAATGATAAAAGATAATCATATATCAATAGCTGGAGGCATCACGAATGCCCTCAAGTCTGTGGACCTATATCTTCAGCAAAGGAATCTTCAGATGGAGGTTGAGGTGGAGACCCGAACAATTGAAGAAGTAGACAAAGTATTGGACTATGCATCTCAAACAAAGACTTCCTTGACCCGGATAATGTTGGACAATATGGTTGTACCACTATCAAATGGTGACGTTGACGTTAGCATGCTTGAACAAGCTGTGAATTTGATTAAAGGGAGATTTGAGACAGAGGCATCTGGAAATGTTACTCTTGAAACAGTACACAAAATTGGACAAACAGGAGTGGACTACATTTCTAGTGGGGCACTGACACATTCTGTTAAAGCTCTAGACATCTCCCTCAAGATTGATACCGAGTTGGCTCTTCAAGTCGGAAGGCGTACAAAACGAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004514 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009165 GO:0009435 GO:0009507 GO:0009536 GO:0009987 GO:0016054 GO:0016740 GO:0016757 GO:0016763 GO:0017144 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0019752 GO:0034213 GO:0034641 GO:0034654 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043649 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046483 GO:0046496 GO:0046700 GO:0046874 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072524 GO:0072525 GO:0072526 GO:0090407 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

QRPTase_C QRPTase_N

Protein Analysis

406

Amino Acids

44.37

Weight (kDa)

5.67

Isoelectric Point (pI)

32.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QRPTase_N	PF02749	122 - 207	5.2e-22	Quinolinate phosphoribosyl transferase, N-terminal domain
QRPTase_C	PF01729	209 - 390	2.3e-50	Quinolinate phosphoribosyl transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01350 AT2G01350 AT2G01350 AT2G01350
fragaria_vesca	FvH4_4g32330 FvH4_4g32330 FvH4_4g32330 FvH4_4g32330
malus_domestica	MD16G1029000.v1.1
prunus_persica	Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1
pyrus_communis	pycom16g02470
rosa_chinensis	RchiOBHm_Chr2g0157601 RchiOBHm_Chr4g0441121
rosa_laevigata	RLG00000006112
rosa_multiflora	Rmu_sc0000607.1_g000026 Rmu_sc0006317.1_g000018 Rmu_sc0017059.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382090
rosa_rugosa	Rorug03G0337500 Rorug04G0331400
rosa_samantha	Rh1AG340100 Rh2BG059800 Rh2BG243400 Rh2BG348100 Rh2DG286800 Rh3BG365900 Rh4AG382900 Rh4BG396800 Rh4CG411800 Rh4DG389700 Rh5BG215200 Rh5BG425100 Rh6BG216200 Rh6DG027200
rosa_wichuraiana	Rw4G033050 Rw6G003900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	418
AccI	GTMKAC	1 cut(s)	906
AciI	CCGC	2 cut(s)	199, 725
AclWI	GGATC	2 cut(s)	363, 476
AcsI	RAATTY	2 cut(s)	601, 1027
AcuI	CTGAAG	3 cut(s)	363, 833, 848
AfaI	GTAC	6 cut(s)	528, 597, 729, 978, 1086, 1207
AfiI	CCNNNNNNNGG	3 cut(s)	167, 418, 951
AflIII	ACRYGT	1 cut(s)	371
AgeI	ACCGGT	1 cut(s)	280
AgsI	TTSAA	5 cut(s)	272, 899, 1016, 1079, 1193
AjiI	CACGTC	1 cut(s)	367
AjnI	CCWGG	2 cut(s)	61, 697
AluBI	AGCT	4 cut(s)	584, 806, 1022, 1151
AluI	AGCT	4 cut(s)	584, 806, 1022, 1151
Alw21I	GWGCWC	1 cut(s)	568
Alw26I	GTCTC	4 cut(s)	513, 674, 878, 1043
AlwI	GGATC	2 cut(s)	363, 476
AoxI	GGCC	3 cut(s)	59, 99, 181
ApoI	RAATTY	2 cut(s)	601, 1027
ArsI	GACNNNNNNTTYG	2 cut(s)	295, 327
AsiGI	ACCGGT	1 cut(s)	280
AspLEI	GCGC	1 cut(s)	207
AspS9I	GGNCC	1 cut(s)	838
AsuC2I	CCSGG	3 cut(s)	161, 258, 952
AsuHPI	GGTGA	3 cut(s)	184, 655, 1004
AvaII	GGWCC	1 cut(s)	838
BaeGI	GKGCMC	1 cut(s)	1132
BbsI	GAAGAC	1 cut(s)	351
Bbv12I	GWGCWC	1 cut(s)	568
BccI	CCATC	5 cut(s)	91, 457, 509, 640, 862
BceAI	ACGGC	1 cut(s)	196
BciT130I	CCWGG	2 cut(s)	63, 699
BcnI	CCSGG	3 cut(s)	161, 258, 952
BcoDI	GTCTC	4 cut(s)	513, 674, 878, 1043
BfaI	CTAG	2 cut(s)	1122, 1154
BfmI	CTRYAG	1 cut(s)	237
BglII	AGATCT	1 cut(s)	652
BmcAI	AGTACT	1 cut(s)	597
Bme1390I	CCNGG	5 cut(s)	63, 161, 258, 699, 952
Bme18I	GGWCC	1 cut(s)	838
BmgBI	CACGTC	1 cut(s)	367
BmgT120I	GGNCC	1 cut(s)	838
BmrFI	CCNGG	5 cut(s)	63, 161, 258, 699, 952
BmrI	ACTGGG	1 cut(s)	177
BmsI	GCATC	3 cut(s)	822, 935, 1067
BmuI	ACTGGG	1 cut(s)	177
BpiI	GAAGAC	1 cut(s)	351
BpmI	CTGGAG	2 cut(s)	681, 828
BpuEI	CTTGAG	2 cut(s)	812, 1151
BpuMI	CCSGG	3 cut(s)	161, 258, 952
BsaI	GGTCTC	1 cut(s)	878
BsaWI	WCCGGW	1 cut(s)	280
BsaXI	ACNNNNNCTCC	2 cut(s)	510, 540
Bsc4I	CCNNNNNNNGG	3 cut(s)	167, 418, 951
Bse118I	RCCGGY	1 cut(s)	280
Bse1I	ACTGG	2 cut(s)	77, 172
BseBI	CCWGG	2 cut(s)	63, 699
BseGI	GGATG	3 cut(s)	298, 520, 621
BseLI	CCNNNNNNNGG	3 cut(s)	167, 418, 951
BseMII	CTCAG	1 cut(s)	576
BseNI	ACTGG	2 cut(s)	77, 172
BseSI	GKGCMC	1 cut(s)	1132
BseYI	CCCAGC	1 cut(s)	350
BshFI	GGCC	3 cut(s)	61, 101, 183
BshTI	ACCGGT	1 cut(s)	280
BsiHKAI	GWGCWC	1 cut(s)	568
BsiSI	CCGG	5 cut(s)	161, 258, 281, 444, 952
BslI	CCNNNNNNNGG	3 cut(s)	167, 418, 951
BsmAI	GTCTC	4 cut(s)	513, 674, 878, 1043
BsmBI	CGTCTC	1 cut(s)	674
BsmI	GAATGC	1 cut(s)	826
BsnI	GGCC	3 cut(s)	61, 101, 183
Bso31I	GGTCTC	1 cut(s)	878
Bsp1286I	GDGCHC	2 cut(s)	568, 1132
Bsp143I	GATC	4 cut(s)	222, 355, 481, 652
BspACI	CCGC	2 cut(s)	199, 725
BspANI	GGCC	3 cut(s)	61, 101, 183
BspCNI	CTCAG	1 cut(s)	577
BspMAI	CTGCAG	1 cut(s)	241
BspPI	GGATC	2 cut(s)	363, 476
BspQI	GCTCTTC	2 cut(s)	556, 1194
BspTNI	GGTCTC	1 cut(s)	878
BsrFI	RCCGGY	1 cut(s)	280
BsrI	ACTGG	2 cut(s)	77, 172
BssAI	RCCGGY	1 cut(s)	280
BssMI	GATC	4 cut(s)	222, 355, 481, 652
Bst2UI	CCWGG	2 cut(s)	63, 699
Bst4CI	ACNGT	2 cut(s)	53, 1084
Bst6I	CTCTTC	2 cut(s)	556, 1194
BstAPI	GCANNNNNTGC	2 cut(s)	656, 665
BstC8I	GCNNGC	3 cut(s)	203, 661, 1010
BstDEI	CTNAG	3 cut(s)	538, 585, 639
BstF5I	GGATG	3 cut(s)	298, 520, 621
BstHHI	GCGC	1 cut(s)	207
BstKTI	GATC	4 cut(s)	225, 358, 484, 655
BstMAI	GTCTC	4 cut(s)	513, 674, 878, 1043
BstMBI	GATC	4 cut(s)	222, 355, 481, 652
BstMWI	GCNNNNNNNGC	5 cut(s)	161, 347, 449, 656, 665
BstNI	CCWGG	2 cut(s)	63, 699
BstNSI	RCATGY	3 cut(s)	375, 672, 1012
BstSCI	CCNGG	5 cut(s)	61, 159, 256, 697, 950
BstSFI	CTRYAG	1 cut(s)	237
BstSLI	GKGCMC	1 cut(s)	1132
BstV2I	GAAGAC	1 cut(s)	351
BstX2I	RGATCY	1 cut(s)	652
BstYI	RGATCY	1 cut(s)	652
BsuRI	GGCC	3 cut(s)	61, 101, 183
BtrI	CACGTC	1 cut(s)	367
BtsCI	GGATG	3 cut(s)	298, 520, 621
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	3 cut(s)	58, 246, 1130
Cac8I	GCNNGC	3 cut(s)	203, 661, 1010
CfoI	GCGC	1 cut(s)	207
Cfr10I	RCCGGY	1 cut(s)	280
Cfr13I	GGNCC	1 cut(s)	838
CseI	GACGC	1 cut(s)	356
Csp6I	GTAC	6 cut(s)	527, 596, 728, 977, 1085, 1206
CspAI	ACCGGT	1 cut(s)	280
CviAII	CATG	5 cut(s)	372, 392, 669, 1009, 1218
CviQI	GTAC	6 cut(s)	527, 596, 728, 977, 1085, 1206
DdeI	CTNAG	3 cut(s)	538, 585, 639
DpnI	GATC	4 cut(s)	224, 357, 483, 654
DpnII	GATC	4 cut(s)	222, 355, 481, 652
Eam1104I	CTCTTC	2 cut(s)	556, 1194
EarI	CTCTTC	2 cut(s)	556, 1194
Eco147I	AGGCCT	1 cut(s)	61
Eco31I	GGTCTC	1 cut(s)	878
Eco47I	GGWCC	1 cut(s)	838
Eco57I	CTGAAG	3 cut(s)	363, 833, 848
EcoRII	CCWGG	2 cut(s)	61, 697
EcoT22I	ATGCAT	1 cut(s)	928
Esp3I	CGTCTC	1 cut(s)	674
FaeI	CATG	5 cut(s)	375, 395, 672, 1012, 1221
FalI	AAGNNNNNCTT	2 cut(s)	929, 961
FatI	CATG	5 cut(s)	371, 391, 668, 1008, 1217
FauI	CCCGC	1 cut(s)	206
FblI	GTMKAC	1 cut(s)	906
FokI	GGATG	3 cut(s)	285, 527, 628
FspBI	CTAG	2 cut(s)	1122, 1154
GlaI	GCGC	1 cut(s)	206
GsaI	CCCAGC	1 cut(s)	354
GsuI	CTGGAG	2 cut(s)	681, 828
HaeIII	GGCC	3 cut(s)	61, 101, 183
HapII	CCGG	5 cut(s)	161, 258, 281, 444, 952
HgaI	GACGC	1 cut(s)	356
HhaI	GCGC	1 cut(s)	207
Hin1II	CATG	5 cut(s)	375, 395, 672, 1012, 1221
Hin6I	GCGC	1 cut(s)	205
HinP1I	GCGC	1 cut(s)	205
HincII	GTYRAC	1 cut(s)	1000
HindII	GTYRAC	1 cut(s)	1000
HinfI	GANTC	4 cut(s)	172, 272, 521, 859
HpaII	CCGG	5 cut(s)	161, 258, 281, 444, 952
HphI	GGTGA	3 cut(s)	184, 655, 1004
Hpy166II	GTNNAC	6 cut(s)	704, 838, 907, 1000, 1087, 1111
Hpy188I	TCNGA	3 cut(s)	303, 867, 1199
Hpy188III	TCNNGA	5 cut(s)	817, 1062, 1076, 1154, 1168
Hpy8I	GTNNAC	6 cut(s)	704, 838, 907, 1000, 1087, 1111
Hpy99I	CGWCG	1 cut(s)	368
HpyAV	CCTTC	3 cut(s)	194, 303, 1194
HpyCH4III	ACNGT	2 cut(s)	53, 1084
HpyCH4IV	ACGT	4 cut(s)	366, 706, 996, 1002
HpyF10VI	GCNNNNNNNGC	5 cut(s)	161, 347, 449, 656, 665
HpyF3I	CTNAG	3 cut(s)	538, 585, 639
HpySE526I	ACGT	4 cut(s)	366, 706, 996, 1002
Hsp92II	CATG	5 cut(s)	375, 395, 672, 1012, 1221
HspAI	GCGC	1 cut(s)	205
Kzo9I	GATC	4 cut(s)	222, 355, 481, 652
LguI	GCTCTTC	2 cut(s)	556, 1194
LmnI	GCTCC	1 cut(s)	700
LweI	GCATC	3 cut(s)	822, 935, 1067
MaeI	CTAG	2 cut(s)	1122, 1154
MaeII	ACGT	4 cut(s)	366, 706, 996, 1002
MaeIII	GTNAC	5 cut(s)	47, 367, 504, 992, 1069
MalI	GATC	4 cut(s)	224, 357, 483, 654
MboI	GATC	4 cut(s)	222, 355, 481, 652
MboII	GAAGA	9 cut(s)	102, 105, 108, 356, 573, 839, 854, 911, 1181
MfeI	CAATTG	1 cut(s)	894
MflI	RGATCY	1 cut(s)	652
MhlI	GDGCHC	2 cut(s)	568, 1132
MluCI	AATT	4 cut(s)	601, 894, 1027, 1092
MlyI	GAGTC	1 cut(s)	515
MmeI	TCCRAC	6 cut(s)	6, 12, 72, 326, 942, 1177
Mph1103I	ATGCAT	1 cut(s)	928
MseI	TTAA	3 cut(s)	635, 1035, 1146
MslI	CAYNNNNRTG	1 cut(s)	230
MspI	CCGG	5 cut(s)	161, 258, 281, 444, 952
MspR9I	CCNGG	5 cut(s)	63, 161, 258, 699, 952
MunI	CAATTG	1 cut(s)	894
Mva1269I	GAATGC	1 cut(s)	826
MvaI	CCWGG	2 cut(s)	63, 699
MwoI	GCNNNNNNNGC	5 cut(s)	161, 347, 449, 656, 665
NciI	CCSGG	3 cut(s)	161, 258, 952
NdeII	GATC	4 cut(s)	222, 355, 481, 652
NlaIII	CATG	5 cut(s)	375, 395, 672, 1012, 1221
NmuCI	GTSAC	4 cut(s)	47, 367, 504, 992
NsiI	ATGCAT	1 cut(s)	928
NspI	RCATGY	3 cut(s)	375, 672, 1012
PaeI	GCATGC	1 cut(s)	1012
PceI	AGGCCT	1 cut(s)	61
PciI	ACATGT	1 cut(s)	371
PciSI	GCTCTTC	2 cut(s)	556, 1194
PctI	GAATGC	1 cut(s)	826
PfeI	GAWTC	3 cut(s)	172, 272, 859
PflMI	CCANNNNNTGG	1 cut(s)	418
PinAI	ACCGGT	1 cut(s)	280
PleI	GAGTC	1 cut(s)	515
PpsI	GAGTC	1 cut(s)	515
PscI	ACATGT	1 cut(s)	371
Psp6I	CCWGG	2 cut(s)	61, 697
PspFI	CCCAGC	1 cut(s)	350
PspGI	CCWGG	2 cut(s)	61, 697
PspPI	GGNCC	1 cut(s)	838
PstI	CTGCAG	1 cut(s)	241
PsuI	RGATCY	1 cut(s)	652
RsaI	GTAC	6 cut(s)	528, 597, 729, 978, 1086, 1207
RsaNI	GTAC	6 cut(s)	527, 596, 728, 977, 1085, 1206
RseI	CAYNNNNRTG	1 cut(s)	230
SapI	GCTCTTC	2 cut(s)	556, 1194
SaqAI	TTAA	3 cut(s)	635, 1035, 1146
Sau3AI	GATC	4 cut(s)	222, 355, 481, 652
Sau96I	GGNCC	1 cut(s)	838
ScaI	AGTACT	1 cut(s)	597
SchI	GAGTC	1 cut(s)	515
ScrFI	CCNGG	5 cut(s)	63, 161, 258, 699, 952
SduI	GDGCHC	2 cut(s)	568, 1132
SfaNI	GCATC	3 cut(s)	822, 935, 1067
SfcI	CTRYAG	1 cut(s)	237
SinI	GGWCC	1 cut(s)	838
SmiMI	CAYNNNNRTG	1 cut(s)	230
SmlI	CTYRAG	2 cut(s)	827, 1166
SmoI	CTYRAG	2 cut(s)	827, 1166
SphI	GCATGC	1 cut(s)	1012
Sse9I	AATT	4 cut(s)	601, 894, 1027, 1092
SseBI	AGGCCT	1 cut(s)	61
SsiI	CCGC	2 cut(s)	199, 725
SspMI	CTAG	2 cut(s)	1122, 1154
StuI	AGGCCT	1 cut(s)	61
StyD4I	CCNGG	5 cut(s)	61, 159, 256, 697, 950
TaaI	ACNGT	2 cut(s)	53, 1084
TaiI	ACGT	4 cut(s)	369, 709, 999, 1005
TaqI	TCGA	1 cut(s)	358
TasI	AATT	4 cut(s)	601, 894, 1027, 1092
TatI	WGTACW	2 cut(s)	595, 1084
TfiI	GAWTC	3 cut(s)	172, 272, 859
Tru1I	TTAA	3 cut(s)	635, 1035, 1146
Tru9I	TTAA	3 cut(s)	635, 1035, 1146
TscAI	CASTG	3 cut(s)	58, 246, 1137
TseFI	GTSAC	4 cut(s)	47, 367, 504, 992
Tsp45I	GTSAC	4 cut(s)	47, 367, 504, 992
TspDTI	ATGAA	2 cut(s)	264, 489
TspGWI	ACGGA	1 cut(s)	514
TspRI	CASTG	3 cut(s)	58, 246, 1137
Van91I	CCANNNNNTGG	1 cut(s)	418
VpaK11BI	GGWCC	1 cut(s)	838
XapI	RAATTY	2 cut(s)	601, 1027
XbaI	TCTAGA	1 cut(s)	1153
XceI	RCATGY	3 cut(s)	375, 672, 1012
XmiI	GTMKAC	1 cut(s)	906
XspI	CTAG	2 cut(s)	1122, 1154
ZrmI	AGTACT	1 cut(s)	597
Zsp2I	ATGCAT	1 cut(s)	928

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.