Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0002675

Physical Location & Seq

Genomic Coordinates Forward (+)

2061470 .. 2065899

Gene Structure 4430 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1029000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGTGATGGGTTGCGCCTCTCGTTGTTTCTCTCTCCAAAACTCGGCCGCAACTGGTTCGATTCTCCACCCTCCTCCCCTCTGCTACCGCCTTCGATCGCCAGTCAGGAAGATTATTAGAATGTCAGCTACTCAAACAGAAAATCCCAGAATATCATTTGAATCCTTGCCAATAAAACCTCCTTCACATCCGACCTATGATTTGTGGGGTGTCATCAAGTCAGCCATTACTGAGGATGCTGGGGATCGAGGTGATGTGACATGTTTAGCTACCATTCCAGCTGATATGGAAGTAGAAGCCCATTTCTTGGCAAAGGAGAATGGTATAATTGCCGGAATTGCACTTGCGGAGATGGTATTTTATGAAGTTGATCCATCTTTGAAGGTTGAGTGGTCTCAAAAGGATGGAGACTCTGTACATAAAGGCCTAGGTTTTGGAAAAGTTTATGGACGGGCACACAGTATTGTTGTGGCTGAGAGGGTAGCTCTGAATTTTATGCAGAGGATGAGCGGAGTAGCAACTTTAACTAAGGCAATGGCAGATCTTGCAAGTCCTGCATGTATTTTGGAGACAAGAAAAACTGCTCCGGGTTTACGTTTGGTGGACAAGTGGGCGGTACTCATTGGTGGAGGTCGGAATCACAGAATGGGTTTATTTGATATGGTAATGATAAAAGATAATCATATATCAATTGCCGGAGGCATCACAAATGCCCTGAAATCTGTAGACCTGTATCTAGAGCAAAGGAATCTTCAGATGGAGGTTGAGGTTGAGACCCGGACGTTTGAGGAGATAGAAAAGGTATTGGAATATGCATCTCAAACAAAGACTTCCTTGACGCGGATAATGTTGGATAATATGGTTGTACCACTACCAAATGGGGATGTTGATGTATCCATGCTCGAACAAGCTGTGAAATTGATTGATCGGAGATTCGAAACTGAGGCATCTGGTAATGTCACTCTTGAAACCGTACACAAGATTGGACAAACAGGGGTTGACTTCATTTCTAGCGGTGCACTGACTCATTCTGTAAAGGCTCTAGACATCTCCCTCAAGATTGATACGGAGTTGGCCCTTCAAGTCGGACGGCGTACAAAACGAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004514 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009165 GO:0009435 GO:0009507 GO:0009536 GO:0009987 GO:0016054 GO:0016740 GO:0016757 GO:0016763 GO:0017144 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0019752 GO:0034213 GO:0034641 GO:0034654 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043649 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046483 GO:0046496 GO:0046700 GO:0046874 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072524 GO:0072525 GO:0072526 GO:0090407 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

QRPTase_C QRPTase_N

Protein Analysis

370

Amino Acids

40.45

Weight (kDa)

6.52

Isoelectric Point (pI)

33.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QRPTase_N	PF02749	85 - 170	5.1e-22	Quinolinate phosphoribosyl transferase, N-terminal domain
QRPTase_C	PF01729	172 - 353	6.3e-52	Quinolinate phosphoribosyl transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01350 AT2G01350 AT2G01350 AT2G01350
fragaria_vesca	FvH4_4g32330 FvH4_4g32330 FvH4_4g32330 FvH4_4g32330
malus_domestica	MD16G1029000.v1.1
prunus_persica	Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1
pyrus_communis	pycom16g02470
rosa_chinensis	RchiOBHm_Chr2g0157601 RchiOBHm_Chr4g0441121
rosa_laevigata	RLG00000006112
rosa_multiflora	Rmu_sc0000607.1_g000026 Rmu_sc0006317.1_g000018 Rmu_sc0017059.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382090
rosa_rugosa	Rorug03G0337500 Rorug04G0331400
rosa_samantha	Rh1AG340100 Rh2BG059800 Rh2BG243400 Rh2BG348100 Rh2DG286800 Rh3BG365900 Rh4AG382900 Rh4BG396800 Rh4CG411800 Rh4DG389700 Rh5BG215200 Rh5BG425100 Rh6BG216200 Rh6DG027200
rosa_wichuraiana	Rw4G033050 Rw6G003900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	307
AccBSI	CCGCTC	1 cut(s)	510
AccI	GTMKAC	1 cut(s)	726
AccII	CGCG	1 cut(s)	841
AciI	CCGC	7 cut(s)	48, 88, 347, 510, 614, 841, 1014
AclWI	GGATC	2 cut(s)	252, 365
AcoI	YGGCCR	1 cut(s)	45
AcsI	RAATTY	1 cut(s)	490
AcuI	CTGAAG	1 cut(s)	737
AfaI	GTAC	5 cut(s)	417, 618, 867, 975, 1096
AfiI	CCNNNNNNNGG	3 cut(s)	43, 307, 840
AflIII	ACRYGT	1 cut(s)	260
AgsI	TTSAA	4 cut(s)	161, 382, 968, 1082
AluBI	AGCT	5 cut(s)	128, 269, 281, 485, 911
AluI	AGCT	5 cut(s)	128, 269, 281, 485, 911
Alw21I	GWGCWC	1 cut(s)	1021
Alw26I	GTCTC	4 cut(s)	399, 402, 563, 767
Alw44I	GTGCAC	1 cut(s)	1017
AlwI	GGATC	2 cut(s)	252, 365
AoxI	GGCC	3 cut(s)	45, 424, 1074
ApaLI	GTGCAC	1 cut(s)	1017
ApoI	RAATTY	1 cut(s)	490
ArsI	GACNNNNNNTTYG	2 cut(s)	184, 216
AspA2I	CCTAGG	1 cut(s)	427
AspLEI	GCGC	1 cut(s)	17
AspS9I	GGNCC	1 cut(s)	1075
AsuC2I	CCSGG	2 cut(s)	588, 778
AsuHPI	GGTGA	2 cut(s)	16, 263
AsuII	TTCGAA	1 cut(s)	936
AvrII	CCTAGG	1 cut(s)	427
BaeGI	GKGCMC	2 cut(s)	457, 1021
Bbv12I	GWGCWC	1 cut(s)	1021
BccI	CCATC	4 cut(s)	346, 382, 398, 751
BceAI	ACGGC	1 cut(s)	1106
BcgI	CGANNNNNNTGC	2 cut(s)	39, 73
BciVI	GTATCC	1 cut(s)	904
BcnI	CCSGG	2 cut(s)	588, 778
BcoDI	GTCTC	4 cut(s)	399, 402, 563, 767
BfaI	CTAG	4 cut(s)	428, 737, 1011, 1043
BfmI	CTRYAG	1 cut(s)	723
BfuI	GTATCC	1 cut(s)	904
BglII	AGATCT	1 cut(s)	541
BisI	GCNGC	1 cut(s)	48
BlnI	CCTAGG	1 cut(s)	427
BlsI	GCNGC	1 cut(s)	49
Bme1390I	CCNGG	2 cut(s)	588, 778
BmgT120I	GGNCC	1 cut(s)	1075
BmrFI	CCNGG	2 cut(s)	588, 778
BmsI	GCATC	4 cut(s)	226, 711, 824, 956
BplI	GAGNNNNNCTC	2 cut(s)	469, 501
Bpu14I	TTCGAA	1 cut(s)	936
BpuEI	CTTGAG	1 cut(s)	1040
BpuMI	CCSGG	2 cut(s)	588, 778
BsaI	GGTCTC	2 cut(s)	399, 767
BsaJI	CCNNGG	1 cut(s)	427
BsaXI	ACNNNNNCTCC	2 cut(s)	399, 429
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 307, 840
Bse1I	ACTGG	2 cut(s)	58, 101
Bse3DI	GCAATG	1 cut(s)	540
BseDI	CCNNGG	1 cut(s)	427
BseGI	GGATG	5 cut(s)	187, 241, 409, 510, 889
BseLI	CCNNNNNNNGG	3 cut(s)	43, 307, 840
BseMI	GCAATG	1 cut(s)	540
BseMII	CTCAG	3 cut(s)	222, 465, 933
BseNI	ACTGG	2 cut(s)	58, 101
BseRI	GAGGAG	2 cut(s)	63, 803
BseSI	GKGCMC	2 cut(s)	457, 1021
BseX3I	CGGCCG	1 cut(s)	45
BseYI	CCCAGC	1 cut(s)	239
Bsh1236I	CGCG	1 cut(s)	841
Bsh1285I	CGRYCG	2 cut(s)	48, 98
BshFI	GGCC	3 cut(s)	47, 426, 1076
BsiEI	CGRYCG	2 cut(s)	48, 98
BsiHKAI	GWGCWC	1 cut(s)	1021
BsiSI	CCGG	4 cut(s)	333, 587, 696, 778
BslI	CCNNNNNNNGG	3 cut(s)	43, 307, 840
BsmAI	GTCTC	4 cut(s)	399, 402, 563, 767
BsnI	GGCC	3 cut(s)	47, 426, 1076
Bso31I	GGTCTC	2 cut(s)	399, 767
Bsp119I	TTCGAA	1 cut(s)	936
Bsp1286I	GDGCHC	2 cut(s)	457, 1021
Bsp1407I	TGTACA	1 cut(s)	415
Bsp143I	GATC	5 cut(s)	95, 244, 370, 541, 925
BspACI	CCGC	7 cut(s)	48, 88, 347, 510, 614, 841, 1014
BspANI	GGCC	3 cut(s)	47, 426, 1076
BspCNI	CTCAG	3 cut(s)	223, 466, 934
BspFNI	CGCG	1 cut(s)	841
BspPI	GGATC	2 cut(s)	252, 365
BspT104I	TTCGAA	1 cut(s)	936
BspTNI	GGTCTC	2 cut(s)	399, 767
BsrBI	CCGCTC	1 cut(s)	510
BsrDI	GCAATG	1 cut(s)	540
BsrGI	TGTACA	1 cut(s)	415
BsrI	ACTGG	2 cut(s)	58, 101
BssECI	CCNNGG	1 cut(s)	427
BssMI	GATC	5 cut(s)	95, 244, 370, 541, 925
BssT1I	CCWWGG	1 cut(s)	427
Bst4CI	ACNGT	2 cut(s)	461, 973
BstAPI	GCANNNNNTGC	2 cut(s)	545, 554
BstAUI	TGTACA	1 cut(s)	415
BstBI	TTCGAA	1 cut(s)	936
BstDEI	CTNAG	4 cut(s)	231, 474, 528, 942
BstF5I	GGATG	5 cut(s)	187, 241, 409, 510, 889
BstFNI	CGCG	1 cut(s)	841
BstHHI	GCGC	1 cut(s)	17
BstKTI	GATC	5 cut(s)	98, 247, 373, 544, 928
BstMAI	GTCTC	4 cut(s)	399, 402, 563, 767
BstMBI	GATC	5 cut(s)	95, 244, 370, 541, 925
BstMCI	CGRYCG	2 cut(s)	48, 98
BstMWI	GCNNNNNNNGC	3 cut(s)	338, 545, 554
BstNSI	RCATGY	2 cut(s)	264, 561
BstSCI	CCNGG	2 cut(s)	586, 776
BstSFI	CTRYAG	1 cut(s)	723
BstSLI	GKGCMC	2 cut(s)	457, 1021
BstUI	CGCG	1 cut(s)	841
BstX2I	RGATCY	1 cut(s)	541
BstYI	RGATCY	1 cut(s)	541
BstZI	CGGCCG	1 cut(s)	45
BsuI	GTATCC	1 cut(s)	904
BsuRI	GGCC	3 cut(s)	47, 426, 1076
BtsCI	GGATG	5 cut(s)	187, 241, 409, 510, 889
BtsIMutI	CAGTG	1 cut(s)	1019
CfoI	GCGC	1 cut(s)	17
Cfr13I	GGNCC	1 cut(s)	1075
CseI	GACGC	1 cut(s)	847
Csp6I	GTAC	5 cut(s)	416, 617, 866, 974, 1095
CviAII	CATG	4 cut(s)	261, 558, 898, 1107
CviQI	GTAC	5 cut(s)	416, 617, 866, 974, 1095
DdeI	CTNAG	4 cut(s)	231, 474, 528, 942
DpnI	GATC	5 cut(s)	97, 246, 372, 543, 927
DpnII	GATC	5 cut(s)	95, 244, 370, 541, 925
EaeI	YGGCCR	1 cut(s)	45
EagI	CGGCCG	1 cut(s)	45
EclXI	CGGCCG	1 cut(s)	45
Eco130I	CCWWGG	1 cut(s)	427
Eco147I	AGGCCT	1 cut(s)	426
Eco31I	GGTCTC	2 cut(s)	399, 767
Eco52I	CGGCCG	1 cut(s)	45
Eco57I	CTGAAG	1 cut(s)	737
EcoT14I	CCWWGG	1 cut(s)	427
EcoT22I	ATGCAT	1 cut(s)	817
ErhI	CCWWGG	1 cut(s)	427
FaeI	CATG	4 cut(s)	264, 561, 901, 1110
FalI	AAGNNNNNCTT	2 cut(s)	818, 850
FatI	CATG	4 cut(s)	260, 557, 897, 1106
FblI	GTMKAC	1 cut(s)	726
Fnu4HI	GCNGC	1 cut(s)	48
FokI	GGATG	5 cut(s)	174, 248, 416, 517, 896
Fsp4HI	GCNGC	1 cut(s)	48
FspBI	CTAG	4 cut(s)	428, 737, 1011, 1043
GlaI	GCGC	1 cut(s)	16
GluI	GCNGC	1 cut(s)	48
GsaI	CCCAGC	1 cut(s)	243
HaeIII	GGCC	3 cut(s)	47, 426, 1076
HapII	CCGG	4 cut(s)	333, 587, 696, 778
HgaI	GACGC	1 cut(s)	847
HhaI	GCGC	1 cut(s)	17
Hin1II	CATG	4 cut(s)	264, 561, 901, 1110
Hin6I	GCGC	1 cut(s)	15
HinP1I	GCGC	1 cut(s)	15
HincII	GTYRAC	1 cut(s)	1000
HindII	GTYRAC	1 cut(s)	1000
HinfI	GANTC	7 cut(s)	61, 161, 410, 637, 748, 933, 1024
HpaII	CCGG	4 cut(s)	333, 587, 696, 778
HphI	GGTGA	2 cut(s)	16, 263
Hpy166II	GTNNAC	6 cut(s)	593, 604, 727, 976, 1000, 1019
Hpy188I	TCNGA	6 cut(s)	192, 489, 636, 756, 930, 1088
Hpy188III	TCNNGA	5 cut(s)	106, 737, 965, 1043, 1057
Hpy8I	GTNNAC	6 cut(s)	593, 604, 727, 976, 1000, 1019
HpyAV	CCTTC	4 cut(s)	101, 192, 376, 1088
HpyCH4III	ACNGT	2 cut(s)	461, 973
HpyCH4IV	ACGT	2 cut(s)	595, 782
HpyCH4V	TGCA	6 cut(s)	341, 499, 548, 557, 815, 1019
HpyF10VI	GCNNNNNNNGC	3 cut(s)	338, 545, 554
HpyF3I	CTNAG	4 cut(s)	231, 474, 528, 942
HpySE526I	ACGT	2 cut(s)	595, 782
Hsp92II	CATG	4 cut(s)	264, 561, 901, 1110
HspAI	GCGC	1 cut(s)	15
Kzo9I	GATC	5 cut(s)	95, 244, 370, 541, 925
LmnI	GCTCC	1 cut(s)	589
LweI	GCATC	4 cut(s)	226, 711, 824, 956
MaeI	CTAG	4 cut(s)	428, 737, 1011, 1043
MaeII	ACGT	2 cut(s)	595, 782
MaeIII	GTNAC	2 cut(s)	256, 958
MalI	GATC	5 cut(s)	97, 246, 372, 543, 927
MbiI	CCGCTC	1 cut(s)	510
MboI	GATC	5 cut(s)	95, 244, 370, 541, 925
MboII	GAAGA	2 cut(s)	121, 743
MfeI	CAATTG	1 cut(s)	690
MflI	RGATCY	1 cut(s)	541
MhlI	GDGCHC	2 cut(s)	457, 1021
MluCI	AATT	5 cut(s)	327, 336, 490, 690, 917
MlyI	GAGTC	2 cut(s)	404, 1018
MmeI	TCCRAC	4 cut(s)	215, 614, 831, 1066
Mph1103I	ATGCAT	1 cut(s)	817
MseI	TTAA	1 cut(s)	524
MspA1I	CMGCKG	1 cut(s)	281
MspI	CCGG	4 cut(s)	333, 587, 696, 778
MspR9I	CCNGG	2 cut(s)	588, 778
MunI	CAATTG	1 cut(s)	690
MvnI	CGCG	1 cut(s)	841
MwoI	GCNNNNNNNGC	3 cut(s)	338, 545, 554
NciI	CCSGG	2 cut(s)	588, 778
NdeII	GATC	5 cut(s)	95, 244, 370, 541, 925
NlaIII	CATG	4 cut(s)	264, 561, 901, 1110
NmeAIII	GCCGAG	1 cut(s)	23
NmuCI	GTSAC	2 cut(s)	256, 958
NsiI	ATGCAT	1 cut(s)	817
NspI	RCATGY	2 cut(s)	264, 561
NspV	TTCGAA	1 cut(s)	936
PceI	AGGCCT	1 cut(s)	426
PciI	ACATGT	1 cut(s)	260
PfeI	GAWTC	5 cut(s)	61, 161, 637, 748, 933
PflMI	CCANNNNNTGG	1 cut(s)	307
PkrI	GCNGC	1 cut(s)	49
Ple19I	CGATCG	1 cut(s)	98
PleI	GAGTC	2 cut(s)	404, 1018
PpsI	GAGTC	2 cut(s)	404, 1018
PscI	ACATGT	1 cut(s)	260
PspFI	CCCAGC	1 cut(s)	239
PspPI	GGNCC	1 cut(s)	1075
PsuI	RGATCY	1 cut(s)	541
PvuI	CGATCG	1 cut(s)	98
PvuII	CAGCTG	1 cut(s)	281
RsaI	GTAC	5 cut(s)	417, 618, 867, 975, 1096
RsaNI	GTAC	5 cut(s)	416, 617, 866, 974, 1095
SaqAI	TTAA	1 cut(s)	524
SatI	GCNGC	1 cut(s)	48
Sau3AI	GATC	5 cut(s)	95, 244, 370, 541, 925
Sau96I	GGNCC	1 cut(s)	1075
SchI	GAGTC	2 cut(s)	404, 1018
ScrFI	CCNGG	2 cut(s)	588, 778
SduI	GDGCHC	2 cut(s)	457, 1021
SfaNI	GCATC	4 cut(s)	226, 711, 824, 956
SfcI	CTRYAG	1 cut(s)	723
SfuI	TTCGAA	1 cut(s)	936
SmlI	CTYRAG	1 cut(s)	1055
SmoI	CTYRAG	1 cut(s)	1055
Sse9I	AATT	5 cut(s)	327, 336, 490, 690, 917
SseBI	AGGCCT	1 cut(s)	426
SsiI	CCGC	7 cut(s)	48, 88, 347, 510, 614, 841, 1014
SspMI	CTAG	4 cut(s)	428, 737, 1011, 1043
StuI	AGGCCT	1 cut(s)	426
StyD4I	CCNGG	2 cut(s)	586, 776
StyI	CCWWGG	1 cut(s)	427
TaaI	ACNGT	2 cut(s)	461, 973
TaiI	ACGT	2 cut(s)	598, 785
TaqI	TCGA	5 cut(s)	59, 94, 247, 903, 936
TasI	AATT	5 cut(s)	327, 336, 490, 690, 917
TatI	WGTACW	1 cut(s)	415
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	5 cut(s)	61, 161, 637, 748, 933
Tru1I	TTAA	1 cut(s)	524
Tru9I	TTAA	1 cut(s)	524
TscAI	CASTG	1 cut(s)	1026
TseFI	GTSAC	2 cut(s)	256, 958
Tsp45I	GTSAC	2 cut(s)	256, 958
TspDTI	ATGAA	2 cut(s)	378, 994
TspGWI	ACGGA	1 cut(s)	1082
TspRI	CASTG	1 cut(s)	1026
Van91I	CCANNNNNTGG	1 cut(s)	307
VneI	GTGCAC	1 cut(s)	1017
XapI	RAATTY	1 cut(s)	490
XbaI	TCTAGA	2 cut(s)	736, 1042
XceI	RCATGY	2 cut(s)	264, 561
XmaJI	CCTAGG	1 cut(s)	427
XmiI	GTMKAC	1 cut(s)	726
XspI	CTAG	4 cut(s)	428, 737, 1011, 1043
Zsp2I	ATGCAT	1 cut(s)	817

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.