Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002675

Physical Location & Seq

Genomic Coordinates Reverse (-)

24507129 .. 24508020

Gene Structure 892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG243400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 177 bp

ATGGTTGTGAATTTCGCAGATGTACATGGACGACATAAGGCTGTCTTCATCCGCAAGGACCACCGCCTCATCGTCAACATCTCCGATCTCCACTTCTTCGGCGACATCGGCAATAGTATAAATGATGCTCAGGACTTAACTGATGAAAGAAGGTACATTGATCAGCGAACAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

58

Amino Acids

6.81

Weight (kDa)

6.9

Isoelectric Point (pI)

26.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01350 AT2G01350 AT2G01350 AT2G01350
fragaria_vesca	FvH4_4g32330 FvH4_4g32330 FvH4_4g32330 FvH4_4g32330
malus_domestica	MD16G1029000.v1.1
prunus_persica	Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1
pyrus_communis	pycom16g02470
rosa_chinensis	RchiOBHm_Chr2g0157601 RchiOBHm_Chr4g0441121
rosa_laevigata	RLG00000006112
rosa_multiflora	Rmu_sc0000607.1_g000026 Rmu_sc0006317.1_g000018 Rmu_sc0017059.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382090
rosa_rugosa	Rorug03G0337500 Rorug04G0331400
rosa_samantha	Rh1AG340100 Rh2BG059800 Rh2BG243400 Rh2BG348100 Rh2DG286800 Rh3BG365900 Rh4AG382900 Rh4BG396800 Rh4CG411800 Rh4DG389700 Rh5BG215200 Rh5BG425100 Rh6BG216200 Rh6DG027200
rosa_wichuraiana	Rw4G033050 Rw6G003900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	52, 64
AcsI	RAATTY	1 cut(s)	10
AfaI	GTAC	2 cut(s)	24, 155
ApoI	RAATTY	1 cut(s)	10
AspS9I	GGNCC	1 cut(s)	58
AvaII	GGWCC	1 cut(s)	58
BbsI	GAAGAC	1 cut(s)	37
BclI	TGATCA	1 cut(s)	160
Bme18I	GGWCC	1 cut(s)	58
BmgT120I	GGNCC	1 cut(s)	58
BmsI	GCATC	1 cut(s)	115
BpiI	GAAGAC	1 cut(s)	37
Bpu10I	CCTNAGC	1 cut(s)	129
BseGI	GGATG	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	143
Bsp1407I	TGTACA	1 cut(s)	22
Bsp143I	GATC	2 cut(s)	85, 160
BspACI	CCGC	2 cut(s)	52, 64
BspCNI	CTCAG	1 cut(s)	142
BsrGI	TGTACA	1 cut(s)	22
BssMI	GATC	2 cut(s)	85, 160
BstAUI	TGTACA	1 cut(s)	22
BstDEI	CTNAG	1 cut(s)	129
BstF5I	GGATG	1 cut(s)	48
BstKTI	GATC	2 cut(s)	88, 163
BstMBI	GATC	2 cut(s)	85, 160
BstMWI	GCNNNNNNNGC	1 cut(s)	108
BstV2I	GAAGAC	1 cut(s)	37
BtsCI	GGATG	1 cut(s)	48
Cfr13I	GGNCC	1 cut(s)	58
Csp6I	GTAC	2 cut(s)	23, 154
CviAII	CATG	1 cut(s)	26
CviJI	RGCY	1 cut(s)	41
CviKI_1	RGCY	1 cut(s)	41
CviQI	GTAC	2 cut(s)	23, 154
DdeI	CTNAG	1 cut(s)	129
DpnI	GATC	2 cut(s)	87, 162
DpnII	GATC	2 cut(s)	85, 160
Eco47I	GGWCC	1 cut(s)	58
FaeI	CATG	1 cut(s)	29
FaiI	YATR	3 cut(s)	27, 36, 119
FalI	AAGNNNNNCTT	2 cut(s)	29, 61
FatI	CATG	1 cut(s)	25
FbaI	TGATCA	1 cut(s)	160
FokI	GGATG	1 cut(s)	35
Hin1II	CATG	1 cut(s)	29
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	1 cut(s)	85
Hpy188III	TCNNGA	1 cut(s)	131
Hpy8I	GTNNAC	1 cut(s)	76
HpyAV	CCTTC	1 cut(s)	144
HpyF10VI	GCNNNNNNNGC	1 cut(s)	108
HpyF3I	CTNAG	1 cut(s)	129
Hsp92II	CATG	1 cut(s)	29
Ksp22I	TGATCA	1 cut(s)	160
Kzo9I	GATC	2 cut(s)	85, 160
LpnPI	CCDG	1 cut(s)	116
LweI	GCATC	1 cut(s)	115
MalI	GATC	2 cut(s)	87, 162
MboI	GATC	2 cut(s)	85, 160
MboII	GAAGA	2 cut(s)	37, 88
MluCI	AATT	1 cut(s)	10
MnlI	CCTC	1 cut(s)	77
MseI	TTAA	1 cut(s)	137
MwoI	GCNNNNNNNGC	1 cut(s)	108
NdeII	GATC	2 cut(s)	85, 160
NlaIII	CATG	1 cut(s)	29
PspPI	GGNCC	1 cut(s)	58
RsaI	GTAC	2 cut(s)	24, 155
RsaNI	GTAC	2 cut(s)	23, 154
SaqAI	TTAA	1 cut(s)	137
Sau3AI	GATC	2 cut(s)	85, 160
Sau96I	GGNCC	1 cut(s)	58
SetI	ASST	1 cut(s)	155
SfaNI	GCATC	1 cut(s)	115
SgeI	CNNG	3 cut(s)	38, 67, 143
SinI	GGWCC	1 cut(s)	58
Sse9I	AATT	1 cut(s)	10
SsiI	CCGC	2 cut(s)	52, 64
TasI	AATT	1 cut(s)	10
TatI	WGTACW	1 cut(s)	22
Tru1I	TTAA	1 cut(s)	137
Tru9I	TTAA	1 cut(s)	137
TspDTI	ATGAA	2 cut(s)	37, 159
VpaK11BI	GGWCC	1 cut(s)	58
XapI	RAATTY	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.