Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002675

Physical Location & Seq

Genomic Coordinates Reverse (-)

24845677 .. 24857567

Gene Structure 11891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG215200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGACGACATCAAGGCAGTCCTCGACCGCAAGGACCACTGCCTCAACGTCAACAACTCCGATCTCCACTTCTTCGGCGACCTCGGCAATAGGAGACTGCTTCAGAGGATTGTGCTCGAAGCCCTCCATGAGAGAATCACTGCTCTGCGGTGGGAGTCTGCTCTCAAGATGATGAAGCTGAGGCATAAGATCGAGAGGGAACAGAACATTGGGATGAAGCAGAGGCATAAGATCGAGAGGGAACAGAACATTGGGGAAGAAGTTGGATGGTCCAAAAATGTGAAAGTTGCAAAGTGGTTCAATTCGGTGGGTTCAATTCACTCTCTCAACTATCTTCTCTCTTCCATCAATGGGTTCAATTCAGTTAGTTTAAATTATGAAATGGAAGAGATAAAATTTATCAGTGGATCTGTAGACAACAAGAAGGGGGATCTAGAGTTGCAACAGGCGATATACTCAACTACCTTCAGGATTGAACGATTGGAATTGTTTGATGAATTTGAAGAATGGCACATGATGCAGGCAAGTCAACTCCTCCTTTCTGTCGTAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

184

Amino Acids

21.62

Weight (kDa)

6.67

Isoelectric Point (pI)

49.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01350 AT2G01350 AT2G01350 AT2G01350
fragaria_vesca	FvH4_4g32330 FvH4_4g32330 FvH4_4g32330 FvH4_4g32330
malus_domestica	MD16G1029000.v1.1
prunus_persica	Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1
pyrus_communis	pycom16g02470
rosa_chinensis	RchiOBHm_Chr2g0157601 RchiOBHm_Chr4g0441121
rosa_laevigata	RLG00000006112
rosa_multiflora	Rmu_sc0000607.1_g000026 Rmu_sc0006317.1_g000018 Rmu_sc0017059.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382090
rosa_rugosa	Rorug03G0337500 Rorug04G0331400
rosa_samantha	Rh1AG340100 Rh2BG059800 Rh2BG243400 Rh2BG348100 Rh2DG286800 Rh3BG365900 Rh4AG382900 Rh4BG396800 Rh4CG411800 Rh4DG389700 Rh5BG215200 Rh5BG425100 Rh6BG216200 Rh6DG027200
rosa_wichuraiana	Rw4G033050 Rw6G003900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	414
AciI	CCGC	2 cut(s)	28, 148
AclWI	GGATC	2 cut(s)	415, 438
AcsI	RAATTY	2 cut(s)	395, 497
AcuI	CTGAAG	2 cut(s)	86, 451
AfiI	CCNNNNNNNGG	1 cut(s)	351
AgsI	TTSAA	5 cut(s)	301, 315, 358, 476, 503
AjuI	GAANNNNNNNTTGG	4 cut(s)	192, 224, 234, 266
AluBI	AGCT	1 cut(s)	178
AluI	AGCT	1 cut(s)	178
Alw21I	GWGCWC	1 cut(s)	117
Alw26I	GTCTC	1 cut(s)	88
AlwI	GGATC	2 cut(s)	415, 438
ApoI	RAATTY	2 cut(s)	395, 497
AspS9I	GGNCC	2 cut(s)	34, 270
AvaII	GGWCC	2 cut(s)	34, 270
Bbv12I	GWGCWC	1 cut(s)	117
BbvCI	CCTCAGC	1 cut(s)	179
BccI	CCATC	2 cut(s)	261, 353
BcoDI	GTCTC	1 cut(s)	88
BfaI	CTAG	1 cut(s)	434
BfmI	CTRYAG	1 cut(s)	411
Bme18I	GGWCC	2 cut(s)	34, 270
BmgT120I	GGNCC	2 cut(s)	34, 270
BmsI	GCATC	1 cut(s)	507
Bpu10I	CCTNAGC	1 cut(s)	179
BpuEI	CTTGAG	1 cut(s)	149
BsaJI	CCNNGG	1 cut(s)	82
Bsc4I	CCNNNNNNNGG	1 cut(s)	351
BseDI	CCNNGG	1 cut(s)	82
BseGI	GGATG	2 cut(s)	219, 272
BseLI	CCNNNNNNNGG	1 cut(s)	351
BseMII	CTCAG	1 cut(s)	170
BseRI	GAGGAG	1 cut(s)	524
Bsh1285I	CGRYCG	1 cut(s)	28
BsiEI	CGRYCG	1 cut(s)	28
BsiHKAI	GWGCWC	1 cut(s)	117
BslI	CCNNNNNNNGG	1 cut(s)	351
BsmAI	GTCTC	1 cut(s)	88
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp143I	GATC	5 cut(s)	61, 189, 231, 407, 430
BspACI	CCGC	2 cut(s)	28, 148
BspCNI	CTCAG	1 cut(s)	171
BspPI	GGATC	2 cut(s)	415, 438
BssECI	CCNNGG	1 cut(s)	82
BssMI	GATC	5 cut(s)	61, 189, 231, 407, 430
Bst6I	CTCTTC	2 cut(s)	346, 381
BstAPI	GCANNNNNTGC	1 cut(s)	517
BstC8I	GCNNGC	1 cut(s)	522
BstDEI	CTNAG	1 cut(s)	179
BstF5I	GGATG	2 cut(s)	219, 272
BstKTI	GATC	5 cut(s)	64, 192, 234, 410, 433
BstMAI	GTCTC	1 cut(s)	88
BstMBI	GATC	5 cut(s)	61, 189, 231, 407, 430
BstMCI	CGRYCG	1 cut(s)	28
BstMWI	GCNNNNNNNGC	2 cut(s)	84, 517
BstSFI	CTRYAG	1 cut(s)	411
BstX2I	RGATCY	2 cut(s)	407, 430
BstYI	RGATCY	2 cut(s)	407, 430
BtsCI	GGATG	2 cut(s)	219, 272
BtsI	GCAGTG	2 cut(s)	37, 138
BtsIMutI	CAGTG	3 cut(s)	37, 138, 409
Cac8I	GCNNGC	1 cut(s)	522
Cfr13I	GGNCC	2 cut(s)	34, 270
CviAII	CATG	2 cut(s)	128, 514
CviJI	RGCY	2 cut(s)	122, 178
CviKI_1	RGCY	2 cut(s)	122, 178
DdeI	CTNAG	1 cut(s)	179
DpnI	GATC	5 cut(s)	63, 191, 233, 409, 432
DpnII	GATC	5 cut(s)	61, 189, 231, 407, 430
DraI	TTTAAA	1 cut(s)	372
Eam1104I	CTCTTC	2 cut(s)	346, 381
EarI	CTCTTC	2 cut(s)	346, 381
Eco47I	GGWCC	2 cut(s)	34, 270
Eco57I	CTGAAG	2 cut(s)	86, 451
FaeI	CATG	2 cut(s)	131, 517
FaiI	YATR	6 cut(s)	129, 186, 228, 378, 454, 515
FatI	CATG	2 cut(s)	127, 513
FblI	GTMKAC	1 cut(s)	414
FokI	GGATG	2 cut(s)	226, 279
FspBI	CTAG	1 cut(s)	434
Hin1II	CATG	2 cut(s)	131, 517
HincII	GTYRAC	2 cut(s)	52, 530
HindII	GTYRAC	2 cut(s)	52, 530
HinfI	GANTC	2 cut(s)	135, 155
Hpy166II	GTNNAC	3 cut(s)	52, 415, 530
Hpy188I	TCNGA	2 cut(s)	61, 105
Hpy188III	TCNNGA	5 cut(s)	166, 193, 235, 434, 469
Hpy8I	GTNNAC	3 cut(s)	52, 415, 530
HpyAV	CCTTC	2 cut(s)	418, 475
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	3 cut(s)	290, 442, 520
HpyF10VI	GCNNNNNNNGC	2 cut(s)	84, 517
HpyF3I	CTNAG	1 cut(s)	179
HpySE526I	ACGT	1 cut(s)	48
Hsp92II	CATG	2 cut(s)	131, 517
Kzo9I	GATC	5 cut(s)	61, 189, 231, 407, 430
LpnPI	CCDG	3 cut(s)	431, 454, 506
LweI	GCATC	1 cut(s)	507
MaeI	CTAG	1 cut(s)	434
MaeII	ACGT	1 cut(s)	48
MalI	GATC	5 cut(s)	63, 191, 233, 409, 432
MboI	GATC	5 cut(s)	61, 189, 231, 407, 430
MboII	GAAGA	6 cut(s)	64, 269, 326, 333, 398, 515
MflI	RGATCY	2 cut(s)	407, 430
MhlI	GDGCHC	1 cut(s)	117
MluCI	AATT	7 cut(s)	301, 315, 358, 373, 395, 485, 497
MlyI	GAGTC	1 cut(s)	164
MmeI	TCCRAC	1 cut(s)	244
MseI	TTAA	1 cut(s)	371
MslI	CAYNNNNRTG	1 cut(s)	212
MwoI	GCNNNNNNNGC	2 cut(s)	84, 517
NdeII	GATC	5 cut(s)	61, 189, 231, 407, 430
NlaIII	CATG	2 cut(s)	131, 517
NmeAIII	GCCGAG	1 cut(s)	63
PfeI	GAWTC	1 cut(s)	135
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
PspPI	GGNCC	2 cut(s)	34, 270
PsuI	RGATCY	2 cut(s)	407, 430
RseI	CAYNNNNRTG	1 cut(s)	212
SaqAI	TTAA	1 cut(s)	371
Sau3AI	GATC	5 cut(s)	61, 189, 231, 407, 430
Sau96I	GGNCC	2 cut(s)	34, 270
SchI	GAGTC	1 cut(s)	164
SduI	GDGCHC	1 cut(s)	117
SetI	ASST	4 cut(s)	51, 84, 180, 467
SfaNI	GCATC	1 cut(s)	507
SfcI	CTRYAG	1 cut(s)	411
SinI	GGWCC	2 cut(s)	34, 270
SmiMI	CAYNNNNRTG	1 cut(s)	212
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	7 cut(s)	301, 315, 358, 373, 395, 485, 497
SsiI	CCGC	2 cut(s)	28, 148
SspMI	CTAG	1 cut(s)	434
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	4 cut(s)	24, 117, 192, 234
TasI	AATT	7 cut(s)	301, 315, 358, 373, 395, 485, 497
TfiI	GAWTC	1 cut(s)	135
Tru1I	TTAA	1 cut(s)	371
Tru9I	TTAA	1 cut(s)	371
TscAI	CASTG	3 cut(s)	44, 145, 409
TspDTI	ATGAA	4 cut(s)	188, 230, 393, 510
TspRI	CASTG	3 cut(s)	44, 145, 409
VpaK11BI	GGWCC	2 cut(s)	34, 270
XapI	RAATTY	2 cut(s)	395, 497
XbaI	TCTAGA	1 cut(s)	433
XmiI	GTMKAC	1 cut(s)	414
XspI	CTAG	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.