Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002675

Physical Location & Seq

Genomic Coordinates Reverse (-)

68798663 .. 68833622

Gene Structure 34960 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG425100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGAGAATTGAAGACTTGGTCTTTTACTCCAACATGCAATTGATACCAGCCCCACAATTGATAGAAGAATTATTAACGAGAGCACCAAAGGATCCTGTTGAACCCGAAAAAGTTCTTAAAGCAGCCCAAGTCAAACTCGTCCTCACCACTCAAGTCACTCATCACCATTGCAAGATTGTTGCTTTAACTATAGGTGATGTGACATGTCTGGCTACCATTCCATCTGAGATGGAAGTAGAAGCCCACTTCTTGGCAAAGGAGAATTGTATAGTTGCTGGAATTGCACTTGCAGAGATGGTATTTTATGAAGTTGATCCCACTCTAAAGGTTGAGTGGTCACAAAAGGATGGAGATTCCGTACATAAAGGCTTAGAGTCTGGAAAAGTTTATGGAAACTCCGGAGTATCAGTAATCTTTCTTGTCGTAGTTGTTTATGGGGATTTTGCTATAGACAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004514 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009165 GO:0009435 GO:0009507 GO:0009536 GO:0009987 GO:0016054 GO:0016740 GO:0016757 GO:0016763 GO:0017144 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0019752 GO:0034213 GO:0034641 GO:0034654 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043649 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046483 GO:0046496 GO:0046700 GO:0046874 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072524 GO:0072525 GO:0072526 GO:0090407 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

QRPTase_C QRPTase_N

Protein Analysis

152

Amino Acids

16.69

Weight (kDa)

4.91

Isoelectric Point (pI)

24.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QRPTase_N	PF02749	66 - 129	7.7e-12	Quinolinate phosphoribosyl transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01350 AT2G01350 AT2G01350 AT2G01350
fragaria_vesca	FvH4_4g32330 FvH4_4g32330 FvH4_4g32330 FvH4_4g32330
malus_domestica	MD16G1029000.v1.1
prunus_persica	Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1
pyrus_communis	pycom16g02470
rosa_chinensis	RchiOBHm_Chr2g0157601 RchiOBHm_Chr4g0441121
rosa_laevigata	RLG00000006112
rosa_multiflora	Rmu_sc0000607.1_g000026 Rmu_sc0006317.1_g000018 Rmu_sc0017059.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382090
rosa_rugosa	Rorug03G0337500 Rorug04G0331400
rosa_samantha	Rh1AG340100 Rh2BG059800 Rh2BG243400 Rh2BG348100 Rh2DG286800 Rh3BG365900 Rh4AG382900 Rh4BG396800 Rh4CG411800 Rh4DG389700 Rh5BG215200 Rh5BG425100 Rh6BG216200 Rh6DG027200
rosa_wichuraiana	Rw4G033050 Rw6G003900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	250
AccIII	TCCGGA	1 cut(s)	398
AclWI	GGATC	3 cut(s)	86, 99, 308
AfaI	GTAC	1 cut(s)	360
AfiI	CCNNNNNNNGG	1 cut(s)	250
AflIII	ACRYGT	1 cut(s)	203
AgsI	TTSAA	2 cut(s)	11, 101
AluBI	AGCT	1 cut(s)	456
AluI	AGCT	1 cut(s)	456
Alw21I	GWGCWC	1 cut(s)	85
AlwI	GGATC	3 cut(s)	86, 99, 308
Aor13HI	TCCGGA	1 cut(s)	398
ApeKI	GCWGC	1 cut(s)	122
Asp700I	GAANNNNTTC	1 cut(s)	111
AsuHPI	GGTGA	3 cut(s)	136, 155, 206
BamHI	GGATCC	1 cut(s)	91
BbsI	GAAGAC	1 cut(s)	18
Bbv12I	GWGCWC	1 cut(s)	85
BbvI	GCAGC	1 cut(s)	134
BccI	CCATC	4 cut(s)	223, 229, 289, 341
BfaI	CTAG	1 cut(s)	457
BfmI	CTRYAG	2 cut(s)	189, 447
BisI	GCNGC	1 cut(s)	123
BlsI	GCNGC	1 cut(s)	124
BmiI	GGNNCC	1 cut(s)	93
BpiI	GAAGAC	1 cut(s)	18
BpuEI	CTTGAG	1 cut(s)	135
BsaWI	WCCGGW	1 cut(s)	398
BsaXI	ACNNNNNCTCC	4 cut(s)	342, 372, 393, 423
Bsc4I	CCNNNNNNNGG	1 cut(s)	250
Bse3DI	GCAATG	1 cut(s)	166
BseAI	TCCGGA	1 cut(s)	398
BseGI	GGATG	1 cut(s)	352
BseLI	CCNNNNNNNGG	1 cut(s)	250
BseMI	GCAATG	1 cut(s)	166
BseMII	CTCAG	1 cut(s)	216
BseXI	GCAGC	1 cut(s)	134
BsiHKAI	GWGCWC	1 cut(s)	85
BsiSI	CCGG	1 cut(s)	399
BslI	CCNNNNNNNGG	1 cut(s)	250
Bsp1286I	GDGCHC	1 cut(s)	85
Bsp13I	TCCGGA	1 cut(s)	398
Bsp143I	GATC	2 cut(s)	91, 313
BspCNI	CTCAG	1 cut(s)	217
BspEI	TCCGGA	1 cut(s)	398
BspLI	GGNNCC	1 cut(s)	93
BspPI	GGATC	3 cut(s)	86, 99, 308
BsrDI	GCAATG	1 cut(s)	166
BssMI	GATC	2 cut(s)	91, 313
BstDEI	CTNAG	2 cut(s)	225, 370
BstF5I	GGATG	1 cut(s)	352
BstKTI	GATC	2 cut(s)	94, 316
BstMBI	GATC	2 cut(s)	91, 313
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstNSI	RCATGY	2 cut(s)	37, 207
BstSFI	CTRYAG	2 cut(s)	189, 447
BstV1I	GCAGC	1 cut(s)	134
BstV2I	GAAGAC	1 cut(s)	18
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
BtsCI	GGATG	1 cut(s)	352
Csp6I	GTAC	1 cut(s)	359
CviAII	CATG	2 cut(s)	34, 204
CviJI	RGCY	6 cut(s)	50, 125, 212, 242, 369, 456
CviKI_1	RGCY	6 cut(s)	50, 125, 212, 242, 369, 456
CviQI	GTAC	1 cut(s)	359
DdeI	CTNAG	2 cut(s)	225, 370
DpnI	GATC	2 cut(s)	93, 315
DpnII	GATC	2 cut(s)	91, 313
FaeI	CATG	2 cut(s)	37, 207
FaiI	YATR	9 cut(s)	35, 191, 205, 269, 306, 363, 390, 435, 449
FatI	CATG	2 cut(s)	33, 203
Fnu4HI	GCNGC	1 cut(s)	123
FokI	GGATG	1 cut(s)	359
Fsp4HI	GCNGC	1 cut(s)	123
FspBI	CTAG	1 cut(s)	457
GluI	GCNGC	1 cut(s)	123
HapII	CCGG	1 cut(s)	399
Hin1II	CATG	2 cut(s)	37, 207
HinfI	GANTC	2 cut(s)	353, 374
HpaII	CCGG	1 cut(s)	399
HphI	GGTGA	3 cut(s)	136, 155, 206
Hpy188I	TCNGA	1 cut(s)	226
Hpy188III	TCNNGA	2 cut(s)	378, 399
HpyCH4V	TGCA	4 cut(s)	37, 171, 284, 290
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpyF3I	CTNAG	2 cut(s)	225, 370
Hsp92II	CATG	2 cut(s)	37, 207
Kpn2I	TCCGGA	1 cut(s)	398
Kzo9I	GATC	2 cut(s)	91, 313
LpnPI	CCDG	6 cut(s)	60, 108, 194, 261, 363, 412
Lsp1109I	GCAGC	1 cut(s)	134
MaeI	CTAG	1 cut(s)	457
MaeIII	GTNAC	3 cut(s)	154, 199, 336
MalI	GATC	2 cut(s)	93, 315
MboI	GATC	2 cut(s)	91, 313
MboII	GAAGA	2 cut(s)	23, 77
MfeI	CAATTG	2 cut(s)	38, 56
MflI	RGATCY	1 cut(s)	91
MhlI	GDGCHC	1 cut(s)	85
MluCI	AATT	6 cut(s)	6, 38, 56, 68, 262, 279
MlyI	GAGTC	1 cut(s)	383
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	1 cut(s)	152
MroI	TCCGGA	1 cut(s)	398
MroXI	GAANNNNTTC	1 cut(s)	111
MseI	TTAA	3 cut(s)	74, 117, 185
MspI	CCGG	1 cut(s)	399
MunI	CAATTG	2 cut(s)	38, 56
MwoI	GCNNNNNNNGC	1 cut(s)	281
NdeII	GATC	2 cut(s)	91, 313
NlaIII	CATG	2 cut(s)	37, 207
NlaIV	GGNNCC	1 cut(s)	93
NmuCI	GTSAC	3 cut(s)	154, 199, 336
NspI	RCATGY	2 cut(s)	37, 207
PciI	ACATGT	1 cut(s)	203
PdmI	GAANNNNTTC	1 cut(s)	111
PfeI	GAWTC	1 cut(s)	353
PflFI	GACNNNGTC	1 cut(s)	17
PflMI	CCANNNNNTGG	1 cut(s)	250
PkrI	GCNGC	1 cut(s)	124
PleI	GAGTC	1 cut(s)	382
PpsI	GAGTC	1 cut(s)	382
PscI	ACATGT	1 cut(s)	203
PspN4I	GGNNCC	1 cut(s)	93
PsuI	RGATCY	1 cut(s)	91
PsyI	GACNNNGTC	1 cut(s)	17
RsaI	GTAC	1 cut(s)	360
RsaNI	GTAC	1 cut(s)	359
SaqAI	TTAA	3 cut(s)	74, 117, 185
SatI	GCNGC	1 cut(s)	123
Sau3AI	GATC	2 cut(s)	91, 313
SchI	GAGTC	1 cut(s)	383
SduI	GDGCHC	1 cut(s)	85
SetI	ASST	3 cut(s)	196, 330, 458
SfcI	CTRYAG	2 cut(s)	189, 447
SmlI	CTYRAG	1 cut(s)	150
SmoI	CTYRAG	1 cut(s)	150
Sse9I	AATT	6 cut(s)	6, 38, 56, 68, 262, 279
SspMI	CTAG	1 cut(s)	457
TasI	AATT	6 cut(s)	6, 38, 56, 68, 262, 279
TfiI	GAWTC	1 cut(s)	353
Tru1I	TTAA	3 cut(s)	74, 117, 185
Tru9I	TTAA	3 cut(s)	74, 117, 185
TseFI	GTSAC	3 cut(s)	154, 199, 336
TseI	GCWGC	1 cut(s)	122
Tsp45I	GTSAC	3 cut(s)	154, 199, 336
TspDTI	ATGAA	1 cut(s)	321
TspGWI	ACGGA	1 cut(s)	346
Tth111I	GACNNNGTC	1 cut(s)	17
Van91I	CCANNNNNTGG	1 cut(s)	250
XceI	RCATGY	2 cut(s)	37, 207
XmnI	GAANNNNTTC	1 cut(s)	111
XspI	CTAG	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.