Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002675

Physical Location & Seq

Genomic Coordinates Reverse (-)

31032366 .. 31036461

Gene Structure 4096 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g32330.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGCCTTTGCCGCCTCTTCTTCTTCGTCTTTATCTTTCCCTCTGCAAAAGTCGTGCAGAGCTTACCCGCCAACTGGGATTCTCTACGGCCTTCCTTTCACCTCCCGCCTGCGCTCTCCAATCAGGCAGATTATTAGAATGTCAGCAACGCAAGCTGAAAGGCCCGGTTTGTCATTTGAATCCCTACCGATAAAGCCTCCTTCGCATCCGACTTATGATCTAGCGGGTGTCATCAAGTCAGCCCTTGCTGAAGACGCTGGGGATCGAGGCGATGTGACATGTCTGGCTACCATTCCACCTGATATGGAAGTTGAAGCCCACTTCTTGGCAAAGGAGAATGGTATAGTTGCCGGAATTGCACTTGCAGAGATGGTATTTTATGAAGTTGATCCCACTCTGAAGGTTGAGTGGTCACAAAAGGATGGAGACTCCATACATAAAGGCTTACAGTTCGGCAAAGTTTATGGAAGAGCACACAGCATTGTTATAGCTGAGAGGGTAGTACTGAATTTTATGCAGAGGATGAGTGGAGTAGCAACTTTAACTAGGGCAATGGCAGATCTTGCAAGCCCTGCATGTATTTTAGAGACGAGAAAAACTGCTCCAGGTTTACGTTTGGTAGACAAGTGGGCGGTACTCATTGGTGGTGGTAAAAATCACAGAATGGGCTTATTTGATATGGTAATGATAAAAGATAATCATATATCAATAGCTGGAGGCATAACGAATGCCCTCGAGTCTGTAGACCTCTATCTTCAGCAAAGGAATCTTCAGATGGAGGTTGAGGTGGAGACCCGGACAATTGAGGAAGTAAACCAAGTGTTGGACTATGCATCTAGAACAAAGACTTCCTTGACCCGGATAATGTTGGATAATATGGTTGTACCACTATCAAATGGTGATGTTGATGTCAGCATGCTTGAACAAGCCGTGAATTTGATTAAACGGAGATTTGAGACAGAGGCATCTGGAAATGTCACTCTTGAAACAGTACATAAAATTGGACAAACTGGAGTGGACTACATTTCTAGTGGTGCACTGACACATTCTGTTAAAGCTCTGGACATCTCCCTCAAGATTGATACCGAGTTGGCTCTTCAAGTTGGAAGGCGTACAAAACGAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004514 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009165 GO:0009435 GO:0009507 GO:0009536 GO:0009987 GO:0016054 GO:0016740 GO:0016757 GO:0016763 GO:0017144 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0019752 GO:0034213 GO:0034641 GO:0034654 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043649 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046483 GO:0046496 GO:0046700 GO:0046874 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072524 GO:0072525 GO:0072526 GO:0090407 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

QRPTase_C QRPTase_N

Protein Analysis

376

Amino Acids

40.97

Weight (kDa)

6.73

Isoelectric Point (pI)

39.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QRPTase_N	PF02749	45 - 130	2.4e-22	Quinolinate phosphoribosyl transferase, N-terminal domain
QRPTase_C	PF01729	132 - 313	2.4e-51	Quinolinate phosphoribosyl transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01350 AT2G01350 AT2G01350 AT2G01350
fragaria_vesca	FvH4_4g32330 FvH4_4g32330 FvH4_4g32330 FvH4_4g32330
malus_domestica	MD16G1029000.v1.1
prunus_persica	Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1
pyrus_communis	pycom16g02470
rosa_chinensis	RchiOBHm_Chr2g0157601 RchiOBHm_Chr4g0441121
rosa_laevigata	RLG00000006112
rosa_multiflora	Rmu_sc0000607.1_g000026 Rmu_sc0006317.1_g000018 Rmu_sc0017059.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382090
rosa_rugosa	Rorug03G0337500 Rorug04G0331400
rosa_samantha	Rh1AG340100 Rh2BG059800 Rh2BG243400 Rh2BG348100 Rh2DG286800 Rh3BG365900 Rh4AG382900 Rh4BG396800 Rh4CG411800 Rh4DG389700 Rh5BG215200 Rh5BG425100 Rh6BG216200 Rh6DG027200
rosa_wichuraiana	Rw4G033050 Rw6G003900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	325, 823
AccI	GTMKAC	2 cut(s)	621, 744
AciI	CCGC	5 cut(s)	12, 68, 106, 224, 632
AclWI	GGATC	2 cut(s)	270, 383
AcsI	RAATTY	2 cut(s)	508, 934
AcuI	CTGAAG	4 cut(s)	270, 419, 740, 755
AfaI	GTAC	5 cut(s)	504, 636, 885, 993, 1114
AfiI	CCNNNNNNNGG	4 cut(s)	74, 325, 823, 858
AflIII	ACRYGT	1 cut(s)	278
AgsI	TTSAA	5 cut(s)	179, 314, 923, 986, 1100
AjnI	CCWGG	1 cut(s)	604
AluBI	AGCT	5 cut(s)	62, 155, 491, 713, 1058
AluI	AGCT	5 cut(s)	62, 155, 491, 713, 1058
Alw21I	GWGCWC	2 cut(s)	475, 1039
Alw26I	GTCTC	4 cut(s)	420, 581, 785, 950
Alw44I	GTGCAC	1 cut(s)	1035
AlwI	GGATC	2 cut(s)	270, 383
Ama87I	CYCGRG	1 cut(s)	734
AoxI	GGCC	3 cut(s)	3, 88, 161
ApaLI	GTGCAC	1 cut(s)	1035
ApoI	RAATTY	2 cut(s)	508, 934
AspLEI	GCGC	1 cut(s)	114
AspS9I	GGNCC	1 cut(s)	162
AsuC2I	CCSGG	3 cut(s)	165, 796, 859
AsuHPI	GGTGA	2 cut(s)	91, 911
AvaI	CYCGRG	1 cut(s)	734
BaeGI	GKGCMC	1 cut(s)	1039
BbsI	GAAGAC	1 cut(s)	258
Bbv12I	GWGCWC	2 cut(s)	475, 1039
BccI	CCATC	3 cut(s)	364, 416, 769
BceAI	ACGGC	2 cut(s)	103, 914
BciT130I	CCWGG	1 cut(s)	606
BcnI	CCSGG	3 cut(s)	165, 796, 859
BcoDI	GTCTC	4 cut(s)	420, 581, 785, 950
BfaI	CTAG	4 cut(s)	221, 546, 837, 1029
BfmI	CTRYAG	1 cut(s)	741
BglII	AGATCT	1 cut(s)	559
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
BmcAI	AGTACT	1 cut(s)	504
Bme1390I	CCNGG	4 cut(s)	165, 606, 796, 859
BmeT110I	CYCGRG	1 cut(s)	734
BmgT120I	GGNCC	1 cut(s)	162
BmrFI	CCNGG	4 cut(s)	165, 606, 796, 859
BmrI	ACTGGG	1 cut(s)	84
BmsI	GCATC	3 cut(s)	214, 842, 974
BmuI	ACTGGG	1 cut(s)	84
BpiI	GAAGAC	1 cut(s)	258
BpmI	CTGGAG	3 cut(s)	588, 735, 1032
BpuEI	CTTGAG	1 cut(s)	1058
BpuMI	CCSGG	3 cut(s)	165, 796, 859
BsaI	GGTCTC	1 cut(s)	785
Bsc4I	CCNNNNNNNGG	4 cut(s)	74, 325, 823, 858
Bse1I	ACTGG	2 cut(s)	79, 1015
Bse3DI	GCAATG	1 cut(s)	558
BseBI	CCWGG	1 cut(s)	606
BseGI	GGATG	3 cut(s)	205, 427, 528
BseLI	CCNNNNNNNGG	4 cut(s)	74, 325, 823, 858
BseMI	GCAATG	1 cut(s)	558
BseMII	CTCAG	1 cut(s)	483
BseNI	ACTGG	2 cut(s)	79, 1015
BseSI	GKGCMC	1 cut(s)	1039
BseYI	CCCAGC	1 cut(s)	257
BsgI	GTGCAG	1 cut(s)	76
BshFI	GGCC	3 cut(s)	5, 90, 163
BsiHKAI	GWGCWC	2 cut(s)	475, 1039
BsiHKCI	CYCGRG	1 cut(s)	734
BsiSI	CCGG	4 cut(s)	165, 351, 796, 859
BslI	CCNNNNNNNGG	4 cut(s)	74, 325, 823, 858
BsmAI	GTCTC	4 cut(s)	420, 581, 785, 950
BsmBI	CGTCTC	1 cut(s)	581
BsmI	GAATGC	1 cut(s)	733
BsnI	GGCC	3 cut(s)	5, 90, 163
Bso31I	GGTCTC	1 cut(s)	785
BsoBI	CYCGRG	1 cut(s)	734
Bsp1286I	GDGCHC	2 cut(s)	475, 1039
Bsp143I	GATC	4 cut(s)	217, 262, 388, 559
BspACI	CCGC	5 cut(s)	12, 68, 106, 224, 632
BspANI	GGCC	3 cut(s)	5, 90, 163
BspCNI	CTCAG	1 cut(s)	484
BspPI	GGATC	2 cut(s)	270, 383
BspQI	GCTCTTC	2 cut(s)	463, 1101
BspTNI	GGTCTC	1 cut(s)	785
BsrDI	GCAATG	1 cut(s)	558
BsrI	ACTGG	2 cut(s)	79, 1015
BssMI	GATC	4 cut(s)	217, 262, 388, 559
Bst2UI	CCWGG	1 cut(s)	606
Bst4CI	ACNGT	2 cut(s)	450, 991
Bst6I	CTCTTC	3 cut(s)	22, 463, 1101
BstAPI	GCANNNNNTGC	2 cut(s)	563, 572
BstC8I	GCNNGC	4 cut(s)	110, 153, 568, 917
BstDEI	CTNAG	1 cut(s)	492
BstF5I	GGATG	3 cut(s)	205, 427, 528
BstHHI	GCGC	1 cut(s)	114
BstKTI	GATC	4 cut(s)	220, 265, 391, 562
BstMAI	GTCTC	4 cut(s)	420, 581, 785, 950
BstMBI	GATC	4 cut(s)	217, 262, 388, 559
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 152, 202, 254, 356, 563, 572
BstNI	CCWGG	1 cut(s)	606
BstNSI	RCATGY	3 cut(s)	282, 579, 919
BstSCI	CCNGG	4 cut(s)	163, 604, 794, 857
BstSFI	CTRYAG	1 cut(s)	741
BstSLI	GKGCMC	1 cut(s)	1039
BstV2I	GAAGAC	1 cut(s)	258
BstX2I	RGATCY	1 cut(s)	559
BstYI	RGATCY	1 cut(s)	559
BsuRI	GGCC	3 cut(s)	5, 90, 163
BtgZI	GCGATG	1 cut(s)	285
BtsCI	GGATG	3 cut(s)	205, 427, 528
BtsIMutI	CAGTG	1 cut(s)	1037
Cac8I	GCNNGC	4 cut(s)	110, 153, 568, 917
CfoI	GCGC	1 cut(s)	114
Cfr13I	GGNCC	1 cut(s)	162
CseI	GACGC	1 cut(s)	263
Csp6I	GTAC	5 cut(s)	503, 635, 884, 992, 1113
CviAII	CATG	4 cut(s)	279, 576, 916, 1125
CviQI	GTAC	5 cut(s)	503, 635, 884, 992, 1113
DdeI	CTNAG	1 cut(s)	492
DpnI	GATC	4 cut(s)	219, 264, 390, 561
DpnII	GATC	4 cut(s)	217, 262, 388, 559
Eam1104I	CTCTTC	3 cut(s)	22, 463, 1101
EarI	CTCTTC	3 cut(s)	22, 463, 1101
Eco31I	GGTCTC	1 cut(s)	785
Eco57I	CTGAAG	4 cut(s)	270, 419, 740, 755
Eco88I	CYCGRG	1 cut(s)	734
EcoRII	CCWGG	1 cut(s)	604
EcoT22I	ATGCAT	1 cut(s)	835
Esp3I	CGTCTC	1 cut(s)	581
FaeI	CATG	4 cut(s)	282, 579, 919, 1128
FalI	AAGNNNNNCTT	2 cut(s)	836, 868
FatI	CATG	4 cut(s)	278, 575, 915, 1124
FauI	CCCGC	3 cut(s)	75, 113, 217
FblI	GTMKAC	2 cut(s)	621, 744
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	3 cut(s)	192, 434, 535
Fsp4HI	GCNGC	1 cut(s)	12
FspBI	CTAG	4 cut(s)	221, 546, 837, 1029
GlaI	GCGC	1 cut(s)	113
GluI	GCNGC	1 cut(s)	12
GsaI	CCCAGC	1 cut(s)	261
GsuI	CTGGAG	3 cut(s)	588, 735, 1032
HaeIII	GGCC	3 cut(s)	5, 90, 163
HapII	CCGG	4 cut(s)	165, 351, 796, 859
HgaI	GACGC	1 cut(s)	263
HhaI	GCGC	1 cut(s)	114
Hin1II	CATG	4 cut(s)	282, 579, 919, 1128
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HinfI	GANTC	5 cut(s)	79, 179, 428, 737, 766
HpaII	CCGG	4 cut(s)	165, 351, 796, 859
HphI	GGTGA	2 cut(s)	91, 911
Hpy166II	GTNNAC	6 cut(s)	611, 622, 745, 814, 1018, 1037
Hpy188I	TCNGA	3 cut(s)	210, 399, 774
Hpy188III	TCNNGA	5 cut(s)	837, 969, 983, 1061, 1075
Hpy8I	GTNNAC	6 cut(s)	611, 622, 745, 814, 1018, 1037
HpyAV	CCTTC	4 cut(s)	101, 210, 394, 1101
HpyCH4III	ACNGT	2 cut(s)	450, 991
HpyCH4IV	ACGT	1 cut(s)	613
HpyCH4V	TGCA	9 cut(s)	46, 57, 359, 365, 517, 566, 575, 833, 1037
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 152, 202, 254, 356, 563, 572
HpyF3I	CTNAG	1 cut(s)	492
HpySE526I	ACGT	1 cut(s)	613
Hsp92II	CATG	4 cut(s)	282, 579, 919, 1128
HspAI	GCGC	1 cut(s)	112
Kzo9I	GATC	4 cut(s)	217, 262, 388, 559
LguI	GCTCTTC	2 cut(s)	463, 1101
LmnI	GCTCC	1 cut(s)	607
LweI	GCATC	3 cut(s)	214, 842, 974
MaeI	CTAG	4 cut(s)	221, 546, 837, 1029
MaeII	ACGT	1 cut(s)	613
MaeIII	GTNAC	3 cut(s)	274, 411, 976
MalI	GATC	4 cut(s)	219, 264, 390, 561
MboI	GATC	4 cut(s)	217, 262, 388, 559
MboII	GAAGA	8 cut(s)	9, 12, 15, 263, 480, 746, 761, 1088
MfeI	CAATTG	1 cut(s)	801
MflI	RGATCY	1 cut(s)	559
MhlI	GDGCHC	2 cut(s)	475, 1039
MluCI	AATT	5 cut(s)	354, 508, 801, 934, 999
MlyI	GAGTC	2 cut(s)	422, 746
MmeI	TCCRAC	4 cut(s)	233, 804, 849, 1084
Mph1103I	ATGCAT	1 cut(s)	835
MseI	TTAA	3 cut(s)	542, 942, 1053
MspI	CCGG	4 cut(s)	165, 351, 796, 859
MspR9I	CCNGG	4 cut(s)	165, 606, 796, 859
MunI	CAATTG	1 cut(s)	801
Mva1269I	GAATGC	1 cut(s)	733
MvaI	CCWGG	1 cut(s)	606
MwoI	GCNNNNNNNGC	7 cut(s)	11, 152, 202, 254, 356, 563, 572
NciI	CCSGG	3 cut(s)	165, 796, 859
NdeII	GATC	4 cut(s)	217, 262, 388, 559
NlaIII	CATG	4 cut(s)	282, 579, 919, 1128
NmuCI	GTSAC	3 cut(s)	274, 411, 976
NsiI	ATGCAT	1 cut(s)	835
NspI	RCATGY	3 cut(s)	282, 579, 919
PaeI	GCATGC	1 cut(s)	919
PaeR7I	CTCGAG	1 cut(s)	734
PciI	ACATGT	1 cut(s)	278
PciSI	GCTCTTC	2 cut(s)	463, 1101
PctI	GAATGC	1 cut(s)	733
PfeI	GAWTC	3 cut(s)	79, 179, 766
PflMI	CCANNNNNTGG	2 cut(s)	325, 823
PkrI	GCNGC	1 cut(s)	13
PleI	GAGTC	2 cut(s)	422, 745
PpsI	GAGTC	2 cut(s)	422, 745
PscI	ACATGT	1 cut(s)	278
Psp6I	CCWGG	1 cut(s)	604
PspFI	CCCAGC	1 cut(s)	257
PspGI	CCWGG	1 cut(s)	604
PspPI	GGNCC	1 cut(s)	162
PspXI	VCTCGAGB	1 cut(s)	734
PsuI	RGATCY	1 cut(s)	559
RsaI	GTAC	5 cut(s)	504, 636, 885, 993, 1114
RsaNI	GTAC	5 cut(s)	503, 635, 884, 992, 1113
SapI	GCTCTTC	2 cut(s)	463, 1101
SaqAI	TTAA	3 cut(s)	542, 942, 1053
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	4 cut(s)	217, 262, 388, 559
Sau96I	GGNCC	1 cut(s)	162
ScaI	AGTACT	1 cut(s)	504
SchI	GAGTC	2 cut(s)	422, 746
ScrFI	CCNGG	4 cut(s)	165, 606, 796, 859
SduI	GDGCHC	2 cut(s)	475, 1039
SfaNI	GCATC	3 cut(s)	214, 842, 974
SfcI	CTRYAG	1 cut(s)	741
Sfr274I	CTCGAG	1 cut(s)	734
SlaI	CTCGAG	1 cut(s)	734
SmlI	CTYRAG	2 cut(s)	734, 1073
SmoI	CTYRAG	2 cut(s)	734, 1073
SphI	GCATGC	1 cut(s)	919
Sse9I	AATT	5 cut(s)	354, 508, 801, 934, 999
SsiI	CCGC	5 cut(s)	12, 68, 106, 224, 632
SspMI	CTAG	4 cut(s)	221, 546, 837, 1029
StyD4I	CCNGG	4 cut(s)	163, 604, 794, 857
TaaI	ACNGT	2 cut(s)	450, 991
TaiI	ACGT	1 cut(s)	616
TaqI	TCGA	2 cut(s)	265, 735
TasI	AATT	5 cut(s)	354, 508, 801, 934, 999
TatI	WGTACW	2 cut(s)	502, 991
TauI	GCSGC	1 cut(s)	14
TfiI	GAWTC	3 cut(s)	79, 179, 766
Tru1I	TTAA	3 cut(s)	542, 942, 1053
Tru9I	TTAA	3 cut(s)	542, 942, 1053
TscAI	CASTG	1 cut(s)	1044
TseFI	GTSAC	3 cut(s)	274, 411, 976
Tsp45I	GTSAC	3 cut(s)	274, 411, 976
TspDTI	ATGAA	1 cut(s)	396
TspGWI	ACGGA	1 cut(s)	961
TspRI	CASTG	1 cut(s)	1044
Van91I	CCANNNNNTGG	2 cut(s)	325, 823
VneI	GTGCAC	1 cut(s)	1035
XapI	RAATTY	2 cut(s)	508, 934
XbaI	TCTAGA	1 cut(s)	836
XceI	RCATGY	3 cut(s)	282, 579, 919
XhoI	CTCGAG	1 cut(s)	734
XmiI	GTMKAC	2 cut(s)	621, 744
XspI	CTAG	4 cut(s)	221, 546, 837, 1029
ZrmI	AGTACT	1 cut(s)	504
Zsp2I	ATGCAT	1 cut(s)	835

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.