Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006317.1

Orthogroup ID

OG0002675

Physical Location & Seq

Genomic Coordinates Reverse (-)

80738 .. 84571

Gene Structure 3834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006317.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

atgttgggaactctctttgttgggttggagttggaaactgctgatagtgacagtgaaaaggcctggactgaactggacttcttattggggttggagatggcctttgcttcttcttcgtctttatctttctctctgcaaaagtcgtgcaacgcttactcggcaactgggattctctacagccttcctttcaccgcccgcctgcgctctcctatcaggcggatcattagaatgtctgcagttcaagctgaaaagcccggtttgtcatttgaatccctaccgataaagcctccttcacatccgacttatgatttgttgggtgtcatcaagtcagcccttgctgaagacgctggggatcgaggcgacgtgacatgtctggctaccattccacatgatatggaagtagaagcccacttcttggcaaaggagaatggtatagttgccggagttgcacttgcagagatggtattttatgaagttgatcccactctaaaggttgagtggtcacaaaaggatggagactccgtacataaaggcttagagtttggaaaagtttatggaagagcacacagcattgttgtagctgagagggtagtactgaattttatgcagaggatgagtggagtagcaactttaactaaggcgatggcagatcttgcaagccctgcatgtatcttggagacgagaaaaactgctccaggtttacgtttggtagataagtgggcggtactcattggtggtgggaaaaatcacagaatggggttatttgatatggtaatgataaaagataatcatatatcaatagctggaggcatcacgaatgccctcaagtctgtagacctatatcttcagcaaaggaatcttcagatggaggttgaggtggagacccggacaattgacgaagtagacaaagtattggactatgcatctcaaacaaagacttccttgacccggataatgttggacaatatggttgtaccactatcaaatggtgatgttgacgtcagcatgcttgaacaagctgtgaatttgattaaagggagatttgagacagaggcatctggaaatgttactcttgaaacagtacgcaaaattggacaaacaggagtggactacatttctagtggtgcactgacacattctgttaaagctctagacatctccctcaagattgataccgagttggctcttcaagtcggaagacgtacaaaacgagcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004514 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009165 GO:0009435 GO:0009507 GO:0009536 GO:0009987 GO:0016054 GO:0016740 GO:0016757 GO:0016763 GO:0017144 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0019752 GO:0034213 GO:0034641 GO:0034654 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043649 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046483 GO:0046496 GO:0046700 GO:0046874 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072524 GO:0072525 GO:0072526 GO:0090407 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

QRPTase_C QRPTase_N

Protein Analysis

405

Amino Acids

44.15

Weight (kDa)

5.6

Isoelectric Point (pI)

29.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01350 AT2G01350 AT2G01350 AT2G01350
fragaria_vesca	FvH4_4g32330 FvH4_4g32330 FvH4_4g32330 FvH4_4g32330
malus_domestica	MD16G1029000.v1.1
prunus_persica	Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1
pyrus_communis	pycom16g02470
rosa_chinensis	RchiOBHm_Chr2g0157601 RchiOBHm_Chr4g0441121
rosa_laevigata	RLG00000006112
rosa_multiflora	Rmu_sc0000607.1_g000026 Rmu_sc0006317.1_g000018 Rmu_sc0017059.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382090
rosa_rugosa	Rorug03G0337500 Rorug04G0331400
rosa_samantha	Rh1AG340100 Rh2BG059800 Rh2BG243400 Rh2BG348100 Rh2DG286800 Rh3BG365900 Rh4AG382900 Rh4BG396800 Rh4CG411800 Rh4DG389700 Rh5BG215200 Rh5BG425100 Rh6BG216200 Rh6DG027200
rosa_wichuraiana	Rw4G033050 Rw6G003900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1002
AccB7I	CCANNNNNTGG	1 cut(s)	415
AccI	GTMKAC	2 cut(s)	834, 903
AciI	CCGC	4 cut(s)	192, 196, 217, 722
AclWI	GGATC	3 cut(s)	227, 360, 473
AcsI	RAATTY	2 cut(s)	598, 1024
AcuI	CTGAAG	3 cut(s)	360, 830, 845
AcyI	GRCGYC	1 cut(s)	999
AfaI	GTAC	6 cut(s)	525, 594, 726, 975, 1083, 1204
AfiI	CCNNNNNNNGG	2 cut(s)	415, 948
AflIII	ACRYGT	1 cut(s)	368
AgsI	TTSAA	5 cut(s)	242, 269, 1013, 1076, 1190
AjiI	CACGTC	1 cut(s)	364
AjnI	CCWGG	2 cut(s)	62, 694
AluBI	AGCT	5 cut(s)	245, 581, 803, 1019, 1148
AluI	AGCT	5 cut(s)	245, 581, 803, 1019, 1148
Alw21I	GWGCWC	2 cut(s)	565, 1129
Alw26I	GTCTC	4 cut(s)	510, 671, 875, 1040
Alw44I	GTGCAC	1 cut(s)	1125
AlwI	GGATC	3 cut(s)	227, 360, 473
AoxI	GGCC	2 cut(s)	60, 99
ApaLI	GTGCAC	1 cut(s)	1125
ApoI	RAATTY	2 cut(s)	598, 1024
ArsI	GACNNNNNNTTYG	2 cut(s)	292, 324
AspLEI	GCGC	1 cut(s)	204
AsuC2I	CCSGG	3 cut(s)	255, 886, 949
AsuHPI	GGTGA	2 cut(s)	181, 1001
BaeGI	GKGCMC	1 cut(s)	1129
BbsI	GAAGAC	2 cut(s)	348, 1204
Bbv12I	GWGCWC	2 cut(s)	565, 1129
BccI	CCATC	5 cut(s)	91, 454, 506, 637, 859
BciT130I	CCWGG	2 cut(s)	64, 696
BcnI	CCSGG	3 cut(s)	255, 886, 949
BcoDI	GTCTC	4 cut(s)	510, 671, 875, 1040
BfaI	CTAG	2 cut(s)	1119, 1151
BfmI	CTRYAG	3 cut(s)	175, 234, 831
BglII	AGATCT	1 cut(s)	649
BmcAI	AGTACT	1 cut(s)	594
Bme1390I	CCNGG	5 cut(s)	64, 255, 696, 886, 949
BmgBI	CACGTC	1 cut(s)	364
BmrFI	CCNGG	5 cut(s)	64, 255, 696, 886, 949
BmrI	ACTGGG	1 cut(s)	174
BmsI	GCATC	3 cut(s)	819, 932, 1064
BmuI	ACTGGG	1 cut(s)	174
BpiI	GAAGAC	2 cut(s)	348, 1204
BpmI	CTGGAG	2 cut(s)	678, 825
BpuEI	CTTGAG	2 cut(s)	809, 1148
BpuMI	CCSGG	3 cut(s)	255, 886, 949
BsaHI	GRCGYC	1 cut(s)	999
BsaI	GGTCTC	1 cut(s)	875
BsaXI	ACNNNNNCTCC	2 cut(s)	507, 537
Bsc4I	CCNNNNNNNGG	2 cut(s)	415, 948
Bse1I	ACTGG	2 cut(s)	78, 169
BseBI	CCWGG	2 cut(s)	64, 696
BseGI	GGATG	3 cut(s)	295, 517, 618
BseLI	CCNNNNNNNGG	2 cut(s)	415, 948
BseMII	CTCAG	1 cut(s)	573
BseNI	ACTGG	2 cut(s)	78, 169
BseSI	GKGCMC	1 cut(s)	1129
BseYI	CCCAGC	1 cut(s)	347
BshFI	GGCC	2 cut(s)	62, 101
BsiHKAI	GWGCWC	2 cut(s)	565, 1129
BsiSI	CCGG	4 cut(s)	255, 441, 886, 949
BslI	CCNNNNNNNGG	2 cut(s)	415, 948
BsmAI	GTCTC	4 cut(s)	510, 671, 875, 1040
BsmBI	CGTCTC	1 cut(s)	671
BsmI	GAATGC	1 cut(s)	823
BsnI	GGCC	2 cut(s)	62, 101
Bso31I	GGTCTC	1 cut(s)	875
Bsp1286I	GDGCHC	2 cut(s)	565, 1129
Bsp143I	GATC	4 cut(s)	219, 352, 478, 649
BspACI	CCGC	4 cut(s)	192, 196, 217, 722
BspANI	GGCC	2 cut(s)	62, 101
BspCNI	CTCAG	1 cut(s)	574
BspMAI	CTGCAG	1 cut(s)	238
BspPI	GGATC	3 cut(s)	227, 360, 473
BspQI	GCTCTTC	2 cut(s)	553, 1191
BspTNI	GGTCTC	1 cut(s)	875
BsrI	ACTGG	2 cut(s)	78, 169
BssMI	GATC	4 cut(s)	219, 352, 478, 649
BssNI	GRCGYC	1 cut(s)	999
Bst2UI	CCWGG	2 cut(s)	64, 696
Bst4CI	ACNGT	2 cut(s)	53, 1081
Bst6I	CTCTTC	2 cut(s)	553, 1191
BstACI	GRCGYC	1 cut(s)	999
BstAPI	GCANNNNNTGC	2 cut(s)	653, 662
BstC8I	GCNNGC	4 cut(s)	196, 200, 658, 1007
BstDEI	CTNAG	3 cut(s)	535, 582, 636
BstF5I	GGATG	3 cut(s)	295, 517, 618
BstHHI	GCGC	1 cut(s)	204
BstKTI	GATC	4 cut(s)	222, 355, 481, 652
BstMAI	GTCTC	4 cut(s)	510, 671, 875, 1040
BstMBI	GATC	4 cut(s)	219, 352, 478, 649
BstMWI	GCNNNNNNNGC	6 cut(s)	158, 242, 344, 446, 653, 662
BstNI	CCWGG	2 cut(s)	64, 696
BstNSI	RCATGY	3 cut(s)	372, 669, 1009
BstSCI	CCNGG	5 cut(s)	62, 253, 694, 884, 947
BstSFI	CTRYAG	3 cut(s)	175, 234, 831
BstSLI	GKGCMC	1 cut(s)	1129
BstV2I	GAAGAC	2 cut(s)	348, 1204
BstX2I	RGATCY	1 cut(s)	649
BstYI	RGATCY	1 cut(s)	649
BsuRI	GGCC	2 cut(s)	62, 101
BtgZI	GCGATG	1 cut(s)	656
BtrI	CACGTC	1 cut(s)	364
BtsCI	GGATG	3 cut(s)	295, 517, 618
BtsIMutI	CAGTG	2 cut(s)	58, 1127
Cac8I	GCNNGC	4 cut(s)	196, 200, 658, 1007
CfoI	GCGC	1 cut(s)	204
CseI	GACGC	1 cut(s)	353
Csp6I	GTAC	6 cut(s)	524, 593, 725, 974, 1082, 1203
CviAII	CATG	5 cut(s)	369, 389, 666, 1006, 1215
CviQI	GTAC	6 cut(s)	524, 593, 725, 974, 1082, 1203
DdeI	CTNAG	3 cut(s)	535, 582, 636
DpnI	GATC	4 cut(s)	221, 354, 480, 651
DpnII	GATC	4 cut(s)	219, 352, 478, 649
Eam1104I	CTCTTC	2 cut(s)	553, 1191
EarI	CTCTTC	2 cut(s)	553, 1191
EciI	GGCGGA	1 cut(s)	232
Eco147I	AGGCCT	1 cut(s)	62
Eco31I	GGTCTC	1 cut(s)	875
Eco57I	CTGAAG	3 cut(s)	360, 830, 845
EcoRII	CCWGG	2 cut(s)	62, 694
EcoT22I	ATGCAT	1 cut(s)	925
Esp3I	CGTCTC	1 cut(s)	671
FaeI	CATG	5 cut(s)	372, 392, 669, 1009, 1218
FalI	AAGNNNNNCTT	2 cut(s)	926, 958
FatI	CATG	5 cut(s)	368, 388, 665, 1005, 1214
FauI	CCCGC	1 cut(s)	203
FblI	GTMKAC	2 cut(s)	834, 903
FokI	GGATG	3 cut(s)	282, 524, 625
FspBI	CTAG	2 cut(s)	1119, 1151
GlaI	GCGC	1 cut(s)	203
GsaI	CCCAGC	1 cut(s)	351
GsuI	CTGGAG	2 cut(s)	678, 825
HaeIII	GGCC	2 cut(s)	62, 101
HapII	CCGG	4 cut(s)	255, 441, 886, 949
HgaI	GACGC	1 cut(s)	353
HhaI	GCGC	1 cut(s)	204
Hin1I	GRCGYC	1 cut(s)	999
Hin1II	CATG	5 cut(s)	372, 392, 669, 1009, 1218
Hin6I	GCGC	1 cut(s)	202
HinP1I	GCGC	1 cut(s)	202
HincII	GTYRAC	1 cut(s)	997
HindII	GTYRAC	1 cut(s)	997
HinfI	GANTC	4 cut(s)	169, 269, 518, 856
HpaII	CCGG	4 cut(s)	255, 441, 886, 949
HphI	GGTGA	2 cut(s)	181, 1001
Hpy166II	GTNNAC	6 cut(s)	701, 835, 904, 997, 1108, 1127
Hpy188I	TCNGA	3 cut(s)	300, 864, 1196
Hpy188III	TCNNGA	5 cut(s)	814, 1059, 1073, 1151, 1165
Hpy8I	GTNNAC	6 cut(s)	701, 835, 904, 997, 1108, 1127
Hpy99I	CGWCG	1 cut(s)	365
HpyAV	CCTTC	2 cut(s)	191, 300
HpyCH4III	ACNGT	2 cut(s)	53, 1081
HpyCH4IV	ACGT	4 cut(s)	363, 703, 999, 1201
HpyF10VI	GCNNNNNNNGC	6 cut(s)	158, 242, 344, 446, 653, 662
HpyF3I	CTNAG	3 cut(s)	535, 582, 636
HpySE526I	ACGT	4 cut(s)	363, 703, 999, 1201
Hsp92I	GRCGYC	1 cut(s)	999
Hsp92II	CATG	5 cut(s)	372, 392, 669, 1009, 1218
HspAI	GCGC	1 cut(s)	202
Kzo9I	GATC	4 cut(s)	219, 352, 478, 649
LguI	GCTCTTC	2 cut(s)	553, 1191
LmnI	GCTCC	1 cut(s)	697
LweI	GCATC	3 cut(s)	819, 932, 1064
MaeI	CTAG	2 cut(s)	1119, 1151
MaeII	ACGT	4 cut(s)	363, 703, 999, 1201
MaeIII	GTNAC	4 cut(s)	47, 364, 501, 1066
MalI	GATC	4 cut(s)	221, 354, 480, 651
MboI	GATC	4 cut(s)	219, 352, 478, 649
MboII	GAAGA	8 cut(s)	102, 105, 353, 570, 836, 851, 1178, 1209
MfeI	CAATTG	1 cut(s)	891
MflI	RGATCY	1 cut(s)	649
MhlI	GDGCHC	2 cut(s)	565, 1129
MluCI	AATT	4 cut(s)	598, 891, 1024, 1089
MlyI	GAGTC	1 cut(s)	512
MmeI	TCCRAC	6 cut(s)	6, 12, 72, 323, 939, 1174
Mph1103I	ATGCAT	1 cut(s)	925
MseI	TTAA	3 cut(s)	632, 1032, 1143
MslI	CAYNNNNRTG	1 cut(s)	227
MspI	CCGG	4 cut(s)	255, 441, 886, 949
MspR9I	CCNGG	5 cut(s)	64, 255, 696, 886, 949
MunI	CAATTG	1 cut(s)	891
Mva1269I	GAATGC	1 cut(s)	823
MvaI	CCWGG	2 cut(s)	64, 696
MwoI	GCNNNNNNNGC	6 cut(s)	158, 242, 344, 446, 653, 662
NciI	CCSGG	3 cut(s)	255, 886, 949
NdeII	GATC	4 cut(s)	219, 352, 478, 649
NlaIII	CATG	5 cut(s)	372, 392, 669, 1009, 1218
NmeAIII	GCCGAG	1 cut(s)	137
NmuCI	GTSAC	3 cut(s)	47, 364, 501
NsiI	ATGCAT	1 cut(s)	925
NspI	RCATGY	3 cut(s)	372, 669, 1009
PaeI	GCATGC	1 cut(s)	1009
PceI	AGGCCT	1 cut(s)	62
PciI	ACATGT	1 cut(s)	368
PciSI	GCTCTTC	2 cut(s)	553, 1191
PcsI	WCGNNNNNNNCGW	1 cut(s)	1207
PctI	GAATGC	1 cut(s)	823
PfeI	GAWTC	3 cut(s)	169, 269, 856
PflMI	CCANNNNNTGG	1 cut(s)	415
PleI	GAGTC	1 cut(s)	512
PpsI	GAGTC	1 cut(s)	512
PscI	ACATGT	1 cut(s)	368
Psp6I	CCWGG	2 cut(s)	62, 694
PspFI	CCCAGC	1 cut(s)	347
PspGI	CCWGG	2 cut(s)	62, 694
PstI	CTGCAG	1 cut(s)	238
PsuI	RGATCY	1 cut(s)	649
RsaI	GTAC	6 cut(s)	525, 594, 726, 975, 1083, 1204
RsaNI	GTAC	6 cut(s)	524, 593, 725, 974, 1082, 1203
RseI	CAYNNNNRTG	1 cut(s)	227
SapI	GCTCTTC	2 cut(s)	553, 1191
SaqAI	TTAA	3 cut(s)	632, 1032, 1143
Sau3AI	GATC	4 cut(s)	219, 352, 478, 649
ScaI	AGTACT	1 cut(s)	594
SchI	GAGTC	1 cut(s)	512
ScrFI	CCNGG	5 cut(s)	64, 255, 696, 886, 949
SduI	GDGCHC	2 cut(s)	565, 1129
SfaNI	GCATC	3 cut(s)	819, 932, 1064
SfcI	CTRYAG	3 cut(s)	175, 234, 831
SmiMI	CAYNNNNRTG	1 cut(s)	227
SmlI	CTYRAG	2 cut(s)	824, 1163
SmoI	CTYRAG	2 cut(s)	824, 1163
SphI	GCATGC	1 cut(s)	1009
Sse9I	AATT	4 cut(s)	598, 891, 1024, 1089
SseBI	AGGCCT	1 cut(s)	62
SsiI	CCGC	4 cut(s)	192, 196, 217, 722
SspMI	CTAG	2 cut(s)	1119, 1151
StuI	AGGCCT	1 cut(s)	62
StyD4I	CCNGG	5 cut(s)	62, 253, 694, 884, 947
TaaI	ACNGT	2 cut(s)	53, 1081
TaiI	ACGT	4 cut(s)	366, 706, 1002, 1204
TaqI	TCGA	1 cut(s)	355
TasI	AATT	4 cut(s)	598, 891, 1024, 1089
TatI	WGTACW	1 cut(s)	592
TfiI	GAWTC	3 cut(s)	169, 269, 856
Tru1I	TTAA	3 cut(s)	632, 1032, 1143
Tru9I	TTAA	3 cut(s)	632, 1032, 1143
TscAI	CASTG	2 cut(s)	58, 1134
TseFI	GTSAC	3 cut(s)	47, 364, 501
Tsp45I	GTSAC	3 cut(s)	47, 364, 501
TspDTI	ATGAA	1 cut(s)	486
TspGWI	ACGGA	1 cut(s)	511
TspRI	CASTG	2 cut(s)	58, 1134
Van91I	CCANNNNNTGG	1 cut(s)	415
VneI	GTGCAC	1 cut(s)	1125
XapI	RAATTY	2 cut(s)	598, 1024
XbaI	TCTAGA	1 cut(s)	1150
XceI	RCATGY	3 cut(s)	372, 669, 1009
XmiI	GTMKAC	2 cut(s)	834, 903
XspI	CTAG	2 cut(s)	1119, 1151
ZraI	GACGTC	1 cut(s)	1000
ZrmI	AGTACT	1 cut(s)	594
Zsp2I	ATGCAT	1 cut(s)	925

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.