Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002675

Physical Location & Seq

Genomic Coordinates Reverse (-)

68955941 .. 68960312

Gene Structure 4372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG382900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGCCTTTGCTTCTTCTTCTTCTTCGTCTTTATCTTTCCCTCTGCAAAAGTCGTGCAACGCTTACCCGGCAACTGGGATTCTCTACGGCCTTCCTTTCACCACCCGCCTGCGCTCTCCTATCAGGCAGATCATTAGAATGTCTGCAGTTCAAGCTGAAAAGCCCGGTTTGTCATTTGAATCCCTACCGATAAAGCCTCCTTCACATCCGACTTATGATTTGTTGGGTGTCATCAAGTCAGCCCTTGCTGAAGACGCTGGGGATCGAGGCGACGTGACATGTCTGGCTACCATTCCACATGATATGGAAGTAGAAGCCCACTTCTTGGCAAAGGAGAATGGTATAGTTGCCGGAGTTGCACTTGCAGAGATGGTATTTTATGAAGTTGATCCCACTCTAAAGGTTGAGTGGTCACAAAAGGATGGAGACTCCGTACATAAAGGCTTAGAGTTTGGAAAAGTTTATGGAAGAGCACACAGCATTGTTGTCGCTGAGAGGGTAGTACTGAATTTTATGCAGAGGATGAGTGGAGTAGCAACTTTAACTAAGGCGATGGCAGATCTTGCAAGCCCTTCATGTATCTTGGAGACAAGAAAAACTGCTCCAGGTTTACGTTTGGTAGATAAGTGGGCGGTACTCATTGGTGGTGGGAAAAATCACAGAATGGGGTTATTTGATATGGTAATGATAAAAGATAATCATATATCAATAGCTGGAGGCATCATGAATGCCCTCAAGTCTGTAGACCTATATCTTCAGCAAAGGAATCTTCAGATGGAGGTTGAGGTGGAGACCCGGACAATTGACGAAGTAGACAAAGTATTGGACTATGCATCTCAAACAAAGACTTCCTTGACCCGGATAATGTTGGACAATATGGTTGTACCACTATCAAATGGTGATGTTGACGTCAGCATGCTTGAACAAGCTGTGAATTTGATTAAAGGGAGATTTGAGACAGAGGCATCTGGAAATGTTACTCTTGAAACAGTACACAAAATTGGACAAACAGGAGTGGACTACATTTCTAGTGGTGCACTGACACATTCTGTTAAAGCTCTAGACATCTCCCTCAAGATTGATACCGAGTTGGCTCTTCAAGTCGGAAGGCGTACAAAACGAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004514 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009165 GO:0009435 GO:0009507 GO:0009536 GO:0009987 GO:0016054 GO:0016740 GO:0016757 GO:0016763 GO:0017144 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0019752 GO:0034213 GO:0034641 GO:0034654 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043649 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046483 GO:0046496 GO:0046700 GO:0046874 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072524 GO:0072525 GO:0072526 GO:0090407 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

QRPTase_C QRPTase_N

Protein Analysis

375

Amino Acids

40.82

Weight (kDa)

6.33

Isoelectric Point (pI)

31.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QRPTase_N	PF02749	91 - 176	4.6e-22	Quinolinate phosphoribosyl transferase, N-terminal domain
QRPTase_C	PF01729	178 - 359	5e-50	Quinolinate phosphoribosyl transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01350 AT2G01350 AT2G01350 AT2G01350
fragaria_vesca	FvH4_4g32330 FvH4_4g32330 FvH4_4g32330 FvH4_4g32330
malus_domestica	MD16G1029000.v1.1
prunus_persica	Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1
pyrus_communis	pycom16g02470
rosa_chinensis	RchiOBHm_Chr2g0157601 RchiOBHm_Chr4g0441121
rosa_laevigata	RLG00000006112
rosa_multiflora	Rmu_sc0000607.1_g000026 Rmu_sc0006317.1_g000018 Rmu_sc0017059.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382090
rosa_rugosa	Rorug03G0337500 Rorug04G0331400
rosa_samantha	Rh1AG340100 Rh2BG059800 Rh2BG243400 Rh2BG348100 Rh2DG286800 Rh3BG365900 Rh4AG382900 Rh4BG396800 Rh4CG411800 Rh4DG389700 Rh5BG215200 Rh5BG425100 Rh6BG216200 Rh6DG027200
rosa_wichuraiana	Rw4G033050 Rw6G003900

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	912
AccB7I	CCANNNNNTGG	1 cut(s)	325
AccI	GTMKAC	2 cut(s)	744, 813
AciI	CCGC	2 cut(s)	106, 632
AclWI	GGATC	2 cut(s)	270, 383
AcsI	RAATTY	2 cut(s)	508, 934
AcuI	CTGAAG	3 cut(s)	270, 740, 755
AcyI	GRCGYC	1 cut(s)	909
AfaI	GTAC	6 cut(s)	435, 504, 636, 885, 993, 1114
AfiI	CCNNNNNNNGG	3 cut(s)	74, 325, 858
AflIII	ACRYGT	1 cut(s)	278
AgsI	TTSAA	5 cut(s)	152, 179, 923, 986, 1100
AjiI	CACGTC	1 cut(s)	274
AjnI	CCWGG	1 cut(s)	604
AluBI	AGCT	4 cut(s)	155, 713, 929, 1058
AluI	AGCT	4 cut(s)	155, 713, 929, 1058
Alw21I	GWGCWC	2 cut(s)	475, 1039
Alw26I	GTCTC	4 cut(s)	420, 581, 785, 950
Alw44I	GTGCAC	1 cut(s)	1035
AlwI	GGATC	2 cut(s)	270, 383
AoxI	GGCC	2 cut(s)	3, 88
ApaLI	GTGCAC	1 cut(s)	1035
ApoI	RAATTY	2 cut(s)	508, 934
ArsI	GACNNNNNNTTYG	2 cut(s)	202, 234
AspLEI	GCGC	1 cut(s)	114
AsuC2I	CCSGG	4 cut(s)	68, 165, 796, 859
AsuHPI	GGTGA	2 cut(s)	91, 911
BaeGI	GKGCMC	1 cut(s)	1039
BbsI	GAAGAC	1 cut(s)	258
Bbv12I	GWGCWC	2 cut(s)	475, 1039
BccI	CCATC	4 cut(s)	364, 416, 547, 769
BceAI	ACGGC	1 cut(s)	103
BcgI	CGANNNNNNTGC	2 cut(s)	469, 503
BciT130I	CCWGG	1 cut(s)	606
BcnI	CCSGG	4 cut(s)	68, 165, 796, 859
BcoDI	GTCTC	4 cut(s)	420, 581, 785, 950
BfaI	CTAG	2 cut(s)	1029, 1061
BfmI	CTRYAG	2 cut(s)	144, 741
BglII	AGATCT	1 cut(s)	559
BmcAI	AGTACT	1 cut(s)	504
Bme1390I	CCNGG	5 cut(s)	68, 165, 606, 796, 859
BmgBI	CACGTC	1 cut(s)	274
BmrFI	CCNGG	5 cut(s)	68, 165, 606, 796, 859
BmrI	ACTGGG	1 cut(s)	84
BmsI	GCATC	3 cut(s)	729, 842, 974
BmuI	ACTGGG	1 cut(s)	84
BpiI	GAAGAC	1 cut(s)	258
BpmI	CTGGAG	2 cut(s)	588, 735
BpuEI	CTTGAG	2 cut(s)	719, 1058
BpuMI	CCSGG	4 cut(s)	68, 165, 796, 859
BsaHI	GRCGYC	1 cut(s)	909
BsaI	GGTCTC	1 cut(s)	785
BsaXI	ACNNNNNCTCC	2 cut(s)	417, 447
Bsc4I	CCNNNNNNNGG	3 cut(s)	74, 325, 858
Bse1I	ACTGG	1 cut(s)	79
BseBI	CCWGG	1 cut(s)	606
BseGI	GGATG	3 cut(s)	205, 427, 528
BseLI	CCNNNNNNNGG	3 cut(s)	74, 325, 858
BseMII	CTCAG	1 cut(s)	483
BseNI	ACTGG	1 cut(s)	79
BseSI	GKGCMC	1 cut(s)	1039
BseYI	CCCAGC	1 cut(s)	257
BshFI	GGCC	2 cut(s)	5, 90
BsiHKAI	GWGCWC	2 cut(s)	475, 1039
BsiSI	CCGG	5 cut(s)	68, 165, 351, 796, 859
BslI	CCNNNNNNNGG	3 cut(s)	74, 325, 858
BsmAI	GTCTC	4 cut(s)	420, 581, 785, 950
BsmI	GAATGC	1 cut(s)	733
BsnI	GGCC	2 cut(s)	5, 90
Bso31I	GGTCTC	1 cut(s)	785
Bsp1286I	GDGCHC	2 cut(s)	475, 1039
Bsp143I	GATC	4 cut(s)	129, 262, 388, 559
BspACI	CCGC	2 cut(s)	106, 632
BspANI	GGCC	2 cut(s)	5, 90
BspCNI	CTCAG	1 cut(s)	484
BspHI	TCATGA	1 cut(s)	723
BspMAI	CTGCAG	1 cut(s)	148
BspPI	GGATC	2 cut(s)	270, 383
BspQI	GCTCTTC	2 cut(s)	463, 1101
BspTNI	GGTCTC	1 cut(s)	785
BsrI	ACTGG	1 cut(s)	79
BssMI	GATC	4 cut(s)	129, 262, 388, 559
BssNI	GRCGYC	1 cut(s)	909
Bst2UI	CCWGG	1 cut(s)	606
Bst4CI	ACNGT	1 cut(s)	991
Bst6I	CTCTTC	2 cut(s)	463, 1101
BstACI	GRCGYC	1 cut(s)	909
BstAPI	GCANNNNNTGC	1 cut(s)	563
BstC8I	GCNNGC	3 cut(s)	110, 568, 917
BstDEI	CTNAG	3 cut(s)	445, 492, 546
BstF5I	GGATG	3 cut(s)	205, 427, 528
BstHHI	GCGC	1 cut(s)	114
BstKTI	GATC	4 cut(s)	132, 265, 391, 562
BstMAI	GTCTC	4 cut(s)	420, 581, 785, 950
BstMBI	GATC	4 cut(s)	129, 262, 388, 559
BstMWI	GCNNNNNNNGC	5 cut(s)	68, 152, 254, 356, 563
BstNI	CCWGG	1 cut(s)	606
BstNSI	RCATGY	2 cut(s)	282, 919
BstSCI	CCNGG	5 cut(s)	66, 163, 604, 794, 857
BstSFI	CTRYAG	2 cut(s)	144, 741
BstSLI	GKGCMC	1 cut(s)	1039
BstV2I	GAAGAC	1 cut(s)	258
BstX2I	RGATCY	1 cut(s)	559
BstYI	RGATCY	1 cut(s)	559
BsuRI	GGCC	2 cut(s)	5, 90
BtgZI	GCGATG	1 cut(s)	566
BtrI	CACGTC	1 cut(s)	274
BtsCI	GGATG	3 cut(s)	205, 427, 528
BtsIMutI	CAGTG	1 cut(s)	1037
Cac8I	GCNNGC	3 cut(s)	110, 568, 917
CciI	TCATGA	1 cut(s)	723
CfoI	GCGC	1 cut(s)	114
CseI	GACGC	1 cut(s)	263
Csp6I	GTAC	6 cut(s)	434, 503, 635, 884, 992, 1113
CviAII	CATG	6 cut(s)	279, 299, 576, 724, 916, 1125
CviQI	GTAC	6 cut(s)	434, 503, 635, 884, 992, 1113
DdeI	CTNAG	3 cut(s)	445, 492, 546
DpnI	GATC	4 cut(s)	131, 264, 390, 561
DpnII	GATC	4 cut(s)	129, 262, 388, 559
Eam1104I	CTCTTC	2 cut(s)	463, 1101
EarI	CTCTTC	2 cut(s)	463, 1101
Eco31I	GGTCTC	1 cut(s)	785
Eco57I	CTGAAG	3 cut(s)	270, 740, 755
EcoRII	CCWGG	1 cut(s)	604
EcoT22I	ATGCAT	1 cut(s)	835
FaeI	CATG	6 cut(s)	282, 302, 579, 727, 919, 1128
FalI	AAGNNNNNCTT	2 cut(s)	836, 868
FatI	CATG	6 cut(s)	278, 298, 575, 723, 915, 1124
FauI	CCCGC	1 cut(s)	113
FblI	GTMKAC	2 cut(s)	744, 813
FokI	GGATG	3 cut(s)	192, 434, 535
FspBI	CTAG	2 cut(s)	1029, 1061
GlaI	GCGC	1 cut(s)	113
GsaI	CCCAGC	1 cut(s)	261
GsuI	CTGGAG	2 cut(s)	588, 735
HaeIII	GGCC	2 cut(s)	5, 90
HapII	CCGG	5 cut(s)	68, 165, 351, 796, 859
HgaI	GACGC	1 cut(s)	263
HhaI	GCGC	1 cut(s)	114
Hin1I	GRCGYC	1 cut(s)	909
Hin1II	CATG	6 cut(s)	282, 302, 579, 727, 919, 1128
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HincII	GTYRAC	1 cut(s)	907
HindII	GTYRAC	1 cut(s)	907
HinfI	GANTC	4 cut(s)	79, 179, 428, 766
HpaII	CCGG	5 cut(s)	68, 165, 351, 796, 859
HphI	GGTGA	2 cut(s)	91, 911
Hpy166II	GTNNAC	7 cut(s)	611, 745, 814, 907, 994, 1018, 1037
Hpy188I	TCNGA	3 cut(s)	210, 774, 1106
Hpy188III	TCNNGA	5 cut(s)	724, 969, 983, 1061, 1075
Hpy8I	GTNNAC	7 cut(s)	611, 745, 814, 907, 994, 1018, 1037
Hpy99I	CGWCG	1 cut(s)	275
HpyAV	CCTTC	4 cut(s)	101, 210, 582, 1101
HpyCH4III	ACNGT	1 cut(s)	991
HpyCH4IV	ACGT	3 cut(s)	273, 613, 909
HpyCH4V	TGCA	9 cut(s)	46, 57, 146, 359, 365, 517, 566, 833, 1037
HpyF10VI	GCNNNNNNNGC	5 cut(s)	68, 152, 254, 356, 563
HpyF3I	CTNAG	3 cut(s)	445, 492, 546
HpySE526I	ACGT	3 cut(s)	273, 613, 909
Hsp92I	GRCGYC	1 cut(s)	909
Hsp92II	CATG	6 cut(s)	282, 302, 579, 727, 919, 1128
HspAI	GCGC	1 cut(s)	112
Kzo9I	GATC	4 cut(s)	129, 262, 388, 559
LguI	GCTCTTC	2 cut(s)	463, 1101
LmnI	GCTCC	1 cut(s)	607
LweI	GCATC	3 cut(s)	729, 842, 974
MaeI	CTAG	2 cut(s)	1029, 1061
MaeII	ACGT	3 cut(s)	273, 613, 909
MaeIII	GTNAC	3 cut(s)	274, 411, 976
MalI	GATC	4 cut(s)	131, 264, 390, 561
MboI	GATC	4 cut(s)	129, 262, 388, 559
MboII	GAAGA	9 cut(s)	6, 9, 12, 15, 263, 480, 746, 761, 1088
MfeI	CAATTG	1 cut(s)	801
MflI	RGATCY	1 cut(s)	559
MhlI	GDGCHC	2 cut(s)	475, 1039
MluCI	AATT	4 cut(s)	508, 801, 934, 999
MlyI	GAGTC	1 cut(s)	422
MmeI	TCCRAC	3 cut(s)	233, 849, 1084
Mph1103I	ATGCAT	1 cut(s)	835
MseI	TTAA	3 cut(s)	542, 942, 1053
MslI	CAYNNNNRTG	1 cut(s)	137
MspI	CCGG	5 cut(s)	68, 165, 351, 796, 859
MspR9I	CCNGG	5 cut(s)	68, 165, 606, 796, 859
MunI	CAATTG	1 cut(s)	801
Mva1269I	GAATGC	1 cut(s)	733
MvaI	CCWGG	1 cut(s)	606
MwoI	GCNNNNNNNGC	5 cut(s)	68, 152, 254, 356, 563
NciI	CCSGG	4 cut(s)	68, 165, 796, 859
NdeII	GATC	4 cut(s)	129, 262, 388, 559
NlaIII	CATG	6 cut(s)	282, 302, 579, 727, 919, 1128
NmuCI	GTSAC	2 cut(s)	274, 411
NsiI	ATGCAT	1 cut(s)	835
NspI	RCATGY	2 cut(s)	282, 919
PaeI	GCATGC	1 cut(s)	919
PagI	TCATGA	1 cut(s)	723
PciI	ACATGT	1 cut(s)	278
PciSI	GCTCTTC	2 cut(s)	463, 1101
PctI	GAATGC	1 cut(s)	733
PfeI	GAWTC	3 cut(s)	79, 179, 766
PflMI	CCANNNNNTGG	1 cut(s)	325
PleI	GAGTC	1 cut(s)	422
PpsI	GAGTC	1 cut(s)	422
PscI	ACATGT	1 cut(s)	278
Psp6I	CCWGG	1 cut(s)	604
PspFI	CCCAGC	1 cut(s)	257
PspGI	CCWGG	1 cut(s)	604
PstI	CTGCAG	1 cut(s)	148
PsuI	RGATCY	1 cut(s)	559
RsaI	GTAC	6 cut(s)	435, 504, 636, 885, 993, 1114
RsaNI	GTAC	6 cut(s)	434, 503, 635, 884, 992, 1113
RseI	CAYNNNNRTG	1 cut(s)	137
SapI	GCTCTTC	2 cut(s)	463, 1101
SaqAI	TTAA	3 cut(s)	542, 942, 1053
Sau3AI	GATC	4 cut(s)	129, 262, 388, 559
ScaI	AGTACT	1 cut(s)	504
SchI	GAGTC	1 cut(s)	422
ScrFI	CCNGG	5 cut(s)	68, 165, 606, 796, 859
SduI	GDGCHC	2 cut(s)	475, 1039
SfaNI	GCATC	3 cut(s)	729, 842, 974
SfcI	CTRYAG	2 cut(s)	144, 741
SmiMI	CAYNNNNRTG	1 cut(s)	137
SmlI	CTYRAG	2 cut(s)	734, 1073
SmoI	CTYRAG	2 cut(s)	734, 1073
SphI	GCATGC	1 cut(s)	919
Sse9I	AATT	4 cut(s)	508, 801, 934, 999
SsiI	CCGC	2 cut(s)	106, 632
SspMI	CTAG	2 cut(s)	1029, 1061
StyD4I	CCNGG	5 cut(s)	66, 163, 604, 794, 857
TaaI	ACNGT	1 cut(s)	991
TaiI	ACGT	3 cut(s)	276, 616, 912
TaqI	TCGA	1 cut(s)	265
TasI	AATT	4 cut(s)	508, 801, 934, 999
TatI	WGTACW	2 cut(s)	502, 991
TfiI	GAWTC	3 cut(s)	79, 179, 766
Tru1I	TTAA	3 cut(s)	542, 942, 1053
Tru9I	TTAA	3 cut(s)	542, 942, 1053
TscAI	CASTG	1 cut(s)	1044
TseFI	GTSAC	2 cut(s)	274, 411
Tsp45I	GTSAC	2 cut(s)	274, 411
TspDTI	ATGAA	3 cut(s)	396, 564, 740
TspGWI	ACGGA	1 cut(s)	421
TspRI	CASTG	1 cut(s)	1044
Van91I	CCANNNNNTGG	1 cut(s)	325
VneI	GTGCAC	1 cut(s)	1035
XapI	RAATTY	2 cut(s)	508, 934
XbaI	TCTAGA	1 cut(s)	1060
XceI	RCATGY	2 cut(s)	282, 919
XmiI	GTMKAC	2 cut(s)	744, 813
XspI	CTAG	2 cut(s)	1029, 1061
ZraI	GACGTC	1 cut(s)	910
ZrmI	AGTACT	1 cut(s)	504
Zsp2I	ATGCAT	1 cut(s)	835

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.