Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002675

Physical Location & Seq

Genomic Coordinates Reverse (-)

65717951 .. 65721996

Gene Structure 4046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG411800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGAGATGGCCTTTGCTTCTTCGTCTTTATCTTTCCCTCTGCAAAAGTCGTGCAACGCTTACCCGGCAACTGGGATTCTCTACGGCCTTCCTTTCACCACCCGCCTGCGCTCTCCTATCAGGCAGATCGTTAGAATGTCTGCAGTTCAAGCTGAAAAGCCCGGTTTGTCATTTGAATCCCTACCGATAAAGCCTCCTTCACATCCGACTTATGATTTGTTGGGTGTCATCAAGTCAGCCCTTGCTGAAGACGCTGGGGATCGAGGCGACGTGACATGTCTGGCTACCATTCCACATGATATGGAAGTAGAAGCCCACTTCTTGGCAAAGGAGAATGGTATAGTTGCCGGAGTTGCACTTGCAGAGATGGTATTTTATCAAGTTGATCCCACTCTAAAGGTTGAGTGGTCACAAAAGGATGGAGACTCCGTACATAAAGGCTTAGAGTTTGGAAAAGTTTATGGGAGAGCACACAGCATTGTTGTAGCTGAGAGGGTAGTACTGAATTTTATGCAGAGGATGAGTGGAGTGGCAACTTTAACTAAGGTGATGGCAGATCTTGCAAGCCCTGCATGTATCTTGGAGACGAGAAAAACTGCTCCAGGTTTACGTTTGGTAGATAAGTGGGCGGTACTCATTGGTGGTGGGAAAAATCACAGAATGGGGTTATTTGATATGGTAATGATAAAAGATAATCATATATCAATAGCTGGAGGCATCACGAATGCCCTCAAGTCTGTAGACCTATATCTTCAGCAAAGGAATCTTCAGATGGAGGTTGAGGTGGAGACCCGAACAATTGAAGAAGTAGACAAAGTATTGGACTATGCATCTCAAACAAAGACTTCCTTGACCCGGATAATGTTGGACAATATGGTTGTACCACTATCAAATGGTGATGTTGACGTCAGCATGCTTGAACAAGCTGTGAATTTGATTAAAGGGAGATTTGAGACAGAGGTAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004514 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009165 GO:0009435 GO:0009507 GO:0009536 GO:0009987 GO:0016054 GO:0016740 GO:0016757 GO:0016763 GO:0017144 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0019752 GO:0034213 GO:0034641 GO:0034654 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043649 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046483 GO:0046496 GO:0046700 GO:0046874 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072524 GO:0072525 GO:0072526 GO:0090407 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

QRPTase_C QRPTase_N

Protein Analysis

322

Amino Acids

35.27

Weight (kDa)

5.85

Isoelectric Point (pI)

32.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QRPTase_N	PF02749	90 - 175	3.5e-22	Quinolinate phosphoribosyl transferase, N-terminal domain
QRPTase_C	PF01729	177 - 316	2.3e-33	Quinolinate phosphoribosyl transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01350 AT2G01350 AT2G01350 AT2G01350
fragaria_vesca	FvH4_4g32330 FvH4_4g32330 FvH4_4g32330 FvH4_4g32330
malus_domestica	MD16G1029000.v1.1
prunus_persica	Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1
pyrus_communis	pycom16g02470
rosa_chinensis	RchiOBHm_Chr2g0157601 RchiOBHm_Chr4g0441121
rosa_laevigata	RLG00000006112
rosa_multiflora	Rmu_sc0000607.1_g000026 Rmu_sc0006317.1_g000018 Rmu_sc0017059.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382090
rosa_rugosa	Rorug03G0337500 Rorug04G0331400
rosa_samantha	Rh1AG340100 Rh2BG059800 Rh2BG243400 Rh2BG348100 Rh2DG286800 Rh3BG365900 Rh4AG382900 Rh4BG396800 Rh4CG411800 Rh4DG389700 Rh5BG215200 Rh5BG425100 Rh6BG216200 Rh6DG027200
rosa_wichuraiana	Rw4G033050 Rw6G003900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	909
AccB7I	CCANNNNNTGG	1 cut(s)	322
AccI	GTMKAC	2 cut(s)	741, 810
AciI	CCGC	2 cut(s)	103, 629
AclWI	GGATC	2 cut(s)	267, 380
AcsI	RAATTY	2 cut(s)	505, 931
AcuI	CTGAAG	3 cut(s)	267, 737, 752
AcyI	GRCGYC	1 cut(s)	906
AfaI	GTAC	4 cut(s)	432, 501, 633, 882
AfiI	CCNNNNNNNGG	3 cut(s)	71, 322, 855
AflIII	ACRYGT	1 cut(s)	275
AgsI	TTSAA	4 cut(s)	149, 176, 803, 920
AjiI	CACGTC	1 cut(s)	271
AjnI	CCWGG	1 cut(s)	601
AluBI	AGCT	4 cut(s)	152, 488, 710, 926
AluI	AGCT	4 cut(s)	152, 488, 710, 926
Alw21I	GWGCWC	1 cut(s)	472
Alw26I	GTCTC	4 cut(s)	417, 578, 782, 947
AlwI	GGATC	2 cut(s)	267, 380
AoxI	GGCC	2 cut(s)	9, 85
ApoI	RAATTY	2 cut(s)	505, 931
ArsI	GACNNNNNNTTYG	2 cut(s)	199, 231
AspLEI	GCGC	1 cut(s)	111
AsuC2I	CCSGG	3 cut(s)	65, 162, 856
AsuHPI	GGTGA	3 cut(s)	88, 559, 908
BbsI	GAAGAC	1 cut(s)	255
Bbv12I	GWGCWC	1 cut(s)	472
BccI	CCATC	4 cut(s)	361, 413, 544, 766
BceAI	ACGGC	1 cut(s)	100
BciT130I	CCWGG	1 cut(s)	603
BcnI	CCSGG	3 cut(s)	65, 162, 856
BcoDI	GTCTC	4 cut(s)	417, 578, 782, 947
BfaI	CTAG	1 cut(s)	967
BfmI	CTRYAG	2 cut(s)	141, 738
BglII	AGATCT	1 cut(s)	556
BmcAI	AGTACT	1 cut(s)	501
Bme1390I	CCNGG	4 cut(s)	65, 162, 603, 856
BmgBI	CACGTC	1 cut(s)	271
BmrFI	CCNGG	4 cut(s)	65, 162, 603, 856
BmrI	ACTGGG	1 cut(s)	81
BmsI	GCATC	2 cut(s)	726, 839
BmuI	ACTGGG	1 cut(s)	81
BpiI	GAAGAC	1 cut(s)	255
BpmI	CTGGAG	2 cut(s)	585, 732
BpuEI	CTTGAG	1 cut(s)	716
BpuMI	CCSGG	3 cut(s)	65, 162, 856
BsaHI	GRCGYC	1 cut(s)	906
BsaI	GGTCTC	1 cut(s)	782
BsaXI	ACNNNNNCTCC	2 cut(s)	414, 444
Bsc4I	CCNNNNNNNGG	3 cut(s)	71, 322, 855
Bse1I	ACTGG	1 cut(s)	76
BseBI	CCWGG	1 cut(s)	603
BseGI	GGATG	3 cut(s)	202, 424, 525
BseLI	CCNNNNNNNGG	3 cut(s)	71, 322, 855
BseMII	CTCAG	1 cut(s)	480
BseNI	ACTGG	1 cut(s)	76
BseYI	CCCAGC	1 cut(s)	254
BshFI	GGCC	2 cut(s)	11, 87
BsiHKAI	GWGCWC	1 cut(s)	472
BsiSI	CCGG	4 cut(s)	65, 162, 348, 856
BslI	CCNNNNNNNGG	3 cut(s)	71, 322, 855
BsmAI	GTCTC	4 cut(s)	417, 578, 782, 947
BsmBI	CGTCTC	1 cut(s)	578
BsmI	GAATGC	1 cut(s)	730
BsnI	GGCC	2 cut(s)	11, 87
Bso31I	GGTCTC	1 cut(s)	782
Bsp1286I	GDGCHC	1 cut(s)	472
Bsp143I	GATC	4 cut(s)	126, 259, 385, 556
BspACI	CCGC	2 cut(s)	103, 629
BspANI	GGCC	2 cut(s)	11, 87
BspCNI	CTCAG	1 cut(s)	481
BspMAI	CTGCAG	1 cut(s)	145
BspPI	GGATC	2 cut(s)	267, 380
BspTNI	GGTCTC	1 cut(s)	782
BsrI	ACTGG	1 cut(s)	76
BssMI	GATC	4 cut(s)	126, 259, 385, 556
BssNI	GRCGYC	1 cut(s)	906
Bst2UI	CCWGG	1 cut(s)	603
BstACI	GRCGYC	1 cut(s)	906
BstAPI	GCANNNNNTGC	2 cut(s)	560, 569
BstC8I	GCNNGC	3 cut(s)	107, 565, 914
BstDEI	CTNAG	3 cut(s)	442, 489, 543
BstF5I	GGATG	3 cut(s)	202, 424, 525
BstHHI	GCGC	1 cut(s)	111
BstKTI	GATC	4 cut(s)	129, 262, 388, 559
BstMAI	GTCTC	4 cut(s)	417, 578, 782, 947
BstMBI	GATC	4 cut(s)	126, 259, 385, 556
BstMWI	GCNNNNNNNGC	6 cut(s)	65, 149, 251, 353, 560, 569
BstNI	CCWGG	1 cut(s)	603
BstNSI	RCATGY	3 cut(s)	279, 576, 916
BstSCI	CCNGG	4 cut(s)	63, 160, 601, 854
BstSFI	CTRYAG	2 cut(s)	141, 738
BstV2I	GAAGAC	1 cut(s)	255
BstX2I	RGATCY	1 cut(s)	556
BstYI	RGATCY	1 cut(s)	556
BsuRI	GGCC	2 cut(s)	11, 87
BtrI	CACGTC	1 cut(s)	271
BtsCI	GGATG	3 cut(s)	202, 424, 525
Cac8I	GCNNGC	3 cut(s)	107, 565, 914
CfoI	GCGC	1 cut(s)	111
CseI	GACGC	1 cut(s)	260
Csp6I	GTAC	4 cut(s)	431, 500, 632, 881
CviAII	CATG	4 cut(s)	276, 296, 573, 913
CviQI	GTAC	4 cut(s)	431, 500, 632, 881
DdeI	CTNAG	3 cut(s)	442, 489, 543
DpnI	GATC	4 cut(s)	128, 261, 387, 558
DpnII	GATC	4 cut(s)	126, 259, 385, 556
Eco31I	GGTCTC	1 cut(s)	782
Eco57I	CTGAAG	3 cut(s)	267, 737, 752
EcoRII	CCWGG	1 cut(s)	601
EcoT22I	ATGCAT	1 cut(s)	832
Esp3I	CGTCTC	1 cut(s)	578
FaeI	CATG	4 cut(s)	279, 299, 576, 916
FalI	AAGNNNNNCTT	2 cut(s)	833, 865
FatI	CATG	4 cut(s)	275, 295, 572, 912
FauI	CCCGC	1 cut(s)	110
FblI	GTMKAC	2 cut(s)	741, 810
FokI	GGATG	3 cut(s)	189, 431, 532
FspBI	CTAG	1 cut(s)	967
GlaI	GCGC	1 cut(s)	110
GsaI	CCCAGC	1 cut(s)	258
GsuI	CTGGAG	2 cut(s)	585, 732
HaeIII	GGCC	2 cut(s)	11, 87
HapII	CCGG	4 cut(s)	65, 162, 348, 856
HgaI	GACGC	1 cut(s)	260
HhaI	GCGC	1 cut(s)	111
Hin1I	GRCGYC	1 cut(s)	906
Hin1II	CATG	4 cut(s)	279, 299, 576, 916
Hin6I	GCGC	1 cut(s)	109
HinP1I	GCGC	1 cut(s)	109
HincII	GTYRAC	1 cut(s)	904
HindII	GTYRAC	1 cut(s)	904
HinfI	GANTC	4 cut(s)	76, 176, 425, 763
HpaII	CCGG	4 cut(s)	65, 162, 348, 856
HphI	GGTGA	3 cut(s)	88, 559, 908
Hpy166II	GTNNAC	4 cut(s)	608, 742, 811, 904
Hpy188I	TCNGA	2 cut(s)	207, 771
Hpy188III	TCNNGA	1 cut(s)	721
Hpy8I	GTNNAC	4 cut(s)	608, 742, 811, 904
Hpy99I	CGWCG	1 cut(s)	272
HpyAV	CCTTC	2 cut(s)	98, 207
HpyCH4IV	ACGT	3 cut(s)	270, 610, 906
HpyCH4V	TGCA	9 cut(s)	43, 54, 143, 356, 362, 514, 563, 572, 830
HpyF10VI	GCNNNNNNNGC	6 cut(s)	65, 149, 251, 353, 560, 569
HpyF3I	CTNAG	3 cut(s)	442, 489, 543
HpySE526I	ACGT	3 cut(s)	270, 610, 906
Hsp92I	GRCGYC	1 cut(s)	906
Hsp92II	CATG	4 cut(s)	279, 299, 576, 916
HspAI	GCGC	1 cut(s)	109
Kzo9I	GATC	4 cut(s)	126, 259, 385, 556
LmnI	GCTCC	1 cut(s)	604
LweI	GCATC	2 cut(s)	726, 839
MaeI	CTAG	1 cut(s)	967
MaeII	ACGT	3 cut(s)	270, 610, 906
MaeIII	GTNAC	2 cut(s)	271, 408
MalI	GATC	4 cut(s)	128, 261, 387, 558
MboI	GATC	4 cut(s)	126, 259, 385, 556
MboII	GAAGA	5 cut(s)	12, 260, 743, 758, 815
MfeI	CAATTG	1 cut(s)	798
MflI	RGATCY	1 cut(s)	556
MhlI	GDGCHC	1 cut(s)	472
MluCI	AATT	3 cut(s)	505, 798, 931
MlyI	GAGTC	1 cut(s)	419
MmeI	TCCRAC	2 cut(s)	230, 846
Mph1103I	ATGCAT	1 cut(s)	832
MseI	TTAA	2 cut(s)	539, 939
MspI	CCGG	4 cut(s)	65, 162, 348, 856
MspR9I	CCNGG	4 cut(s)	65, 162, 603, 856
MunI	CAATTG	1 cut(s)	798
Mva1269I	GAATGC	1 cut(s)	730
MvaI	CCWGG	1 cut(s)	603
MwoI	GCNNNNNNNGC	6 cut(s)	65, 149, 251, 353, 560, 569
NciI	CCSGG	3 cut(s)	65, 162, 856
NdeII	GATC	4 cut(s)	126, 259, 385, 556
NlaIII	CATG	4 cut(s)	279, 299, 576, 916
NmuCI	GTSAC	2 cut(s)	271, 408
NsiI	ATGCAT	1 cut(s)	832
NspI	RCATGY	3 cut(s)	279, 576, 916
PaeI	GCATGC	1 cut(s)	916
PciI	ACATGT	1 cut(s)	275
PctI	GAATGC	1 cut(s)	730
PfeI	GAWTC	3 cut(s)	76, 176, 763
PflMI	CCANNNNNTGG	1 cut(s)	322
PleI	GAGTC	1 cut(s)	419
PpsI	GAGTC	1 cut(s)	419
PscI	ACATGT	1 cut(s)	275
Psp6I	CCWGG	1 cut(s)	601
PspFI	CCCAGC	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	601
PstI	CTGCAG	1 cut(s)	145
PsuI	RGATCY	1 cut(s)	556
RsaI	GTAC	4 cut(s)	432, 501, 633, 882
RsaNI	GTAC	4 cut(s)	431, 500, 632, 881
SaqAI	TTAA	2 cut(s)	539, 939
Sau3AI	GATC	4 cut(s)	126, 259, 385, 556
ScaI	AGTACT	1 cut(s)	501
SchI	GAGTC	1 cut(s)	419
ScrFI	CCNGG	4 cut(s)	65, 162, 603, 856
SduI	GDGCHC	1 cut(s)	472
SfaNI	GCATC	2 cut(s)	726, 839
SfcI	CTRYAG	2 cut(s)	141, 738
SmlI	CTYRAG	1 cut(s)	731
SmoI	CTYRAG	1 cut(s)	731
SphI	GCATGC	1 cut(s)	916
Sse9I	AATT	3 cut(s)	505, 798, 931
SsiI	CCGC	2 cut(s)	103, 629
SspMI	CTAG	1 cut(s)	967
StyD4I	CCNGG	4 cut(s)	63, 160, 601, 854
TaiI	ACGT	3 cut(s)	273, 613, 909
TaqI	TCGA	1 cut(s)	262
TasI	AATT	3 cut(s)	505, 798, 931
TatI	WGTACW	1 cut(s)	499
TfiI	GAWTC	3 cut(s)	76, 176, 763
Tru1I	TTAA	2 cut(s)	539, 939
Tru9I	TTAA	2 cut(s)	539, 939
TseFI	GTSAC	2 cut(s)	271, 408
Tsp45I	GTSAC	2 cut(s)	271, 408
TspGWI	ACGGA	1 cut(s)	418
Van91I	CCANNNNNTGG	1 cut(s)	322
XapI	RAATTY	2 cut(s)	505, 931
XceI	RCATGY	3 cut(s)	279, 576, 916
XmiI	GTMKAC	2 cut(s)	741, 810
XspI	CTAG	1 cut(s)	967
ZraI	GACGTC	1 cut(s)	907
ZrmI	AGTACT	1 cut(s)	501
Zsp2I	ATGCAT	1 cut(s)	832

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.