Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017059.1

Orthogroup ID

OG0002675

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 460

Gene Structure 460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017059.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

atgtctgcagttcaaactgagaagcccggtttatcctatgaatccctaccgataaagcctccttcacatccaacttactggcgtattagactgttgatttggaatgtgtggacttgtttggaccacttcttggcaaaggagaattgtatagttgctggaattgcacttgcagagatggtattttatgaagttgatcccactctaaaggttgagtggtcacaaaaggatggagactccgtacataaaggcttagagtctggaaaagttaatggtaactccggagtatta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004514 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009165 GO:0009435 GO:0009507 GO:0009536 GO:0009987 GO:0016054 GO:0016740 GO:0016757 GO:0016763 GO:0017144 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0019752 GO:0034213 GO:0034641 GO:0034654 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043649 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046483 GO:0046496 GO:0046700 GO:0046874 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072524 GO:0072525 GO:0072526 GO:0090407 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

QRPTase_C QRPTase_N

Protein Analysis

96

Amino Acids

10.74

Weight (kDa)

5.85

Isoelectric Point (pI)

19.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01350 AT2G01350 AT2G01350 AT2G01350
fragaria_vesca	FvH4_4g32330 FvH4_4g32330 FvH4_4g32330 FvH4_4g32330
malus_domestica	MD16G1029000.v1.1
prunus_persica	Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1
pyrus_communis	pycom16g02470
rosa_chinensis	RchiOBHm_Chr2g0157601 RchiOBHm_Chr4g0441121
rosa_laevigata	RLG00000006112
rosa_multiflora	Rmu_sc0000607.1_g000026 Rmu_sc0006317.1_g000018 Rmu_sc0017059.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382090
rosa_rugosa	Rorug03G0337500 Rorug04G0331400
rosa_samantha	Rh1AG340100 Rh2BG059800 Rh2BG243400 Rh2BG348100 Rh2DG286800 Rh3BG365900 Rh4AG382900 Rh4BG396800 Rh4CG411800 Rh4DG389700 Rh5BG215200 Rh5BG425100 Rh6BG216200 Rh6DG027200
rosa_wichuraiana	Rw4G033050 Rw6G003900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	130
AccIII	TCCGGA	1 cut(s)	278
AclWI	GGATC	1 cut(s)	188
AfaI	GTAC	1 cut(s)	240
AfiI	CCNNNNNNNGG	1 cut(s)	130
AgsI	TTSAA	1 cut(s)	14
Alw26I	GTCTC	1 cut(s)	225
AlwI	GGATC	1 cut(s)	188
Aor13HI	TCCGGA	1 cut(s)	278
ArsI	GACNNNNNNTTYG	2 cut(s)	81, 113
AspS9I	GGNCC	1 cut(s)	121
AsuC2I	CCSGG	1 cut(s)	27
AvaII	GGWCC	1 cut(s)	121
BccI	CCATC	2 cut(s)	169, 221
BcnI	CCSGG	1 cut(s)	27
BcoDI	GTCTC	1 cut(s)	225
BfmI	CTRYAG	1 cut(s)	6
Bme1390I	CCNGG	1 cut(s)	27
Bme18I	GGWCC	1 cut(s)	121
BmgT120I	GGNCC	1 cut(s)	121
BmrFI	CCNGG	1 cut(s)	27
BpuMI	CCSGG	1 cut(s)	27
BsaWI	WCCGGW	1 cut(s)	278
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bsc4I	CCNNNNNNNGG	1 cut(s)	130
Bse1I	ACTGG	1 cut(s)	83
BseAI	TCCGGA	1 cut(s)	278
BseGI	GGATG	2 cut(s)	67, 232
BseLI	CCNNNNNNNGG	1 cut(s)	130
BseMII	CTCAG	1 cut(s)	9
BseNI	ACTGG	1 cut(s)	83
BsiSI	CCGG	2 cut(s)	27, 279
BslI	CCNNNNNNNGG	1 cut(s)	130
BsmAI	GTCTC	1 cut(s)	225
Bsp13I	TCCGGA	1 cut(s)	278
Bsp143I	GATC	1 cut(s)	193
BspCNI	CTCAG	1 cut(s)	10
BspEI	TCCGGA	1 cut(s)	278
BspMAI	CTGCAG	1 cut(s)	10
BspPI	GGATC	1 cut(s)	188
BsrI	ACTGG	1 cut(s)	83
BssMI	GATC	1 cut(s)	193
Bst4CI	ACNGT	1 cut(s)	93
BstDEI	CTNAG	2 cut(s)	18, 250
BstF5I	GGATG	2 cut(s)	67, 232
BstKTI	GATC	1 cut(s)	196
BstMAI	GTCTC	1 cut(s)	225
BstMBI	GATC	1 cut(s)	193
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstSCI	CCNGG	1 cut(s)	25
BstSFI	CTRYAG	1 cut(s)	6
BstXI	CCANNNNNNTGG	1 cut(s)	78
BtsCI	GGATG	2 cut(s)	67, 232
Cfr13I	GGNCC	1 cut(s)	121
Csp6I	GTAC	1 cut(s)	239
CviJI	RGCY	3 cut(s)	25, 58, 249
CviKI_1	RGCY	3 cut(s)	25, 58, 249
CviQI	GTAC	1 cut(s)	239
DdeI	CTNAG	2 cut(s)	18, 250
DpnI	GATC	1 cut(s)	195
DpnII	GATC	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	121
FaiI	YATR	4 cut(s)	39, 149, 186, 243
FokI	GGATG	2 cut(s)	54, 239
HapII	CCGG	2 cut(s)	27, 279
HinfI	GANTC	3 cut(s)	41, 233, 254
HpaII	CCGG	2 cut(s)	27, 279
Hpy166II	GTNNAC	1 cut(s)	111
Hpy188III	TCNNGA	2 cut(s)	258, 279
Hpy8I	GTNNAC	1 cut(s)	111
HpyAV	CCTTC	1 cut(s)	72
HpyCH4III	ACNGT	1 cut(s)	93
HpyCH4V	TGCA	3 cut(s)	8, 164, 170
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpyF3I	CTNAG	2 cut(s)	18, 250
Kpn2I	TCCGGA	1 cut(s)	278
Kzo9I	GATC	1 cut(s)	193
LpnPI	CCDG	4 cut(s)	40, 64, 141, 243
MaeIII	GTNAC	2 cut(s)	216, 272
MalI	GATC	1 cut(s)	195
MboI	GATC	1 cut(s)	193
MluCI	AATT	2 cut(s)	142, 159
MlyI	GAGTC	2 cut(s)	227, 263
MmeI	TCCRAC	1 cut(s)	95
MnlI	CCTC	1 cut(s)	69
MroI	TCCGGA	1 cut(s)	278
MseI	TTAA	1 cut(s)	267
MspI	CCGG	2 cut(s)	27, 279
MspR9I	CCNGG	1 cut(s)	27
MwoI	GCNNNNNNNGC	1 cut(s)	161
NciI	CCSGG	1 cut(s)	27
NdeII	GATC	1 cut(s)	193
NmuCI	GTSAC	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	41
PflMI	CCANNNNNTGG	1 cut(s)	130
PleI	GAGTC	2 cut(s)	227, 262
PpsI	GAGTC	2 cut(s)	227, 262
PspPI	GGNCC	1 cut(s)	121
PstI	CTGCAG	1 cut(s)	10
RsaI	GTAC	1 cut(s)	240
RsaNI	GTAC	1 cut(s)	239
SaqAI	TTAA	1 cut(s)	267
Sau3AI	GATC	1 cut(s)	193
Sau96I	GGNCC	1 cut(s)	121
SchI	GAGTC	2 cut(s)	227, 263
ScrFI	CCNGG	1 cut(s)	27
SetI	ASST	1 cut(s)	210
SfcI	CTRYAG	1 cut(s)	6
SgeI	CNNG	8 cut(s)	38, 39, 91, 126, 142, 168, 179, 270
SinI	GGWCC	1 cut(s)	121
Sse9I	AATT	2 cut(s)	142, 159
StyD4I	CCNGG	1 cut(s)	25
TaaI	ACNGT	1 cut(s)	93
TasI	AATT	2 cut(s)	142, 159
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TseFI	GTSAC	1 cut(s)	216
Tsp45I	GTSAC	1 cut(s)	216
TspDTI	ATGAA	2 cut(s)	54, 201
TspGWI	ACGGA	1 cut(s)	226
Van91I	CCANNNNNTGG	1 cut(s)	130
VpaK11BI	GGWCC	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.