Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000607.1

Orthogroup ID

OG0002675

Physical Location & Seq

Genomic Coordinates Reverse (-)

129164 .. 129478

Gene Structure 315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000607.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

atggaagtagaagcccacttcttggcaaaggagaattgtatagttgctggaattgcacttgcagagatggtattttataaagttgatcccactctaaaggttgagtggtcacaaaaggatggagactccgtacataaaggcttagagtctggaaaagtttatggtaactccggagtatcagtaatctttcttgtcctagttgtttatggggattttgctatagacagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004514 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009165 GO:0009435 GO:0009507 GO:0009536 GO:0009987 GO:0016054 GO:0016740 GO:0016757 GO:0016763 GO:0017144 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0019752 GO:0034213 GO:0034641 GO:0034654 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043649 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046483 GO:0046496 GO:0046700 GO:0046874 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072524 GO:0072525 GO:0072526 GO:0090407 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

QRPTase_C QRPTase_N

Protein Analysis

76

Amino Acids

8.27

Weight (kDa)

4.71

Isoelectric Point (pI)

5.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01350 AT2G01350 AT2G01350 AT2G01350
fragaria_vesca	FvH4_4g32330 FvH4_4g32330 FvH4_4g32330 FvH4_4g32330
malus_domestica	MD16G1029000.v1.1
prunus_persica	Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1
pyrus_communis	pycom16g02470
rosa_chinensis	RchiOBHm_Chr2g0157601 RchiOBHm_Chr4g0441121
rosa_laevigata	RLG00000006112
rosa_multiflora	Rmu_sc0000607.1_g000026 Rmu_sc0006317.1_g000018 Rmu_sc0017059.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382090
rosa_rugosa	Rorug03G0337500 Rorug04G0331400
rosa_samantha	Rh1AG340100 Rh2BG059800 Rh2BG243400 Rh2BG348100 Rh2DG286800 Rh3BG365900 Rh4AG382900 Rh4BG396800 Rh4CG411800 Rh4DG389700 Rh5BG215200 Rh5BG425100 Rh6BG216200 Rh6DG027200
rosa_wichuraiana	Rw4G033050 Rw6G003900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	78
AccB7I	CCANNNNNTGG	1 cut(s)	22
AccIII	TCCGGA	1 cut(s)	170
AclWI	GGATC	1 cut(s)	80
AfaI	GTAC	1 cut(s)	132
AfiI	CCNNNNNNNGG	1 cut(s)	22
AluBI	AGCT	1 cut(s)	228
AluI	AGCT	1 cut(s)	228
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	1 cut(s)	80
Aor13HI	TCCGGA	1 cut(s)	170
BccI	CCATC	2 cut(s)	61, 113
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	2 cut(s)	197, 229
BfmI	CTRYAG	1 cut(s)	219
BsaWI	WCCGGW	1 cut(s)	170
BsaXI	ACNNNNNCTCC	4 cut(s)	114, 144, 165, 195
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
BseAI	TCCGGA	1 cut(s)	170
BseGI	GGATG	1 cut(s)	124
BseLI	CCNNNNNNNGG	1 cut(s)	22
BsiSI	CCGG	1 cut(s)	171
BslI	CCNNNNNNNGG	1 cut(s)	22
BsmAI	GTCTC	1 cut(s)	117
Bsp13I	TCCGGA	1 cut(s)	170
Bsp143I	GATC	1 cut(s)	85
BspEI	TCCGGA	1 cut(s)	170
BspPI	GGATC	1 cut(s)	80
BssMI	GATC	1 cut(s)	85
BstDEI	CTNAG	1 cut(s)	142
BstF5I	GGATG	1 cut(s)	124
BstKTI	GATC	1 cut(s)	88
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	1 cut(s)	85
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstSFI	CTRYAG	1 cut(s)	219
BtsCI	GGATG	1 cut(s)	124
Csp6I	GTAC	1 cut(s)	131
CviJI	RGCY	3 cut(s)	14, 141, 228
CviKI_1	RGCY	3 cut(s)	14, 141, 228
CviQI	GTAC	1 cut(s)	131
DdeI	CTNAG	1 cut(s)	142
DpnI	GATC	1 cut(s)	87
DpnII	GATC	1 cut(s)	85
FaiI	YATR	6 cut(s)	41, 78, 135, 162, 207, 221
FokI	GGATG	1 cut(s)	131
FspBI	CTAG	2 cut(s)	197, 229
HapII	CCGG	1 cut(s)	171
HinfI	GANTC	2 cut(s)	125, 146
HpaII	CCGG	1 cut(s)	171
Hpy188III	TCNNGA	2 cut(s)	150, 171
HpyCH4V	TGCA	2 cut(s)	56, 62
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	1 cut(s)	142
Kpn2I	TCCGGA	1 cut(s)	170
Kzo9I	GATC	1 cut(s)	85
LpnPI	CCDG	3 cut(s)	33, 135, 184
MaeI	CTAG	2 cut(s)	197, 229
MaeIII	GTNAC	2 cut(s)	108, 164
MalI	GATC	1 cut(s)	87
MboI	GATC	1 cut(s)	85
MluCI	AATT	2 cut(s)	34, 51
MlyI	GAGTC	2 cut(s)	119, 155
MroI	TCCGGA	1 cut(s)	170
MspI	CCGG	1 cut(s)	171
MwoI	GCNNNNNNNGC	1 cut(s)	53
NdeII	GATC	1 cut(s)	85
NmuCI	GTSAC	1 cut(s)	108
PflMI	CCANNNNNTGG	1 cut(s)	22
PleI	GAGTC	2 cut(s)	119, 154
PpsI	GAGTC	2 cut(s)	119, 154
PsiI	TTATAA	1 cut(s)	78
RsaI	GTAC	1 cut(s)	132
RsaNI	GTAC	1 cut(s)	131
Sau3AI	GATC	1 cut(s)	85
SchI	GAGTC	2 cut(s)	119, 155
SetI	ASST	2 cut(s)	102, 230
SfcI	CTRYAG	1 cut(s)	219
SgeI	CNNG	7 cut(s)	34, 60, 71, 162, 183, 203, 209
Sse9I	AATT	2 cut(s)	34, 51
SspMI	CTAG	2 cut(s)	197, 229
TasI	AATT	2 cut(s)	34, 51
TseFI	GTSAC	1 cut(s)	108
Tsp45I	GTSAC	1 cut(s)	108
TspGWI	ACGGA	1 cut(s)	118
Van91I	CCANNNNNTGG	1 cut(s)	22
XspI	CTAG	2 cut(s)	197, 229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.