Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0002675

Physical Location & Seq

Genomic Coordinates Reverse (-)

60169102 .. 60173282

Gene Structure 4181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G033050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGTGGGAAGTTGGGAACTCTCTTTGTTTGGGTTGGAGTTGGAAACTGCTGATAGTGACAGTGAAAAGGCCTGGACTGAACTGGACTTCTTATTTGGGTTTGGAGATGGCCTTTGCTTCTTCTTCGTCTTTATCTTTCTCTCTGCAAAAGTCGTGCAACGCTTACCCGGCAACTGGGATTCTCTACAGCCTTCCTTTCACCACCCGCCTGCGCTCTCCTGTCAGGCAGATCATTAGAATGTCTGCAGTTCAAGCTGAAAAGCCCGGTTTGTCATTTGAATCCCTACCGATAAAGCCTCCTTCACATCCGACTTATGATTTGTTGGGTGTCATCAAGTCAGCCCTTGCTGAAGACGCTGGGGATCGAGGCGACGTGACATGTCTGGCTACCATTCCACATGATATGGAAGTAGAAGCCCACTTCTTGGCAAAGGAGAATGGTATAGTTGCCGGAGTTGCACTTGCAGAGATGGTATTTTATGAAGTTGATCCCACTCTAAAGGTTGAGTGGTCACAAAAGGATGGAGACTCCGTACATAAAGGCTTAGAGTTTGGAAAAGTTTATGGAAGAGCACACAGCATTGTTGTAGCTGAGAGGGTAGTATTGAATTTTATGCAGAGGATGAGTGGAGTAGCAACTTTAACTAAGGCGATGGCAGATCTTGCAAGCCCTGCATGTATCTTGGAGACGAGAAAAACTGCTCCAGGTTTACGTTTGGTAGATAAGTGGGCGGTACTCATTGGTGGTGGGAAAAATCACAGAATGGGGTTATTTGATATGGTAATGATAAAAGATAATCATATATCAATAGCTGGAGGCATCACGAATGCCCTCAAGTCTGTAGACCTATATCTTCAGCAAAGGAATCTTCAGATGGAGGTTGAGGTGGAGACCCGGACAATTGACGAAGTAGACAAAGTATTGGACTATGCATCTCAAACAAAGACTTCCTTGACCCGGATAATGTTGGACAATATGGTTGTACCACTATCAAATGGTGATGTTGATGTCAGCATGCTTGAACAAGCTGTGAATTTGATTAAAGGGAGATTTGAGACAGAGGCATCTGGAAATGTTACTCTTGAAACAGTACACAAAATTGGACAAACAGGAGTGGACTACATTTCTAGTGGTGCACTGACACATTCTGTTAAAGCTCTAGACATCTCCCTCAAGATTGATACCGAGTTGGCTCTTCAAGTCGGAAGACGTACAAAACGAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004514 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009165 GO:0009435 GO:0009507 GO:0009536 GO:0009987 GO:0016054 GO:0016740 GO:0016757 GO:0016763 GO:0017144 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0019752 GO:0034213 GO:0034641 GO:0034654 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043649 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046483 GO:0046496 GO:0046700 GO:0046874 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072524 GO:0072525 GO:0072526 GO:0090407 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

QRPTase_C QRPTase_N

Protein Analysis

408

Amino Acids

44.64

Weight (kDa)

6.52

Isoelectric Point (pI)

29.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QRPTase_N	PF02749	124 - 209	5.3e-22	Quinolinate phosphoribosyl transferase, N-terminal domain
QRPTase_C	PF01729	211 - 392	1.6e-50	Quinolinate phosphoribosyl transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01350 AT2G01350 AT2G01350 AT2G01350
fragaria_vesca	FvH4_4g32330 FvH4_4g32330 FvH4_4g32330 FvH4_4g32330
malus_domestica	MD16G1029000.v1.1
prunus_persica	Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1
pyrus_communis	pycom16g02470
rosa_chinensis	RchiOBHm_Chr2g0157601 RchiOBHm_Chr4g0441121
rosa_laevigata	RLG00000006112
rosa_multiflora	Rmu_sc0000607.1_g000026 Rmu_sc0006317.1_g000018 Rmu_sc0017059.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382090
rosa_rugosa	Rorug03G0337500 Rorug04G0331400
rosa_samantha	Rh1AG340100 Rh2BG059800 Rh2BG243400 Rh2BG348100 Rh2DG286800 Rh3BG365900 Rh4AG382900 Rh4BG396800 Rh4CG411800 Rh4DG389700 Rh5BG215200 Rh5BG425100 Rh6BG216200 Rh6DG027200
rosa_wichuraiana	Rw4G033050 Rw6G003900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	424
AccI	GTMKAC	2 cut(s)	843, 912
AciI	CCGC	2 cut(s)	205, 731
AclWI	GGATC	2 cut(s)	369, 482
AcsI	RAATTY	2 cut(s)	607, 1033
AcuI	CTGAAG	3 cut(s)	369, 839, 854
AfaI	GTAC	5 cut(s)	534, 735, 984, 1092, 1213
AfiI	CCNNNNNNNGG	3 cut(s)	173, 424, 957
AflIII	ACRYGT	1 cut(s)	377
AgsI	TTSAA	6 cut(s)	251, 278, 607, 1022, 1085, 1199
AjiI	CACGTC	1 cut(s)	373
AjnI	CCWGG	2 cut(s)	70, 703
AluBI	AGCT	5 cut(s)	254, 590, 812, 1028, 1157
AluI	AGCT	5 cut(s)	254, 590, 812, 1028, 1157
Alw21I	GWGCWC	2 cut(s)	574, 1138
Alw26I	GTCTC	4 cut(s)	519, 680, 884, 1049
Alw44I	GTGCAC	1 cut(s)	1134
AlwI	GGATC	2 cut(s)	369, 482
AoxI	GGCC	2 cut(s)	68, 108
ApaLI	GTGCAC	1 cut(s)	1134
ApoI	RAATTY	2 cut(s)	607, 1033
ArsI	GACNNNNNNTTYG	4 cut(s)	76, 108, 301, 333
AspLEI	GCGC	1 cut(s)	213
AsuC2I	CCSGG	4 cut(s)	167, 264, 895, 958
AsuHPI	GGTGA	2 cut(s)	190, 1010
BaeGI	GKGCMC	1 cut(s)	1138
BbsI	GAAGAC	2 cut(s)	357, 1213
Bbv12I	GWGCWC	2 cut(s)	574, 1138
BccI	CCATC	5 cut(s)	100, 463, 515, 646, 868
BciT130I	CCWGG	2 cut(s)	72, 705
BcnI	CCSGG	4 cut(s)	167, 264, 895, 958
BcoDI	GTCTC	4 cut(s)	519, 680, 884, 1049
BfaI	CTAG	2 cut(s)	1128, 1160
BfmI	CTRYAG	3 cut(s)	184, 243, 840
BglII	AGATCT	1 cut(s)	658
Bme1390I	CCNGG	6 cut(s)	72, 167, 264, 705, 895, 958
BmgBI	CACGTC	1 cut(s)	373
BmrFI	CCNGG	6 cut(s)	72, 167, 264, 705, 895, 958
BmrI	ACTGGG	1 cut(s)	183
BmsI	GCATC	3 cut(s)	828, 941, 1073
BmuI	ACTGGG	1 cut(s)	183
BpiI	GAAGAC	2 cut(s)	357, 1213
BpmI	CTGGAG	2 cut(s)	687, 834
BpuEI	CTTGAG	2 cut(s)	818, 1157
BpuMI	CCSGG	4 cut(s)	167, 264, 895, 958
BsaI	GGTCTC	1 cut(s)	884
BsaXI	ACNNNNNCTCC	2 cut(s)	516, 546
Bsc4I	CCNNNNNNNGG	3 cut(s)	173, 424, 957
Bse1I	ACTGG	2 cut(s)	86, 178
BseBI	CCWGG	2 cut(s)	72, 705
BseGI	GGATG	3 cut(s)	304, 526, 627
BseLI	CCNNNNNNNGG	3 cut(s)	173, 424, 957
BseMII	CTCAG	1 cut(s)	582
BseNI	ACTGG	2 cut(s)	86, 178
BseSI	GKGCMC	1 cut(s)	1138
BseYI	CCCAGC	1 cut(s)	356
BshFI	GGCC	2 cut(s)	70, 110
BsiHKAI	GWGCWC	2 cut(s)	574, 1138
BsiSI	CCGG	5 cut(s)	167, 264, 450, 895, 958
BslI	CCNNNNNNNGG	3 cut(s)	173, 424, 957
BsmAI	GTCTC	4 cut(s)	519, 680, 884, 1049
BsmBI	CGTCTC	1 cut(s)	680
BsmI	GAATGC	1 cut(s)	832
BsnI	GGCC	2 cut(s)	70, 110
Bso31I	GGTCTC	1 cut(s)	884
Bsp1286I	GDGCHC	2 cut(s)	574, 1138
Bsp143I	GATC	4 cut(s)	228, 361, 487, 658
BspACI	CCGC	2 cut(s)	205, 731
BspANI	GGCC	2 cut(s)	70, 110
BspCNI	CTCAG	1 cut(s)	583
BspMAI	CTGCAG	1 cut(s)	247
BspPI	GGATC	2 cut(s)	369, 482
BspQI	GCTCTTC	2 cut(s)	562, 1200
BspTNI	GGTCTC	1 cut(s)	884
BsrI	ACTGG	2 cut(s)	86, 178
BssMI	GATC	4 cut(s)	228, 361, 487, 658
Bst2UI	CCWGG	2 cut(s)	72, 705
Bst4CI	ACNGT	2 cut(s)	61, 1090
Bst6I	CTCTTC	2 cut(s)	562, 1200
BstAPI	GCANNNNNTGC	2 cut(s)	662, 671
BstC8I	GCNNGC	3 cut(s)	209, 667, 1016
BstDEI	CTNAG	3 cut(s)	544, 591, 645
BstF5I	GGATG	3 cut(s)	304, 526, 627
BstHHI	GCGC	1 cut(s)	213
BstKTI	GATC	4 cut(s)	231, 364, 490, 661
BstMAI	GTCTC	4 cut(s)	519, 680, 884, 1049
BstMBI	GATC	4 cut(s)	228, 361, 487, 658
BstMWI	GCNNNNNNNGC	6 cut(s)	167, 251, 353, 455, 662, 671
BstNI	CCWGG	2 cut(s)	72, 705
BstNSI	RCATGY	3 cut(s)	381, 678, 1018
BstSCI	CCNGG	6 cut(s)	70, 165, 262, 703, 893, 956
BstSFI	CTRYAG	3 cut(s)	184, 243, 840
BstSLI	GKGCMC	1 cut(s)	1138
BstV2I	GAAGAC	2 cut(s)	357, 1213
BstX2I	RGATCY	1 cut(s)	658
BstYI	RGATCY	1 cut(s)	658
BsuRI	GGCC	2 cut(s)	70, 110
BtgZI	GCGATG	1 cut(s)	665
BtrI	CACGTC	1 cut(s)	373
BtsCI	GGATG	3 cut(s)	304, 526, 627
BtsIMutI	CAGTG	2 cut(s)	66, 1136
Cac8I	GCNNGC	3 cut(s)	209, 667, 1016
CfoI	GCGC	1 cut(s)	213
CseI	GACGC	1 cut(s)	362
Csp6I	GTAC	5 cut(s)	533, 734, 983, 1091, 1212
CviAII	CATG	5 cut(s)	378, 398, 675, 1015, 1224
CviQI	GTAC	5 cut(s)	533, 734, 983, 1091, 1212
DdeI	CTNAG	3 cut(s)	544, 591, 645
DpnI	GATC	4 cut(s)	230, 363, 489, 660
DpnII	GATC	4 cut(s)	228, 361, 487, 658
Eam1104I	CTCTTC	2 cut(s)	562, 1200
EarI	CTCTTC	2 cut(s)	562, 1200
Eco147I	AGGCCT	1 cut(s)	70
Eco31I	GGTCTC	1 cut(s)	884
Eco57I	CTGAAG	3 cut(s)	369, 839, 854
EcoRII	CCWGG	2 cut(s)	70, 703
EcoT22I	ATGCAT	1 cut(s)	934
Esp3I	CGTCTC	1 cut(s)	680
FaeI	CATG	5 cut(s)	381, 401, 678, 1018, 1227
FalI	AAGNNNNNCTT	2 cut(s)	935, 967
FatI	CATG	5 cut(s)	377, 397, 674, 1014, 1223
FauI	CCCGC	1 cut(s)	212
FblI	GTMKAC	2 cut(s)	843, 912
FokI	GGATG	3 cut(s)	291, 533, 634
FspBI	CTAG	2 cut(s)	1128, 1160
GlaI	GCGC	1 cut(s)	212
GsaI	CCCAGC	1 cut(s)	360
GsuI	CTGGAG	2 cut(s)	687, 834
HaeIII	GGCC	2 cut(s)	70, 110
HapII	CCGG	5 cut(s)	167, 264, 450, 895, 958
HgaI	GACGC	1 cut(s)	362
HhaI	GCGC	1 cut(s)	213
Hin1II	CATG	5 cut(s)	381, 401, 678, 1018, 1227
Hin6I	GCGC	1 cut(s)	211
HinP1I	GCGC	1 cut(s)	211
HinfI	GANTC	4 cut(s)	178, 278, 527, 865
HpaII	CCGG	5 cut(s)	167, 264, 450, 895, 958
HphI	GGTGA	2 cut(s)	190, 1010
Hpy166II	GTNNAC	6 cut(s)	710, 844, 913, 1093, 1117, 1136
Hpy188I	TCNGA	3 cut(s)	309, 873, 1205
Hpy188III	TCNNGA	5 cut(s)	823, 1068, 1082, 1160, 1174
Hpy8I	GTNNAC	6 cut(s)	710, 844, 913, 1093, 1117, 1136
Hpy99I	CGWCG	1 cut(s)	374
HpyAV	CCTTC	2 cut(s)	200, 309
HpyCH4III	ACNGT	2 cut(s)	61, 1090
HpyCH4IV	ACGT	3 cut(s)	372, 712, 1210
HpyF10VI	GCNNNNNNNGC	6 cut(s)	167, 251, 353, 455, 662, 671
HpyF3I	CTNAG	3 cut(s)	544, 591, 645
HpySE526I	ACGT	3 cut(s)	372, 712, 1210
Hsp92II	CATG	5 cut(s)	381, 401, 678, 1018, 1227
HspAI	GCGC	1 cut(s)	211
Kzo9I	GATC	4 cut(s)	228, 361, 487, 658
LguI	GCTCTTC	2 cut(s)	562, 1200
LmnI	GCTCC	1 cut(s)	706
LweI	GCATC	3 cut(s)	828, 941, 1073
MaeI	CTAG	2 cut(s)	1128, 1160
MaeII	ACGT	3 cut(s)	372, 712, 1210
MaeIII	GTNAC	4 cut(s)	55, 373, 510, 1075
MalI	GATC	4 cut(s)	230, 363, 489, 660
MboI	GATC	4 cut(s)	228, 361, 487, 658
MboII	GAAGA	8 cut(s)	111, 114, 362, 579, 845, 860, 1187, 1218
MfeI	CAATTG	1 cut(s)	900
MflI	RGATCY	1 cut(s)	658
MhlI	GDGCHC	2 cut(s)	574, 1138
MluCI	AATT	4 cut(s)	607, 900, 1033, 1098
MlyI	GAGTC	1 cut(s)	521
MmeI	TCCRAC	5 cut(s)	14, 20, 332, 948, 1183
Mph1103I	ATGCAT	1 cut(s)	934
MseI	TTAA	3 cut(s)	641, 1041, 1152
MslI	CAYNNNNRTG	1 cut(s)	236
MspI	CCGG	5 cut(s)	167, 264, 450, 895, 958
MspR9I	CCNGG	6 cut(s)	72, 167, 264, 705, 895, 958
MunI	CAATTG	1 cut(s)	900
Mva1269I	GAATGC	1 cut(s)	832
MvaI	CCWGG	2 cut(s)	72, 705
MwoI	GCNNNNNNNGC	6 cut(s)	167, 251, 353, 455, 662, 671
NciI	CCSGG	4 cut(s)	167, 264, 895, 958
NdeII	GATC	4 cut(s)	228, 361, 487, 658
NlaIII	CATG	5 cut(s)	381, 401, 678, 1018, 1227
NmuCI	GTSAC	3 cut(s)	55, 373, 510
NsiI	ATGCAT	1 cut(s)	934
NspI	RCATGY	3 cut(s)	381, 678, 1018
PaeI	GCATGC	1 cut(s)	1018
PceI	AGGCCT	1 cut(s)	70
PciI	ACATGT	1 cut(s)	377
PciSI	GCTCTTC	2 cut(s)	562, 1200
PcsI	WCGNNNNNNNCGW	1 cut(s)	1216
PctI	GAATGC	1 cut(s)	832
PfeI	GAWTC	3 cut(s)	178, 278, 865
PflMI	CCANNNNNTGG	1 cut(s)	424
PleI	GAGTC	1 cut(s)	521
PpsI	GAGTC	1 cut(s)	521
PscI	ACATGT	1 cut(s)	377
Psp6I	CCWGG	2 cut(s)	70, 703
PspFI	CCCAGC	1 cut(s)	356
PspGI	CCWGG	2 cut(s)	70, 703
PstI	CTGCAG	1 cut(s)	247
PsuI	RGATCY	1 cut(s)	658
RsaI	GTAC	5 cut(s)	534, 735, 984, 1092, 1213
RsaNI	GTAC	5 cut(s)	533, 734, 983, 1091, 1212
RseI	CAYNNNNRTG	1 cut(s)	236
SapI	GCTCTTC	2 cut(s)	562, 1200
SaqAI	TTAA	3 cut(s)	641, 1041, 1152
Sau3AI	GATC	4 cut(s)	228, 361, 487, 658
SchI	GAGTC	1 cut(s)	521
ScrFI	CCNGG	6 cut(s)	72, 167, 264, 705, 895, 958
SduI	GDGCHC	2 cut(s)	574, 1138
SfaNI	GCATC	3 cut(s)	828, 941, 1073
SfcI	CTRYAG	3 cut(s)	184, 243, 840
SmiMI	CAYNNNNRTG	1 cut(s)	236
SmlI	CTYRAG	2 cut(s)	833, 1172
SmoI	CTYRAG	2 cut(s)	833, 1172
SphI	GCATGC	1 cut(s)	1018
Sse9I	AATT	4 cut(s)	607, 900, 1033, 1098
SseBI	AGGCCT	1 cut(s)	70
SsiI	CCGC	2 cut(s)	205, 731
SspMI	CTAG	2 cut(s)	1128, 1160
StuI	AGGCCT	1 cut(s)	70
StyD4I	CCNGG	6 cut(s)	70, 165, 262, 703, 893, 956
TaaI	ACNGT	2 cut(s)	61, 1090
TaiI	ACGT	3 cut(s)	375, 715, 1213
TaqI	TCGA	1 cut(s)	364
TasI	AATT	4 cut(s)	607, 900, 1033, 1098
TatI	WGTACW	1 cut(s)	1090
TfiI	GAWTC	3 cut(s)	178, 278, 865
Tru1I	TTAA	3 cut(s)	641, 1041, 1152
Tru9I	TTAA	3 cut(s)	641, 1041, 1152
TscAI	CASTG	2 cut(s)	66, 1143
TseFI	GTSAC	3 cut(s)	55, 373, 510
Tsp45I	GTSAC	3 cut(s)	55, 373, 510
TspDTI	ATGAA	1 cut(s)	495
TspGWI	ACGGA	1 cut(s)	520
TspRI	CASTG	2 cut(s)	66, 1143
Van91I	CCANNNNNTGG	1 cut(s)	424
VneI	GTGCAC	1 cut(s)	1134
XapI	RAATTY	2 cut(s)	607, 1033
XbaI	TCTAGA	1 cut(s)	1159
XceI	RCATGY	3 cut(s)	381, 678, 1018
XmiI	GTMKAC	2 cut(s)	843, 912
XspI	CTAG	2 cut(s)	1128, 1160
Zsp2I	ATGCAT	1 cut(s)	934

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.