Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002675

Physical Location & Seq

Genomic Coordinates Reverse (-)

60621633 .. 60626026

Gene Structure 4394 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG389700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGCAGATCTTGCAAGCCCTTCATGTATCTTGGAGACAAGAAAAACTGCTCCAGGTTTACGTTTGGTAGATAAGTGGGCGGTACTCATTGGTGGTGGGAAAAATCACAGAATGGGGTTATTTGATATGGTAATGATAAAAGATAATCATATATCAATAGCTGGAGGCATCATGAATGCCCTCAAGTCTGTAGACCTATATCTTCAGCAAAGGAATCTTCAGATGGAGGTTGAGGTGGAGACCCGGACAATTGACGAAGTAGACAAAGTATTGGACTATGCATCTCAAACAAAGACTTCCTTGACCCGGATAATGTTGGACAATATGGTTGTACCACTATCAAATGGTGATGTTGACGTCAGCATGCTTGAACAAGCTGTGAATTTGATTAAAGGGAGATTTGAGACTGAGGCATCTGGAAATGTTACTCTTGAAACAGTACACAAAATTGGACAAACAGGAGTGGACTACATTTCTAGTGGTGCACTGACACATTCTGTTAAAGCTCTAGACATCTCCCTCAAGATTGATACCGAGTTGGCTCTTCAAGTCGGAAGGCGTACAAAACGAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004514 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009165 GO:0009435 GO:0009507 GO:0009536 GO:0009987 GO:0016054 GO:0016740 GO:0016757 GO:0016763 GO:0017144 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0019752 GO:0034213 GO:0034641 GO:0034654 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043649 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046483 GO:0046496 GO:0046700 GO:0046874 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072524 GO:0072525 GO:0072526 GO:0090407 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

QRPTase_C QRPTase_N

Protein Analysis

191

Amino Acids

20.94

Weight (kDa)

6.09

Isoelectric Point (pI)

28.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QRPTase_C	PF01729	8 - 175	8.2e-49	Quinolinate phosphoribosyl transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01350 AT2G01350 AT2G01350 AT2G01350
fragaria_vesca	FvH4_4g32330 FvH4_4g32330 FvH4_4g32330 FvH4_4g32330
malus_domestica	MD16G1029000.v1.1
prunus_persica	Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1 Prupe.1G323900_v2.0.a1
pyrus_communis	pycom16g02470
rosa_chinensis	RchiOBHm_Chr2g0157601 RchiOBHm_Chr4g0441121
rosa_laevigata	RLG00000006112
rosa_multiflora	Rmu_sc0000607.1_g000026 Rmu_sc0006317.1_g000018 Rmu_sc0017059.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382090
rosa_rugosa	Rorug03G0337500 Rorug04G0331400
rosa_samantha	Rh1AG340100 Rh2BG059800 Rh2BG243400 Rh2BG348100 Rh2DG286800 Rh3BG365900 Rh4AG382900 Rh4BG396800 Rh4CG411800 Rh4DG389700 Rh5BG215200 Rh5BG425100 Rh6BG216200 Rh6DG027200
rosa_wichuraiana	Rw4G033050 Rw6G003900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	360
AccI	GTMKAC	2 cut(s)	192, 261
AciI	CCGC	1 cut(s)	80
AcsI	RAATTY	1 cut(s)	382
AcuI	CTGAAG	2 cut(s)	188, 203
AcyI	GRCGYC	1 cut(s)	357
AfaI	GTAC	4 cut(s)	84, 333, 441, 562
AfiI	CCNNNNNNNGG	1 cut(s)	306
AgsI	TTSAA	3 cut(s)	371, 434, 548
AjnI	CCWGG	1 cut(s)	52
AluBI	AGCT	3 cut(s)	161, 377, 506
AluI	AGCT	3 cut(s)	161, 377, 506
Alw21I	GWGCWC	1 cut(s)	487
Alw26I	GTCTC	3 cut(s)	29, 233, 398
Alw44I	GTGCAC	1 cut(s)	483
ApaLI	GTGCAC	1 cut(s)	483
ApoI	RAATTY	1 cut(s)	382
AsuC2I	CCSGG	2 cut(s)	244, 307
AsuHPI	GGTGA	1 cut(s)	359
BaeGI	GKGCMC	1 cut(s)	487
Bbv12I	GWGCWC	1 cut(s)	487
BccI	CCATC	1 cut(s)	217
BciT130I	CCWGG	1 cut(s)	54
BcnI	CCSGG	2 cut(s)	244, 307
BcoDI	GTCTC	3 cut(s)	29, 233, 398
BfaI	CTAG	2 cut(s)	477, 509
BfmI	CTRYAG	1 cut(s)	189
BglII	AGATCT	1 cut(s)	7
Bme1390I	CCNGG	3 cut(s)	54, 244, 307
BmrFI	CCNGG	3 cut(s)	54, 244, 307
BmsI	GCATC	3 cut(s)	177, 290, 422
BpmI	CTGGAG	2 cut(s)	36, 183
BpuEI	CTTGAG	2 cut(s)	167, 506
BpuMI	CCSGG	2 cut(s)	244, 307
BsaHI	GRCGYC	1 cut(s)	357
BsaI	GGTCTC	1 cut(s)	233
Bsc4I	CCNNNNNNNGG	1 cut(s)	306
BseBI	CCWGG	1 cut(s)	54
BseLI	CCNNNNNNNGG	1 cut(s)	306
BseMII	CTCAG	1 cut(s)	399
BseSI	GKGCMC	1 cut(s)	487
BsiHKAI	GWGCWC	1 cut(s)	487
BsiSI	CCGG	2 cut(s)	244, 307
BslI	CCNNNNNNNGG	1 cut(s)	306
BsmAI	GTCTC	3 cut(s)	29, 233, 398
BsmI	GAATGC	1 cut(s)	181
Bso31I	GGTCTC	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	487
Bsp143I	GATC	1 cut(s)	7
BspACI	CCGC	1 cut(s)	80
BspCNI	CTCAG	1 cut(s)	400
BspHI	TCATGA	1 cut(s)	171
BspQI	GCTCTTC	1 cut(s)	549
BspTNI	GGTCTC	1 cut(s)	233
BssMI	GATC	1 cut(s)	7
BssNI	GRCGYC	1 cut(s)	357
Bst2UI	CCWGG	1 cut(s)	54
Bst4CI	ACNGT	1 cut(s)	439
Bst6I	CTCTTC	1 cut(s)	549
BstACI	GRCGYC	1 cut(s)	357
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstC8I	GCNNGC	2 cut(s)	16, 365
BstDEI	CTNAG	1 cut(s)	408
BstKTI	GATC	1 cut(s)	10
BstMAI	GTCTC	3 cut(s)	29, 233, 398
BstMBI	GATC	1 cut(s)	7
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	54
BstNSI	RCATGY	1 cut(s)	367
BstSCI	CCNGG	3 cut(s)	52, 242, 305
BstSFI	CTRYAG	1 cut(s)	189
BstSLI	GKGCMC	1 cut(s)	487
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
BtsIMutI	CAGTG	1 cut(s)	485
Cac8I	GCNNGC	2 cut(s)	16, 365
CciI	TCATGA	1 cut(s)	171
Csp6I	GTAC	4 cut(s)	83, 332, 440, 561
CviAII	CATG	4 cut(s)	24, 172, 364, 573
CviJI	RGCY	5 cut(s)	18, 161, 377, 506, 542
CviKI_1	RGCY	5 cut(s)	18, 161, 377, 506, 542
CviQI	GTAC	4 cut(s)	83, 332, 440, 561
DdeI	CTNAG	1 cut(s)	408
DpnI	GATC	1 cut(s)	9
DpnII	GATC	1 cut(s)	7
Eam1104I	CTCTTC	1 cut(s)	549
EarI	CTCTTC	1 cut(s)	549
Eco31I	GGTCTC	1 cut(s)	233
Eco57I	CTGAAG	2 cut(s)	188, 203
EcoRII	CCWGG	1 cut(s)	52
EcoT22I	ATGCAT	1 cut(s)	283
FaeI	CATG	4 cut(s)	27, 175, 367, 576
FalI	AAGNNNNNCTT	2 cut(s)	284, 316
FatI	CATG	4 cut(s)	23, 171, 363, 572
FblI	GTMKAC	2 cut(s)	192, 261
FspBI	CTAG	2 cut(s)	477, 509
GsuI	CTGGAG	2 cut(s)	36, 183
HapII	CCGG	2 cut(s)	244, 307
Hin1I	GRCGYC	1 cut(s)	357
Hin1II	CATG	4 cut(s)	27, 175, 367, 576
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HinfI	GANTC	1 cut(s)	214
HpaII	CCGG	2 cut(s)	244, 307
HphI	GGTGA	1 cut(s)	359
Hpy166II	GTNNAC	7 cut(s)	59, 193, 262, 355, 442, 466, 485
Hpy188I	TCNGA	2 cut(s)	222, 554
Hpy188III	TCNNGA	5 cut(s)	172, 417, 431, 509, 523
Hpy8I	GTNNAC	7 cut(s)	59, 193, 262, 355, 442, 466, 485
HpyAV	CCTTC	2 cut(s)	30, 549
HpyCH4III	ACNGT	1 cut(s)	439
HpyCH4IV	ACGT	2 cut(s)	61, 357
HpyCH4V	TGCA	3 cut(s)	14, 281, 485
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	1 cut(s)	408
HpySE526I	ACGT	2 cut(s)	61, 357
Hsp92I	GRCGYC	1 cut(s)	357
Hsp92II	CATG	4 cut(s)	27, 175, 367, 576
Kzo9I	GATC	1 cut(s)	7
LguI	GCTCTTC	1 cut(s)	549
LmnI	GCTCC	1 cut(s)	55
LpnPI	CCDG	7 cut(s)	39, 66, 147, 257, 320, 402, 444
LweI	GCATC	3 cut(s)	177, 290, 422
MaeI	CTAG	2 cut(s)	477, 509
MaeII	ACGT	2 cut(s)	61, 357
MaeIII	GTNAC	1 cut(s)	424
MalI	GATC	1 cut(s)	9
MboI	GATC	1 cut(s)	7
MboII	GAAGA	3 cut(s)	194, 209, 536
MfeI	CAATTG	1 cut(s)	249
MflI	RGATCY	1 cut(s)	7
MhlI	GDGCHC	1 cut(s)	487
MluCI	AATT	3 cut(s)	249, 382, 447
MmeI	TCCRAC	2 cut(s)	297, 532
MnlI	CCTC	6 cut(s)	158, 191, 220, 226, 403, 530
Mph1103I	ATGCAT	1 cut(s)	283
MseI	TTAA	2 cut(s)	390, 501
MspI	CCGG	2 cut(s)	244, 307
MspR9I	CCNGG	3 cut(s)	54, 244, 307
MunI	CAATTG	1 cut(s)	249
Mva1269I	GAATGC	1 cut(s)	181
MvaI	CCWGG	1 cut(s)	54
MwoI	GCNNNNNNNGC	1 cut(s)	11
NciI	CCSGG	2 cut(s)	244, 307
NdeII	GATC	1 cut(s)	7
NlaIII	CATG	4 cut(s)	27, 175, 367, 576
NsiI	ATGCAT	1 cut(s)	283
NspI	RCATGY	1 cut(s)	367
PaeI	GCATGC	1 cut(s)	367
PagI	TCATGA	1 cut(s)	171
PciSI	GCTCTTC	1 cut(s)	549
PctI	GAATGC	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	214
Psp6I	CCWGG	1 cut(s)	52
PspGI	CCWGG	1 cut(s)	52
PsuI	RGATCY	1 cut(s)	7
RsaI	GTAC	4 cut(s)	84, 333, 441, 562
RsaNI	GTAC	4 cut(s)	83, 332, 440, 561
SapI	GCTCTTC	1 cut(s)	549
SaqAI	TTAA	2 cut(s)	390, 501
Sau3AI	GATC	1 cut(s)	7
ScrFI	CCNGG	3 cut(s)	54, 244, 307
SduI	GDGCHC	1 cut(s)	487
SetI	ASST	9 cut(s)	58, 64, 163, 198, 231, 237, 360, 379, 508
SfaNI	GCATC	3 cut(s)	177, 290, 422
SfcI	CTRYAG	1 cut(s)	189
SmlI	CTYRAG	2 cut(s)	182, 521
SmoI	CTYRAG	2 cut(s)	182, 521
SphI	GCATGC	1 cut(s)	367
Sse9I	AATT	3 cut(s)	249, 382, 447
SsiI	CCGC	1 cut(s)	80
SspMI	CTAG	2 cut(s)	477, 509
StyD4I	CCNGG	3 cut(s)	52, 242, 305
TaaI	ACNGT	1 cut(s)	439
TaiI	ACGT	2 cut(s)	64, 360
TasI	AATT	3 cut(s)	249, 382, 447
TatI	WGTACW	1 cut(s)	439
TfiI	GAWTC	1 cut(s)	214
Tru1I	TTAA	2 cut(s)	390, 501
Tru9I	TTAA	2 cut(s)	390, 501
TscAI	CASTG	1 cut(s)	492
TspDTI	ATGAA	2 cut(s)	12, 188
TspRI	CASTG	1 cut(s)	492
VneI	GTGCAC	1 cut(s)	483
XapI	RAATTY	1 cut(s)	382
XbaI	TCTAGA	1 cut(s)	508
XceI	RCATGY	1 cut(s)	367
XmiI	GTMKAC	2 cut(s)	192, 261
XspI	CTAG	2 cut(s)	477, 509
ZraI	GACGTC	1 cut(s)	358
Zsp2I	ATGCAT	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.