AT2G02850

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0003671
Physical Location & Seq
Reverse (-)
826299 .. 827994
1696 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G02850.1

Sequence Viewer

Length: 390 bp
ATGGCCAAGGGAAGAGGCAGTGCATCATGGTCGGCTCGAGCCATAGTGACTCTCATGGCTGTGTCAGTGTTGTTGCTTCAAGCTGACTACGTTCAAGCTGCAACGTACACGGTCGGTGACTCTGGTATCTGGACCTTTAACGCTGTGGGTTGGCCTAAAGGCAAACACTTTAGAGCCGGCGACGTTCTTGTGTTTAACTATAATCCGAGGATGCACAACGTAGTGAAGGTAGATAGCGGAAGTTACAACAACTGCAAAACACCGACAGGGGCAAAACCTTACACTTCAGGCAAAGATCGTATAACTTTGTCTAAAGGACAAAACTTTTTCATCTGCAATTTTCCAAACCATTGCGAAAGCGATATGAAAATCGCAGTCACCGCGGTTTGA

Protein Analysis

129

Amino Acids

14.04

Weight (kDa)

9.55

Isoelectric Point (pI)

8.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 44 - 122 5.8e-28 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 383
AciI CCGC 3 cut(s) 237, 381, 383
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 270
AfaI GTAC 1 cut(s) 107
AgsI TTSAA 2 cut(s) 80, 95
AluBI AGCT 2 cut(s) 83, 98
AluI AGCT 2 cut(s) 83, 98
Ama87I CYCGRG 1 cut(s) 36
AoxI GGCC 2 cut(s) 3, 152
ApeKI GCWGC 1 cut(s) 98
AspS9I GGNCC 1 cut(s) 132
AsuHPI GGTGA 2 cut(s) 128, 370
AvaI CYCGRG 1 cut(s) 36
AvaII GGWCC 1 cut(s) 132
BaeI ACNNNNGTAYC 2 cut(s) 109, 142
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 1 cut(s) 85
BcgI CGANNNNNNTGC 2 cut(s) 12, 46
BisI GCNGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 100
Bme18I GGWCC 1 cut(s) 132
BmeT110I CYCGRG 1 cut(s) 36
BmgT120I GGNCC 1 cut(s) 132
BmsI GCATC 2 cut(s) 32, 201
BsaJI CCNNGG 3 cut(s) 6, 206, 381
Bse118I RCCGGY 1 cut(s) 176
Bse3DI GCAATG 1 cut(s) 349
BseDI CCNNGG 3 cut(s) 6, 206, 381
BseGI GGATG 1 cut(s) 216
BseMI GCAATG 1 cut(s) 349
BseXI GCAGC 1 cut(s) 85
Bsh1236I CGCG 1 cut(s) 383
Bsh1285I CGRYCG 1 cut(s) 114
BshFI GGCC 2 cut(s) 5, 154
BsiEI CGRYCG 1 cut(s) 114
BsiHKCI CYCGRG 1 cut(s) 36
BsiSI CCGG 1 cut(s) 177
BsnI GGCC 2 cut(s) 5, 154
BsoBI CYCGRG 1 cut(s) 36
Bsp143I GATC 1 cut(s) 295
BspACI CCGC 3 cut(s) 237, 381, 383
BspANI GGCC 2 cut(s) 5, 154
BspFNI CGCG 1 cut(s) 383
BsrDI GCAATG 1 cut(s) 349
BsrFI RCCGGY 1 cut(s) 176
BssAI RCCGGY 1 cut(s) 176
BssECI CCNNGG 3 cut(s) 6, 206, 381
BssMI GATC 1 cut(s) 295
BssT1I CCWWGG 1 cut(s) 6
Bst4CI ACNGT 1 cut(s) 112
Bst6I CTCTTC 1 cut(s) 7
BstC8I GCNNGC 1 cut(s) 178
BstDSI CCRYGG 1 cut(s) 381
BstF5I GGATG 1 cut(s) 216
BstFNI CGCG 1 cut(s) 383
BstKTI GATC 1 cut(s) 298
BstMBI GATC 1 cut(s) 295
BstMCI CGRYCG 1 cut(s) 114
BstMWI GCNNNNNNNGC 1 cut(s) 380
BstUI CGCG 1 cut(s) 383
BstV1I GCAGC 1 cut(s) 85
BsuRI GGCC 2 cut(s) 5, 154
BtgI CCRYGG 1 cut(s) 381
BtsCI GGATG 1 cut(s) 216
BtsI GCAGTG 1 cut(s) 25
BtsIMutI CAGTG 2 cut(s) 25, 72
Cac8I GCNNGC 1 cut(s) 178
Cfr10I RCCGGY 1 cut(s) 176
Cfr13I GGNCC 1 cut(s) 132
Cfr42I CCGCGG 1 cut(s) 384
Csp6I GTAC 1 cut(s) 106
CviAII CATG 2 cut(s) 27, 55
CviJI RGCY 8 cut(s) 5, 35, 41, 59, 83, 98, 154, 176
CviKI_1 RGCY 8 cut(s) 5, 35, 41, 59, 83, 98, 154, 176
CviQI GTAC 1 cut(s) 106
DpnI GATC 1 cut(s) 297
DpnII GATC 1 cut(s) 295
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 7
EarI CTCTTC 1 cut(s) 7
Eco130I CCWWGG 1 cut(s) 6
Eco47I GGWCC 1 cut(s) 132
Eco57I CTGAAG 1 cut(s) 270
Eco88I CYCGRG 1 cut(s) 36
EcoT14I CCWWGG 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 6
FaeI CATG 2 cut(s) 30, 58
FaiI YATR 6 cut(s) 28, 44, 56, 201, 302, 365
FatI CATG 2 cut(s) 26, 54
Fnu4HI GCNGC 1 cut(s) 99
FokI GGATG 1 cut(s) 223
Fsp4HI GCNGC 1 cut(s) 99
GluI GCNGC 1 cut(s) 99
HaeIII GGCC 2 cut(s) 5, 154
HapII CCGG 1 cut(s) 177
Hin1II CATG 2 cut(s) 30, 58
HinfI GANTC 2 cut(s) 49, 119
HpaII CCGG 1 cut(s) 177
HphI GGTGA 2 cut(s) 128, 370
Hpy166II GTNNAC 1 cut(s) 108
Hpy188I TCNGA 1 cut(s) 207
Hpy188III TCNNGA 1 cut(s) 130
Hpy8I GTNNAC 1 cut(s) 108
Hpy99I CGWCG 1 cut(s) 185
HpyAV CCTTC 1 cut(s) 220
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4IV ACGT 4 cut(s) 90, 104, 183, 219
HpyCH4V TGCA 5 cut(s) 23, 101, 214, 255, 336
HpyF10VI GCNNNNNNNGC 1 cut(s) 380
HpySE526I ACGT 4 cut(s) 90, 104, 183, 219
Hsp92II CATG 2 cut(s) 30, 58
KroI GCCGGC 1 cut(s) 176
KroNI GCCGGC 1 cut(s) 178
KspI CCGCGG 1 cut(s) 384
Kzo9I GATC 1 cut(s) 295
LpnPI CCDG 5 cut(s) 108, 115, 190, 252, 273
Lsp1109I GCAGC 1 cut(s) 85
LweI GCATC 2 cut(s) 32, 201
MaeII ACGT 4 cut(s) 90, 104, 183, 219
MaeIII GTNAC 4 cut(s) 46, 116, 242, 376
MalI GATC 1 cut(s) 297
MboI GATC 1 cut(s) 295
MboII GAAGA 1 cut(s) 24
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 337
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 43, 113
MnlI CCTC 2 cut(s) 8, 201
Mox20I TGGCCA 1 cut(s) 5
MroNI GCCGGC 1 cut(s) 176
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 138, 195
MslI CAYNNNNRTG 1 cut(s) 59
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 383
MspI CCGG 1 cut(s) 177
MvnI CGCG 1 cut(s) 383
MwoI GCNNNNNNNGC 1 cut(s) 380
NaeI GCCGGC 1 cut(s) 178
NdeII GATC 1 cut(s) 295
NgoMIV GCCGGC 1 cut(s) 176
NlaIII CATG 2 cut(s) 30, 58
NmuCI GTSAC 3 cut(s) 46, 116, 376
PaeR7I CTCGAG 1 cut(s) 36
PdiI GCCGGC 1 cut(s) 178
PkrI GCNGC 1 cut(s) 100
PleI GAGTC 2 cut(s) 43, 113
PpsI GAGTC 2 cut(s) 43, 113
PspPI GGNCC 1 cut(s) 132
PspXI VCTCGAGB 1 cut(s) 36
RsaI GTAC 1 cut(s) 107
RsaNI GTAC 1 cut(s) 106
RseI CAYNNNNRTG 1 cut(s) 59
SacII CCGCGG 1 cut(s) 384
SaqAI TTAA 2 cut(s) 138, 195
SatI GCNGC 1 cut(s) 99
Sau3AI GATC 1 cut(s) 295
Sau96I GGNCC 1 cut(s) 132
SchI GAGTC 2 cut(s) 43, 113
SetI ASST 9 cut(s) 85, 93, 100, 107, 137, 186, 222, 231, 280
SfaNI GCATC 2 cut(s) 32, 201
Sfr274I CTCGAG 1 cut(s) 36
Sfr303I CCGCGG 1 cut(s) 384
SgrBI CCGCGG 1 cut(s) 384
SinI GGWCC 1 cut(s) 132
SlaI CTCGAG 1 cut(s) 36
SmiMI CAYNNNNRTG 1 cut(s) 59
SmlI CTYRAG 1 cut(s) 36
SmoI CTYRAG 1 cut(s) 36
Sse9I AATT 1 cut(s) 337
SsiI CCGC 3 cut(s) 237, 381, 383
StyI CCWWGG 1 cut(s) 6
TaaI ACNGT 1 cut(s) 112
TaiI ACGT 4 cut(s) 93, 107, 186, 222
TaqI TCGA 1 cut(s) 37
TasI AATT 1 cut(s) 337
Tru1I TTAA 2 cut(s) 138, 195
Tru9I TTAA 2 cut(s) 138, 195
TscAI CASTG 2 cut(s) 25, 72
TseFI GTSAC 3 cut(s) 46, 116, 376
TseI GCWGC 1 cut(s) 98
Tsp45I GTSAC 3 cut(s) 46, 116, 376
TspDTI ATGAA 2 cut(s) 319, 380
TspRI CASTG 2 cut(s) 25, 72
VpaK11BI GGWCC 1 cut(s) 132
XhoI CTCGAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.