Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001846.1

Orthogroup ID

OG0003671

Physical Location & Seq

Genomic Coordinates Reverse (-)

40383 .. 42522

Gene Structure 2140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001846.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

atgaactctcagggaagaggcagtgccagatttaatattatgcaggtggttgcagtgctactgctactatgcctcatggcggttcagttggaatatgttaatgcagctacctatacagttggagactccggtgggtggagcttcaagactgataaatggcccaacggcaagcaatttagagccggtgatgttctaattttcaactatgactctacaattcacaatgtggtagctgtggggaagggtggttatagcagctgcacaactccaagaggtgccaaggtgcttacatcggggaaggatcgggtgaagctcgcgagaggacagaactacttcatatgcagctttccaggccactgcgagtccgggatgaagcacttattaacttcctctggtcctcctcaatggtctgaagtactggattttattgaccctcttgttacggatgaaatgaatcataatcttgttgcccctgtctcattggaggaagtcaaagctgtgacttttgatatgggagctttgaaagctctgggccctgatggcttccctggtacattctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0009856 GO:0009908 GO:0016020 GO:0022414 GO:0031012 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0044421 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0046658 GO:0048046 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0051704 GO:0061458 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

186

Amino Acids

20.1

Weight (kDa)

6.89

Isoelectric Point (pI)

28.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02850
fragaria_vesca	FvH4_2g15050 FvH4_2g15050 FvH4_5g30150 FvH4_5g30170 FvH4_5g30180
malus_domestica	MD08G1224900.v1.1 MD15G1418000.v1.1 MD15G1418100.v1.1
prunus_persica	Prupe.1G562200_v2.0.a1 Prupe.1G562300_v2.0.a1 Prupe.8G016000_v2.0.a1
pyrus_communis	pycom05g00630 pycom15g37120 pycom15g37130
rosa_chinensis	RchiOBHm_Chr6g0277611 RchiOBHm_Chr7g0224441
rosa_laevigata	RLG00000001895 RLG00000013286
rosa_multiflora	Rmu_sc0001846.1_g000011 Rmu_ssc0000051.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234760 Rroxscaffold_7G00191160
rosa_rugosa	Rorug06G0110400 Rorug07G0223200
rosa_samantha	Rh6AG220600 Rh6BG224600 Rh6CG226800 Rh6DG217400 Rh7AG380000 Rh7BG359400 Rh7CG399500 Rh7DG369000
rosa_wichuraiana	Rw6G019340 Rw7G031170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	34
Acc36I	ACCTGC	1 cut(s)	34
AccB1I	GGYRCC	1 cut(s)	275
AccII	CGCG	1 cut(s)	317
AciI	CCGC	1 cut(s)	80
AclWI	GGATC	1 cut(s)	309
AcuI	CTGAAG	1 cut(s)	432
AdeI	CACNNNGTG	1 cut(s)	226
AfaI	GTAC	2 cut(s)	417, 553
AfiI	CCNNNNNNNGG	2 cut(s)	79, 135
AgsI	TTSAA	3 cut(s)	145, 202, 523
AjnI	CCWGG	2 cut(s)	349, 547
AluBI	AGCT	9 cut(s)	107, 141, 233, 258, 313, 345, 497, 518, 527
AluI	AGCT	9 cut(s)	107, 141, 233, 258, 313, 345, 497, 518, 527
Alw26I	GTCTC	2 cut(s)	117, 481
AlwI	GGATC	1 cut(s)	309
AoxI	GGCC	3 cut(s)	158, 352, 532
ApaI	GGGCCC	1 cut(s)	536
ApeKI	GCWGC	4 cut(s)	104, 255, 258, 342
Asp700I	GAANNNNTTC	1 cut(s)	332
AspS9I	GGNCC	4 cut(s)	159, 395, 532, 533
AsuC2I	CCSGG	1 cut(s)	367
AsuHPI	GGTGA	2 cut(s)	197, 319
AvaII	GGWCC	1 cut(s)	395
BaeGI	GKGCMC	1 cut(s)	536
BanI	GGYRCC	1 cut(s)	275
BanII	GRGCYC	1 cut(s)	536
BbvI	GCAGC	4 cut(s)	116, 245, 267, 354
BccI	CCATC	1 cut(s)	533
BceAI	ACGGC	1 cut(s)	181
BciT130I	CCWGG	2 cut(s)	351, 549
BcnI	CCSGG	1 cut(s)	367
BcoDI	GTCTC	2 cut(s)	117, 481
BfaI	CTAG	1 cut(s)	559
BfuAI	ACCTGC	1 cut(s)	34
BglI	GCCNNNNNGGC	1 cut(s)	540
BisI	GCNGC	4 cut(s)	105, 256, 259, 343
BlsI	GCNGC	4 cut(s)	106, 257, 260, 344
BmcAI	AGTACT	1 cut(s)	417
Bme1390I	CCNGG	3 cut(s)	351, 367, 549
Bme18I	GGWCC	1 cut(s)	395
BmgT120I	GGNCC	4 cut(s)	159, 395, 532, 533
BmiI	GGNNCC	2 cut(s)	277, 534
BmrFI	CCNGG	3 cut(s)	351, 367, 549
BpuMI	CCSGG	1 cut(s)	367
BsaJI	CCNNGG	2 cut(s)	279, 547
BsaWI	WCCGGW	1 cut(s)	128
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 135
Bse118I	RCCGGY	1 cut(s)	182
Bse1I	ACTGG	1 cut(s)	423
BseBI	CCWGG	2 cut(s)	351, 549
BseDI	CCNNGG	2 cut(s)	279, 547
BseGI	GGATG	2 cut(s)	375, 451
BseLI	CCNNNNNNNGG	2 cut(s)	79, 135
BseMII	CTCAG	1 cut(s)	23
BseNI	ACTGG	1 cut(s)	423
BseRI	GAGGAG	1 cut(s)	390
BseSI	GKGCMC	1 cut(s)	536
BseXI	GCAGC	4 cut(s)	116, 245, 267, 354
BsgI	GTGCAG	1 cut(s)	244
Bsh1236I	CGCG	1 cut(s)	317
BshFI	GGCC	3 cut(s)	160, 354, 534
BshNI	GGYRCC	1 cut(s)	275
BsiSI	CCGG	3 cut(s)	129, 183, 366
BslI	CCNNNNNNNGG	2 cut(s)	79, 135
BsmAI	GTCTC	2 cut(s)	117, 481
BsnI	GGCC	3 cut(s)	160, 354, 534
Bsp120I	GGGCCC	1 cut(s)	532
Bsp1286I	GDGCHC	1 cut(s)	536
Bsp143I	GATC	1 cut(s)	301
Bsp68I	TCGCGA	1 cut(s)	317
BspACI	CCGC	1 cut(s)	80
BspANI	GGCC	3 cut(s)	160, 354, 534
BspCNI	CTCAG	1 cut(s)	22
BspFNI	CGCG	1 cut(s)	317
BspLI	GGNNCC	2 cut(s)	277, 534
BspMI	ACCTGC	1 cut(s)	34
BspPI	GGATC	1 cut(s)	309
BspT107I	GGYRCC	1 cut(s)	275
BsrFI	RCCGGY	1 cut(s)	182
BsrI	ACTGG	1 cut(s)	423
BssAI	RCCGGY	1 cut(s)	182
BssECI	CCNNGG	2 cut(s)	279, 547
BssMI	GATC	1 cut(s)	301
BssT1I	CCWWGG	1 cut(s)	279
Bst2UI	CCWGG	2 cut(s)	351, 549
Bst4CI	ACNGT	1 cut(s)	118
Bst6I	CTCTTC	1 cut(s)	10
BstC8I	GCNNGC	2 cut(s)	170, 315
BstDEI	CTNAG	1 cut(s)	9
BstF5I	GGATG	2 cut(s)	375, 451
BstFNI	CGCG	1 cut(s)	317
BstKTI	GATC	1 cut(s)	304
BstMAI	GTCTC	2 cut(s)	117, 481
BstMBI	GATC	1 cut(s)	301
BstMWI	GCNNNNNNNGC	3 cut(s)	351, 524, 540
BstNI	CCWGG	2 cut(s)	351, 549
BstSCI	CCNGG	3 cut(s)	349, 365, 547
BstSLI	GKGCMC	1 cut(s)	536
BstUI	CGCG	1 cut(s)	317
BstV1I	GCAGC	4 cut(s)	116, 245, 267, 354
BsuRI	GGCC	3 cut(s)	160, 354, 534
BtsCI	GGATG	2 cut(s)	375, 451
BtsI	GCAGTG	3 cut(s)	28, 60, 355
BtsIMutI	CAGTG	3 cut(s)	28, 60, 355
BtuMI	TCGCGA	1 cut(s)	317
BveI	ACCTGC	1 cut(s)	34
Cac8I	GCNNGC	2 cut(s)	170, 315
Cfr10I	RCCGGY	1 cut(s)	182
Cfr13I	GGNCC	4 cut(s)	159, 395, 532, 533
Csp6I	GTAC	2 cut(s)	416, 552
CviAII	CATG	1 cut(s)	76
CviQI	GTAC	2 cut(s)	416, 552
DdeI	CTNAG	1 cut(s)	9
DpnI	GATC	1 cut(s)	303
DpnII	GATC	1 cut(s)	301
DraIII	CACNNNGTG	1 cut(s)	226
Eam1104I	CTCTTC	1 cut(s)	10
EarI	CTCTTC	1 cut(s)	10
Eco130I	CCWWGG	1 cut(s)	279
Eco24I	GRGCYC	1 cut(s)	536
Eco47I	GGWCC	1 cut(s)	395
Eco57I	CTGAAG	1 cut(s)	432
EcoO109I	RGGNCCY	1 cut(s)	533
EcoRII	CCWGG	2 cut(s)	349, 547
EcoT14I	CCWWGG	1 cut(s)	279
EcoT38I	GRGCYC	1 cut(s)	536
ErhI	CCWWGG	1 cut(s)	279
FaeI	CATG	1 cut(s)	79
FatI	CATG	1 cut(s)	75
FauNDI	CATATG	1 cut(s)	338
Fnu4HI	GCNGC	4 cut(s)	105, 256, 259, 343
FokI	GGATG	2 cut(s)	382, 458
FriOI	GRGCYC	1 cut(s)	536
Fsp4HI	GCNGC	4 cut(s)	105, 256, 259, 343
FspBI	CTAG	1 cut(s)	559
GluI	GCNGC	4 cut(s)	105, 256, 259, 343
HaeIII	GGCC	3 cut(s)	160, 354, 534
HapII	CCGG	3 cut(s)	129, 183, 366
Hin1II	CATG	1 cut(s)	79
HinfI	GANTC	4 cut(s)	125, 209, 362, 454
HpaII	CCGG	3 cut(s)	129, 183, 366
HphI	GGTGA	2 cut(s)	197, 319
Hpy188I	TCNGA	1 cut(s)	412
Hpy188III	TCNNGA	2 cut(s)	145, 316
HpyAV	CCTTC	2 cut(s)	235, 292
HpyCH4III	ACNGT	1 cut(s)	118
HpyCH4V	TGCA	5 cut(s)	43, 53, 104, 261, 342
HpyF10VI	GCNNNNNNNGC	3 cut(s)	351, 524, 540
HpyF3I	CTNAG	1 cut(s)	9
Hsp92II	CATG	1 cut(s)	79
Kzo9I	GATC	1 cut(s)	301
LmnI	GCTCC	2 cut(s)	138, 515
Lsp1109I	GCAGC	4 cut(s)	116, 245, 267, 354
MaeI	CTAG	1 cut(s)	559
MaeIII	GTNAC	2 cut(s)	439, 499
MalI	GATC	1 cut(s)	303
MboI	GATC	1 cut(s)	301
MboII	GAAGA	1 cut(s)	27
MhlI	GDGCHC	1 cut(s)	536
MluCI	AATT	3 cut(s)	173, 195, 216
MlyI	GAGTC	3 cut(s)	119, 203, 371
MmeI	TCCRAC	2 cut(s)	69, 100
MnlI	CCTC	9 cut(s)	11, 83, 266, 314, 400, 408, 411, 444, 478
MroXI	GAANNNNTTC	1 cut(s)	332
MseI	TTAA	3 cut(s)	33, 99, 383
MspA1I	CMGCKG	1 cut(s)	258
MspI	CCGG	3 cut(s)	129, 183, 366
MspR9I	CCNGG	3 cut(s)	351, 367, 549
MvaI	CCWGG	2 cut(s)	351, 549
MvnI	CGCG	1 cut(s)	317
MwoI	GCNNNNNNNGC	3 cut(s)	351, 524, 540
NciI	CCSGG	1 cut(s)	367
NdeI	CATATG	1 cut(s)	338
NdeII	GATC	1 cut(s)	301
NlaIII	CATG	1 cut(s)	79
NlaIV	GGNNCC	2 cut(s)	277, 534
NmuCI	GTSAC	1 cut(s)	499
NruI	TCGCGA	1 cut(s)	317
PaqCI	CACCTGC	1 cut(s)	34
PdmI	GAANNNNTTC	1 cut(s)	332
PfeI	GAWTC	1 cut(s)	454
PfoI	TCCNGGA	1 cut(s)	365
PkrI	GCNGC	4 cut(s)	106, 257, 260, 344
PleI	GAGTC	3 cut(s)	119, 203, 370
PpsI	GAGTC	3 cut(s)	119, 203, 370
Psp6I	CCWGG	2 cut(s)	349, 547
PspGI	CCWGG	2 cut(s)	349, 547
PspN4I	GGNNCC	2 cut(s)	277, 534
PspOMI	GGGCCC	1 cut(s)	532
PspPI	GGNCC	4 cut(s)	159, 395, 532, 533
PvuII	CAGCTG	1 cut(s)	258
RruI	TCGCGA	1 cut(s)	317
RsaI	GTAC	2 cut(s)	417, 553
RsaNI	GTAC	2 cut(s)	416, 552
SaqAI	TTAA	3 cut(s)	33, 99, 383
SatI	GCNGC	4 cut(s)	105, 256, 259, 343
Sau3AI	GATC	1 cut(s)	301
Sau96I	GGNCC	4 cut(s)	159, 395, 532, 533
ScaI	AGTACT	1 cut(s)	417
SchI	GAGTC	3 cut(s)	119, 203, 371
ScrFI	CCNGG	3 cut(s)	351, 367, 549
SduI	GDGCHC	1 cut(s)	536
SinI	GGWCC	1 cut(s)	395
Sse9I	AATT	3 cut(s)	173, 195, 216
SsiI	CCGC	1 cut(s)	80
SspI	AATATT	1 cut(s)	37
SspMI	CTAG	1 cut(s)	559
StyD4I	CCNGG	3 cut(s)	349, 365, 547
StyI	CCWWGG	1 cut(s)	279
TaaI	ACNGT	1 cut(s)	118
TasI	AATT	3 cut(s)	173, 195, 216
TatI	WGTACW	1 cut(s)	415
TfiI	GAWTC	1 cut(s)	454
Tru1I	TTAA	3 cut(s)	33, 99, 383
Tru9I	TTAA	3 cut(s)	33, 99, 383
TscAI	CASTG	3 cut(s)	28, 60, 362
TseFI	GTSAC	1 cut(s)	499
TseI	GCWGC	4 cut(s)	104, 255, 258, 342
Tsp45I	GTSAC	1 cut(s)	499
TspDTI	ATGAA	5 cut(s)	17, 325, 386, 462, 467
TspGWI	ACGGA	1 cut(s)	458
TspRI	CASTG	3 cut(s)	28, 60, 362
VpaK11BI	GGWCC	1 cut(s)	395
XmnI	GAANNNNTTC	1 cut(s)	332
XspI	CTAG	1 cut(s)	559
ZrmI	AGTACT	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.