Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0003671

Physical Location & Seq

Genomic Coordinates Forward (+)

44478369 .. 44479999

Gene Structure 1631 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G031170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGCTATGGGAAGAGGCAGTGCAACGGCGGTGCTCGTGGTGTTTGTGTTGGTGGTGCTGAGTTCGGAGTGGGCCGATGCGGCGACCTACACTGTTGGAGACAGAGGTGGTTGGACCTTCAACGTTGCTGGGTGGCCGAGAGGAAAGACTTTCCGAGCCGGTGACATACTTGTTTTCAACTATGCGTCTGCCGCTCACAATGTGGTAGCTGTGAACAAAGTGGGGTACCAGAAATGTAGTACAACTCCAGGAAATGCCAAAGTGTATCAAACTGGGAAAGATCGCATCAGACTTGCGAAAGGACAGAACTTCTTCATCTGTAGTTTCCCTGGACACTGTCAATCTGGAATGAAAGTTGCCGTTACTGCAACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0009856 GO:0009908 GO:0016020 GO:0022414 GO:0031012 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0044421 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0046658 GO:0048046 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0051704 GO:0061458 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

124

Amino Acids

13.2

Weight (kDa)

9.82

Isoelectric Point (pI)

11.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	38 - 117	3.5e-26	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02850
fragaria_vesca	FvH4_2g15050 FvH4_2g15050 FvH4_5g30150 FvH4_5g30170 FvH4_5g30180
malus_domestica	MD08G1224900.v1.1 MD15G1418000.v1.1 MD15G1418100.v1.1
prunus_persica	Prupe.1G562200_v2.0.a1 Prupe.1G562300_v2.0.a1 Prupe.8G016000_v2.0.a1
pyrus_communis	pycom05g00630 pycom15g37120 pycom15g37130
rosa_chinensis	RchiOBHm_Chr6g0277611 RchiOBHm_Chr7g0224441
rosa_laevigata	RLG00000001895 RLG00000013286
rosa_multiflora	Rmu_sc0001846.1_g000011 Rmu_ssc0000051.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234760 Rroxscaffold_7G00191160
rosa_rugosa	Rorug06G0110400 Rorug07G0223200
rosa_samantha	Rh6AG220600 Rh6BG224600 Rh6CG226800 Rh6DG217400 Rh7AG380000 Rh7BG359400 Rh7CG399500 Rh7DG369000
rosa_wichuraiana	Rw6G019340 Rw7G031170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	225
AccB1I	GGYRCC	1 cut(s)	225
AccBSI	CCGCTC	1 cut(s)	194
AciI	CCGC	3 cut(s)	29, 80, 192
AclI	AACGTT	1 cut(s)	123
AcoI	YGGCCR	1 cut(s)	134
AdeI	CACNNNGTG	1 cut(s)	202
AfaI	GTAC	2 cut(s)	227, 241
AgsI	TTSAA	2 cut(s)	121, 178
AjnI	CCWGG	2 cut(s)	247, 328
AluBI	AGCT	1 cut(s)	209
AluI	AGCT	1 cut(s)	209
Alw21I	GWGCWC	1 cut(s)	36
Alw26I	GTCTC	1 cut(s)	93
AoxI	GGCC	2 cut(s)	72, 134
Asp700I	GAANNNNTTC	1 cut(s)	311
Asp718I	GGTACC	1 cut(s)	225
AspS9I	GGNCC	2 cut(s)	72, 114
AsuHPI	GGTGA	1 cut(s)	173
AvaII	GGWCC	1 cut(s)	114
BanI	GGYRCC	1 cut(s)	225
BauI	CACGAG	1 cut(s)	35
Bbv12I	GWGCWC	1 cut(s)	36
BceAI	ACGGC	2 cut(s)	42, 344
BciT130I	CCWGG	2 cut(s)	249, 330
BcoDI	GTCTC	1 cut(s)	93
BfaI	CTAG	1 cut(s)	373
BfmI	CTRYAG	1 cut(s)	319
BglI	GCCNNNNNGGC	1 cut(s)	80
BisI	GCNGC	2 cut(s)	81, 192
BlsI	GCNGC	2 cut(s)	82, 193
Bme1390I	CCNGG	2 cut(s)	249, 330
Bme18I	GGWCC	1 cut(s)	114
BmgT120I	GGNCC	2 cut(s)	72, 114
BmiI	GGNNCC	1 cut(s)	227
BmrFI	CCNGG	2 cut(s)	249, 330
BmrI	ACTGGG	1 cut(s)	282
BmsI	GCATC	2 cut(s)	67, 294
BmuI	ACTGGG	1 cut(s)	282
BpmI	CTGGAG	1 cut(s)	231
BsaJI	CCNNGG	1 cut(s)	328
Bse118I	RCCGGY	1 cut(s)	158
Bse1I	ACTGG	1 cut(s)	277
BseBI	CCWGG	2 cut(s)	249, 330
BseDI	CCNNGG	1 cut(s)	328
BseMII	CTCAG	1 cut(s)	50
BseNI	ACTGG	1 cut(s)	277
BseYI	CCCAGC	1 cut(s)	128
BshFI	GGCC	2 cut(s)	74, 136
BshNI	GGYRCC	1 cut(s)	225
BsiHKAI	GWGCWC	1 cut(s)	36
BsiSI	CCGG	1 cut(s)	159
BsmAI	GTCTC	1 cut(s)	93
BsnI	GGCC	2 cut(s)	74, 136
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp143I	GATC	1 cut(s)	280
BspACI	CCGC	3 cut(s)	29, 80, 192
BspANI	GGCC	2 cut(s)	74, 136
BspCNI	CTCAG	1 cut(s)	51
BspLI	GGNNCC	1 cut(s)	227
BspT107I	GGYRCC	1 cut(s)	225
BsrBI	CCGCTC	1 cut(s)	194
BsrFI	RCCGGY	1 cut(s)	158
BsrI	ACTGG	1 cut(s)	277
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	1 cut(s)	328
BssMI	GATC	1 cut(s)	280
BssSI	CACGAG	1 cut(s)	35
Bst2BI	CACGAG	1 cut(s)	35
Bst2UI	CCWGG	2 cut(s)	249, 330
Bst4CI	ACNGT	2 cut(s)	94, 338
Bst6I	CTCTTC	1 cut(s)	7
BstDEI	CTNAG	1 cut(s)	59
BstKTI	GATC	1 cut(s)	283
BstMAI	GTCTC	1 cut(s)	93
BstMBI	GATC	1 cut(s)	280
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 191, 365
BstNI	CCWGG	2 cut(s)	249, 330
BstSCI	CCNGG	2 cut(s)	247, 328
BstSFI	CTRYAG	1 cut(s)	319
BsuRI	GGCC	2 cut(s)	74, 136
BtsI	GCAGTG	1 cut(s)	25
BtsIMutI	CAGTG	3 cut(s)	25, 90, 334
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	2 cut(s)	72, 114
CseI	GACGC	1 cut(s)	174
Csp6I	GTAC	2 cut(s)	226, 240
CviJI	RGCY	5 cut(s)	5, 74, 136, 158, 209
CviKI_1	RGCY	5 cut(s)	5, 74, 136, 158, 209
CviQI	GTAC	2 cut(s)	226, 240
DdeI	CTNAG	1 cut(s)	59
DpnI	GATC	1 cut(s)	282
DpnII	GATC	1 cut(s)	280
DraIII	CACNNNGTG	1 cut(s)	202
EaeI	YGGCCR	1 cut(s)	134
Eam1104I	CTCTTC	1 cut(s)	7
EarI	CTCTTC	1 cut(s)	7
Eco47I	GGWCC	1 cut(s)	114
EcoRII	CCWGG	2 cut(s)	247, 328
FaiI	YATR	3 cut(s)	8, 167, 183
Fnu4HI	GCNGC	2 cut(s)	81, 192
Fsp4HI	GCNGC	2 cut(s)	81, 192
FspBI	CTAG	1 cut(s)	373
GluI	GCNGC	2 cut(s)	81, 192
GsaI	CCCAGC	1 cut(s)	132
GsuI	CTGGAG	1 cut(s)	231
HaeIII	GGCC	2 cut(s)	74, 136
HapII	CCGG	1 cut(s)	159
HgaI	GACGC	1 cut(s)	174
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	1 cut(s)	173
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	3 cut(s)	67, 155, 290
Hpy188III	TCNNGA	1 cut(s)	345
Hpy8I	GTNNAC	1 cut(s)	214
HpyAV	CCTTC	1 cut(s)	127
HpyCH4III	ACNGT	2 cut(s)	94, 338
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	2 cut(s)	23, 368
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 191, 365
HpyF3I	CTNAG	1 cut(s)	59
HpySE526I	ACGT	1 cut(s)	123
KpnI	GGTACC	1 cut(s)	229
Kzo9I	GATC	1 cut(s)	280
LpnPI	CCDG	9 cut(s)	114, 172, 234, 242, 258, 261, 315, 330, 342
LweI	GCATC	2 cut(s)	67, 294
MaeI	CTAG	1 cut(s)	373
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	2 cut(s)	161, 361
MalI	GATC	1 cut(s)	282
MbiI	CCGCTC	1 cut(s)	194
MboI	GATC	1 cut(s)	280
MboII	GAAGA	2 cut(s)	24, 304
MhlI	GDGCHC	1 cut(s)	36
MmeI	TCCRAC	2 cut(s)	76, 92
MnlI	CCTC	3 cut(s)	8, 98, 134
MroXI	GAANNNNTTC	1 cut(s)	311
MspI	CCGG	1 cut(s)	159
MspR9I	CCNGG	2 cut(s)	249, 330
MvaI	CCWGG	2 cut(s)	249, 330
MwoI	GCNNNNNNNGC	3 cut(s)	80, 191, 365
NdeII	GATC	1 cut(s)	280
NlaIV	GGNNCC	1 cut(s)	227
NmeAIII	GCCGAG	1 cut(s)	162
NmuCI	GTSAC	1 cut(s)	161
PdmI	GAANNNNTTC	1 cut(s)	311
PflFI	GACNNNGTC	1 cut(s)	336
PfoI	TCCNGGA	1 cut(s)	247
PkrI	GCNGC	2 cut(s)	82, 193
Psp1406I	AACGTT	1 cut(s)	123
Psp6I	CCWGG	2 cut(s)	247, 328
PspFI	CCCAGC	1 cut(s)	128
PspGI	CCWGG	2 cut(s)	247, 328
PspN4I	GGNNCC	1 cut(s)	227
PspPI	GGNCC	2 cut(s)	72, 114
PsyI	GACNNNGTC	1 cut(s)	336
RsaI	GTAC	2 cut(s)	227, 241
RsaNI	GTAC	2 cut(s)	226, 240
SatI	GCNGC	2 cut(s)	81, 192
Sau3AI	GATC	1 cut(s)	280
Sau96I	GGNCC	2 cut(s)	72, 114
ScrFI	CCNGG	2 cut(s)	249, 330
SduI	GDGCHC	1 cut(s)	36
SetI	ASST	6 cut(s)	89, 109, 119, 126, 211, 374
SfaNI	GCATC	2 cut(s)	67, 294
SfcI	CTRYAG	1 cut(s)	319
SinI	GGWCC	1 cut(s)	114
SsiI	CCGC	3 cut(s)	29, 80, 192
SspMI	CTAG	1 cut(s)	373
StyD4I	CCNGG	2 cut(s)	247, 328
TaaI	ACNGT	2 cut(s)	94, 338
TaiI	ACGT	1 cut(s)	126
TatI	WGTACW	1 cut(s)	239
TauI	GCSGC	2 cut(s)	83, 194
TscAI	CASTG	3 cut(s)	25, 97, 341
TseFI	GTSAC	1 cut(s)	161
Tsp45I	GTSAC	1 cut(s)	161
TspDTI	ATGAA	2 cut(s)	304, 365
TspRI	CASTG	3 cut(s)	25, 97, 341
Tth111I	GACNNNGTC	1 cut(s)	336
VpaK11BI	GGWCC	1 cut(s)	114
XmnI	GAANNNNTTC	1 cut(s)	311
XspI	CTAG	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.