Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003671

Physical Location & Seq

Genomic Coordinates Reverse (-)

1494960 .. 1496601

Gene Structure 1642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G016000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGTCTGAGCAGGGAAGAGGCAGTGCAGGAACCATAGGAGTGGTGGTAGTTTTATGCCTAATGGTTCAGCTGGGATGCAGCAACGCAGCCACTTATAAGGTTGGAGAGTCTGGTGGCTGGAGCTTCAACACAGATAGCTGGCCTAATGGAAAGCAATTTAGAGCTGGCGATGTGCTTTCATTCAACTATGATCCAACACTACACAATGTGGTAGCTGTGGACAAGGGTGGCTACAGCAGCTGCACAACTCCGAATGGTGCAAAGGTGTATAAATCTGGAAAGGACCAAATAAGGCTAGGGAGGGGACAAAACTACTTCATATGCAATTTTCCAGGGCATTGCCAGTCTGGGATGAAGATTGCTATCAATGCTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0009856 GO:0009908 GO:0016020 GO:0022414 GO:0031012 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0044421 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0046658 GO:0048046 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0051704 GO:0061458 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

126

Amino Acids

13.26

Weight (kDa)

8.88

Isoelectric Point (pI)

24.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02850
fragaria_vesca	FvH4_2g15050 FvH4_2g15050 FvH4_5g30150 FvH4_5g30170 FvH4_5g30180
malus_domestica	MD08G1224900.v1.1 MD15G1418000.v1.1 MD15G1418100.v1.1
prunus_persica	Prupe.1G562200_v2.0.a1 Prupe.1G562300_v2.0.a1 Prupe.8G016000_v2.0.a1
pyrus_communis	pycom05g00630 pycom15g37120 pycom15g37130
rosa_chinensis	RchiOBHm_Chr6g0277611 RchiOBHm_Chr7g0224441
rosa_laevigata	RLG00000001895 RLG00000013286
rosa_multiflora	Rmu_sc0001846.1_g000011 Rmu_ssc0000051.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234760 Rroxscaffold_7G00191160
rosa_rugosa	Rorug06G0110400 Rorug07G0223200
rosa_samantha	Rh6AG220600 Rh6BG224600 Rh6CG226800 Rh6DG217400 Rh7AG380000 Rh7BG359400 Rh7CG399500 Rh7DG369000
rosa_wichuraiana	Rw6G019340 Rw7G031170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	96
AclWI	GGATC	1 cut(s)	185
AdeI	CACNNNGTG	1 cut(s)	208
AgsI	TTSAA	2 cut(s)	127, 184
AjnI	CCWGG	1 cut(s)	331
AluBI	AGCT	6 cut(s)	70, 123, 138, 164, 215, 240
AluI	AGCT	6 cut(s)	70, 123, 138, 164, 215, 240
AlwI	GGATC	1 cut(s)	185
AlwNI	CAGNNNCTG	1 cut(s)	240
AoxI	GGCC	1 cut(s)	140
ApeKI	GCWGC	4 cut(s)	78, 86, 237, 240
AspS9I	GGNCC	1 cut(s)	283
AvaII	GGWCC	1 cut(s)	283
BbvI	GCAGC	4 cut(s)	90, 98, 227, 249
BciT130I	CCWGG	1 cut(s)	333
BfaI	CTAG	1 cut(s)	296
BfmI	CTRYAG	1 cut(s)	232
BisI	GCNGC	4 cut(s)	79, 87, 238, 241
BlsI	GCNGC	4 cut(s)	80, 88, 239, 242
Bme1390I	CCNGG	1 cut(s)	333
Bme18I	GGWCC	1 cut(s)	283
BmgT120I	GGNCC	1 cut(s)	283
BmiI	GGNNCC	1 cut(s)	31
BmrFI	CCNGG	1 cut(s)	333
BmsI	GCATC	1 cut(s)	65
BpmI	CTGGAG	1 cut(s)	139
BsaBI	GATNNNNATC	1 cut(s)	362
BsaJI	CCNNGG	1 cut(s)	332
BsaXI	ACNNNNNCTCC	2 cut(s)	30, 60
Bse1I	ACTGG	1 cut(s)	343
Bse3DI	GCAATG	1 cut(s)	337
Bse8I	GATNNNNATC	1 cut(s)	362
BseBI	CCWGG	1 cut(s)	333
BseDI	CCNNGG	1 cut(s)	332
BseGI	GGATG	2 cut(s)	80, 357
BseJI	GATNNNNATC	1 cut(s)	362
BseMI	GCAATG	1 cut(s)	337
BseNI	ACTGG	1 cut(s)	343
BseXI	GCAGC	4 cut(s)	90, 98, 227, 249
BseYI	CCCAGC	1 cut(s)	70
BsgI	GTGCAG	2 cut(s)	45, 226
BshFI	GGCC	1 cut(s)	142
BslFI	GGGAC	1 cut(s)	318
BsmFI	GGGAC	1 cut(s)	318
BsnI	GGCC	1 cut(s)	142
Bsp143I	GATC	1 cut(s)	190
BspANI	GGCC	1 cut(s)	142
BspLI	GGNNCC	1 cut(s)	31
BspPI	GGATC	1 cut(s)	185
BsrDI	GCAATG	1 cut(s)	337
BsrI	ACTGG	1 cut(s)	343
BssECI	CCNNGG	1 cut(s)	332
BssMI	GATC	1 cut(s)	190
Bst2UI	CCWGG	1 cut(s)	333
Bst6I	CTCTTC	1 cut(s)	10
BstC8I	GCNNGC	2 cut(s)	140, 166
BstDEI	CTNAG	1 cut(s)	6
BstF5I	GGATG	2 cut(s)	80, 357
BstKTI	GATC	1 cut(s)	193
BstMBI	GATC	1 cut(s)	190
BstMWI	GCNNNNNNNGC	2 cut(s)	237, 368
BstNI	CCWGG	1 cut(s)	333
BstSCI	CCNGG	1 cut(s)	331
BstSFI	CTRYAG	1 cut(s)	232
BstV1I	GCAGC	4 cut(s)	90, 98, 227, 249
BstXI	CCANNNNNNTGG	1 cut(s)	40
BsuRI	GGCC	1 cut(s)	142
BtgZI	GCGATG	1 cut(s)	183
BtsCI	GGATG	2 cut(s)	80, 357
BtsI	GCAGTG	1 cut(s)	28
BtsIMutI	CAGTG	1 cut(s)	28
Cac8I	GCNNGC	2 cut(s)	140, 166
CaiI	CAGNNNCTG	1 cut(s)	240
Cfr13I	GGNCC	1 cut(s)	283
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
DraIII	CACNNNGTG	1 cut(s)	208
Eam1104I	CTCTTC	1 cut(s)	10
EarI	CTCTTC	1 cut(s)	10
Eco47I	GGWCC	1 cut(s)	283
EcoRII	CCWGG	1 cut(s)	331
FaiI	YATR	7 cut(s)	35, 55, 96, 189, 270, 320, 322
FaqI	GGGAC	1 cut(s)	318
FauNDI	CATATG	1 cut(s)	320
Fnu4HI	GCNGC	4 cut(s)	79, 87, 238, 241
FokI	GGATG	2 cut(s)	87, 364
Fsp4HI	GCNGC	4 cut(s)	79, 87, 238, 241
FspBI	CTAG	1 cut(s)	296
GluI	GCNGC	4 cut(s)	79, 87, 238, 241
GsaI	CCCAGC	1 cut(s)	74
GsuI	CTGGAG	1 cut(s)	139
HaeIII	GGCC	1 cut(s)	142
HinfI	GANTC	1 cut(s)	107
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	2 cut(s)	7, 252
Hpy188III	TCNNGA	1 cut(s)	276
Hpy8I	GTNNAC	1 cut(s)	220
HpyCH4V	TGCA	5 cut(s)	26, 78, 243, 260, 324
HpyF10VI	GCNNNNNNNGC	2 cut(s)	237, 368
HpyF3I	CTNAG	1 cut(s)	6
Kzo9I	GATC	1 cut(s)	190
LmnI	GCTCC	1 cut(s)	120
Lsp1109I	GCAGC	4 cut(s)	90, 98, 227, 249
LweI	GCATC	1 cut(s)	65
MaeI	CTAG	1 cut(s)	296
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MboII	GAAGA	2 cut(s)	27, 367
MluCI	AATT	2 cut(s)	155, 325
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	2 cut(s)	82, 218
MnlI	CCTC	2 cut(s)	11, 294
MslI	CAYNNNNRTG	1 cut(s)	38
MspA1I	CMGCKG	2 cut(s)	70, 240
MspR9I	CCNGG	1 cut(s)	333
MvaI	CCWGG	1 cut(s)	333
MwoI	GCNNNNNNNGC	2 cut(s)	237, 368
NdeI	CATATG	1 cut(s)	320
NdeII	GATC	1 cut(s)	190
NlaIV	GGNNCC	1 cut(s)	31
PkrI	GCNGC	4 cut(s)	80, 88, 239, 242
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
PsiI	TTATAA	1 cut(s)	96
Psp6I	CCWGG	1 cut(s)	331
PspFI	CCCAGC	1 cut(s)	70
PspGI	CCWGG	1 cut(s)	331
PspN4I	GGNNCC	1 cut(s)	31
PspPI	GGNCC	1 cut(s)	283
PstNI	CAGNNNCTG	1 cut(s)	240
PvuII	CAGCTG	2 cut(s)	70, 240
RseI	CAYNNNNRTG	1 cut(s)	38
SatI	GCNGC	4 cut(s)	79, 87, 238, 241
Sau3AI	GATC	1 cut(s)	190
Sau96I	GGNCC	1 cut(s)	283
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	1 cut(s)	333
SetI	ASST	8 cut(s)	72, 102, 125, 140, 166, 217, 242, 267
SfaNI	GCATC	1 cut(s)	65
SfcI	CTRYAG	1 cut(s)	232
SinI	GGWCC	1 cut(s)	283
SmiMI	CAYNNNNRTG	1 cut(s)	38
Sse9I	AATT	2 cut(s)	155, 325
SspMI	CTAG	1 cut(s)	296
StyD4I	CCNGG	1 cut(s)	331
TasI	AATT	2 cut(s)	155, 325
TscAI	CASTG	1 cut(s)	28
TseI	GCWGC	4 cut(s)	78, 86, 237, 240
TspDTI	ATGAA	3 cut(s)	168, 307, 368
TspRI	CASTG	1 cut(s)	28
VpaK11BI	GGWCC	1 cut(s)	283
XcmI	CCANNNNNNNNNTGG	1 cut(s)	40
XspI	CTAG	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.