Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000051.1

Orthogroup ID

OG0003671

Physical Location & Seq

Genomic Coordinates Reverse (-)

229 .. 1019

Gene Structure 791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000051.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

atgggaagaggcagtgcaacggcggtgctcgtggtgtttgtgttggtggtgctgagttcggagtgggccgatgcggcgacctacactgttggagacagaggtggttggaccttcaacgttgctgggtggccgagaggaaagactttccgagccggtgacatacttgttttcaactatgcgtctgccgctcacaatgtggtagctgtgaacaaagtggggtaccagaaatgtagtacaactccaggaaatgccaaagtgtatcaaacagggaaagatcgcatcagacttgcgaaaggacagaacttcttcatctgtagtttccctggacactgccaatctggaatgaaagttgccgttactgcaacctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0009856 GO:0009908 GO:0016020 GO:0022414 GO:0031012 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0044421 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0046658 GO:0048046 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0051704 GO:0061458 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

122

Amino Acids

12.99

Weight (kDa)

9.82

Isoelectric Point (pI)

10.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02850
fragaria_vesca	FvH4_2g15050 FvH4_2g15050 FvH4_5g30150 FvH4_5g30170 FvH4_5g30180
malus_domestica	MD08G1224900.v1.1 MD15G1418000.v1.1 MD15G1418100.v1.1
prunus_persica	Prupe.1G562200_v2.0.a1 Prupe.1G562300_v2.0.a1 Prupe.8G016000_v2.0.a1
pyrus_communis	pycom05g00630 pycom15g37120 pycom15g37130
rosa_chinensis	RchiOBHm_Chr6g0277611 RchiOBHm_Chr7g0224441
rosa_laevigata	RLG00000001895 RLG00000013286
rosa_multiflora	Rmu_sc0001846.1_g000011 Rmu_ssc0000051.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234760 Rroxscaffold_7G00191160
rosa_rugosa	Rorug06G0110400 Rorug07G0223200
rosa_samantha	Rh6AG220600 Rh6BG224600 Rh6CG226800 Rh6DG217400 Rh7AG380000 Rh7BG359400 Rh7CG399500 Rh7DG369000
rosa_wichuraiana	Rw6G019340 Rw7G031170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	219
AccB1I	GGYRCC	1 cut(s)	219
AccBSI	CCGCTC	1 cut(s)	188
AciI	CCGC	3 cut(s)	23, 74, 186
AclI	AACGTT	1 cut(s)	117
AcoI	YGGCCR	1 cut(s)	128
AdeI	CACNNNGTG	1 cut(s)	196
AfaI	GTAC	2 cut(s)	221, 235
AgsI	TTSAA	2 cut(s)	115, 172
AjnI	CCWGG	2 cut(s)	241, 322
AluBI	AGCT	1 cut(s)	203
AluI	AGCT	1 cut(s)	203
Alw21I	GWGCWC	1 cut(s)	30
Alw26I	GTCTC	1 cut(s)	87
AoxI	GGCC	2 cut(s)	66, 128
Asp700I	GAANNNNTTC	1 cut(s)	305
Asp718I	GGTACC	1 cut(s)	219
AspS9I	GGNCC	2 cut(s)	66, 108
AsuHPI	GGTGA	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	108
BanI	GGYRCC	1 cut(s)	219
BauI	CACGAG	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	30
BceAI	ACGGC	2 cut(s)	36, 338
BciT130I	CCWGG	2 cut(s)	243, 324
BcoDI	GTCTC	1 cut(s)	87
BfaI	CTAG	1 cut(s)	367
BfmI	CTRYAG	1 cut(s)	313
BglI	GCCNNNNNGGC	1 cut(s)	74
BisI	GCNGC	2 cut(s)	75, 186
BlsI	GCNGC	2 cut(s)	76, 187
Bme1390I	CCNGG	2 cut(s)	243, 324
Bme18I	GGWCC	1 cut(s)	108
BmgT120I	GGNCC	2 cut(s)	66, 108
BmiI	GGNNCC	1 cut(s)	221
BmrFI	CCNGG	2 cut(s)	243, 324
BmsI	GCATC	2 cut(s)	61, 288
BpmI	CTGGAG	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	322
Bse118I	RCCGGY	1 cut(s)	152
BseBI	CCWGG	2 cut(s)	243, 324
BseDI	CCNNGG	1 cut(s)	322
BseMII	CTCAG	1 cut(s)	44
BseYI	CCCAGC	1 cut(s)	122
BshFI	GGCC	2 cut(s)	68, 130
BshNI	GGYRCC	1 cut(s)	219
BsiHKAI	GWGCWC	1 cut(s)	30
BsiSI	CCGG	1 cut(s)	153
BsmAI	GTCTC	1 cut(s)	87
BsnI	GGCC	2 cut(s)	68, 130
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp143I	GATC	1 cut(s)	274
BspACI	CCGC	3 cut(s)	23, 74, 186
BspANI	GGCC	2 cut(s)	68, 130
BspCNI	CTCAG	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	221
BspT107I	GGYRCC	1 cut(s)	219
BsrBI	CCGCTC	1 cut(s)	188
BsrFI	RCCGGY	1 cut(s)	152
BssAI	RCCGGY	1 cut(s)	152
BssECI	CCNNGG	1 cut(s)	322
BssMI	GATC	1 cut(s)	274
BssSI	CACGAG	1 cut(s)	29
Bst2BI	CACGAG	1 cut(s)	29
Bst2UI	CCWGG	2 cut(s)	243, 324
Bst4CI	ACNGT	1 cut(s)	88
BstDEI	CTNAG	1 cut(s)	53
BstKTI	GATC	1 cut(s)	277
BstMAI	GTCTC	1 cut(s)	87
BstMBI	GATC	1 cut(s)	274
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 185, 359
BstNI	CCWGG	2 cut(s)	243, 324
BstSCI	CCNGG	2 cut(s)	241, 322
BstSFI	CTRYAG	1 cut(s)	313
BsuRI	GGCC	2 cut(s)	68, 130
BtsI	GCAGTG	2 cut(s)	19, 328
BtsIMutI	CAGTG	3 cut(s)	19, 84, 328
Cfr10I	RCCGGY	1 cut(s)	152
Cfr13I	GGNCC	2 cut(s)	66, 108
CseI	GACGC	1 cut(s)	168
Csp6I	GTAC	2 cut(s)	220, 234
CviJI	RGCY	4 cut(s)	68, 130, 152, 203
CviKI_1	RGCY	4 cut(s)	68, 130, 152, 203
CviQI	GTAC	2 cut(s)	220, 234
DdeI	CTNAG	1 cut(s)	53
DpnI	GATC	1 cut(s)	276
DpnII	GATC	1 cut(s)	274
DraIII	CACNNNGTG	1 cut(s)	196
EaeI	YGGCCR	1 cut(s)	128
Eco47I	GGWCC	1 cut(s)	108
EcoRII	CCWGG	2 cut(s)	241, 322
FaiI	YATR	2 cut(s)	161, 177
Fnu4HI	GCNGC	2 cut(s)	75, 186
Fsp4HI	GCNGC	2 cut(s)	75, 186
FspBI	CTAG	1 cut(s)	367
GluI	GCNGC	2 cut(s)	75, 186
GsaI	CCCAGC	1 cut(s)	126
GsuI	CTGGAG	1 cut(s)	225
HaeIII	GGCC	2 cut(s)	68, 130
HapII	CCGG	1 cut(s)	153
HgaI	GACGC	1 cut(s)	168
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	1 cut(s)	167
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	3 cut(s)	61, 149, 284
Hpy188III	TCNNGA	1 cut(s)	339
Hpy8I	GTNNAC	1 cut(s)	208
HpyAV	CCTTC	1 cut(s)	121
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	2 cut(s)	17, 362
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 185, 359
HpyF3I	CTNAG	1 cut(s)	53
HpySE526I	ACGT	1 cut(s)	117
KpnI	GGTACC	1 cut(s)	223
Kzo9I	GATC	1 cut(s)	274
LpnPI	CCDG	9 cut(s)	108, 166, 228, 236, 252, 255, 309, 324, 336
LweI	GCATC	2 cut(s)	61, 288
MaeI	CTAG	1 cut(s)	367
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	2 cut(s)	155, 355
MalI	GATC	1 cut(s)	276
MbiI	CCGCTC	1 cut(s)	188
MboI	GATC	1 cut(s)	274
MboII	GAAGA	2 cut(s)	18, 298
MhlI	GDGCHC	1 cut(s)	30
MmeI	TCCRAC	2 cut(s)	70, 86
MnlI	CCTC	2 cut(s)	92, 128
MroXI	GAANNNNTTC	1 cut(s)	305
MspI	CCGG	1 cut(s)	153
MspR9I	CCNGG	2 cut(s)	243, 324
MvaI	CCWGG	2 cut(s)	243, 324
MwoI	GCNNNNNNNGC	3 cut(s)	74, 185, 359
NdeII	GATC	1 cut(s)	274
NlaIV	GGNNCC	1 cut(s)	221
NmeAIII	GCCGAG	1 cut(s)	156
NmuCI	GTSAC	1 cut(s)	155
PdmI	GAANNNNTTC	1 cut(s)	305
PfoI	TCCNGGA	1 cut(s)	241
PkrI	GCNGC	2 cut(s)	76, 187
Psp1406I	AACGTT	1 cut(s)	117
Psp6I	CCWGG	2 cut(s)	241, 322
PspFI	CCCAGC	1 cut(s)	122
PspGI	CCWGG	2 cut(s)	241, 322
PspN4I	GGNNCC	1 cut(s)	221
PspPI	GGNCC	2 cut(s)	66, 108
RsaI	GTAC	2 cut(s)	221, 235
RsaNI	GTAC	2 cut(s)	220, 234
SatI	GCNGC	2 cut(s)	75, 186
Sau3AI	GATC	1 cut(s)	274
Sau96I	GGNCC	2 cut(s)	66, 108
ScrFI	CCNGG	2 cut(s)	243, 324
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	6 cut(s)	83, 103, 113, 120, 205, 368
SfaNI	GCATC	2 cut(s)	61, 288
SfcI	CTRYAG	1 cut(s)	313
SinI	GGWCC	1 cut(s)	108
SsiI	CCGC	3 cut(s)	23, 74, 186
SspMI	CTAG	1 cut(s)	367
StyD4I	CCNGG	2 cut(s)	241, 322
TaaI	ACNGT	1 cut(s)	88
TaiI	ACGT	1 cut(s)	120
TatI	WGTACW	1 cut(s)	233
TauI	GCSGC	2 cut(s)	77, 188
TscAI	CASTG	3 cut(s)	19, 91, 335
TseFI	GTSAC	1 cut(s)	155
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	2 cut(s)	298, 359
TspRI	CASTG	3 cut(s)	19, 91, 335
VpaK11BI	GGWCC	1 cut(s)	108
XmnI	GAANNNNTTC	1 cut(s)	305
XspI	CTAG	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.