pycom15g37120

Basic blue

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0003671
Physical Location & Seq
Forward (+)
37030707 .. 37031940
1234 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g37120.2

Sequence Viewer

Length: 375 bp
ATGGCCACCCAGGTTAGAGGCAGTGCAATTGTTACCGCAGTGATAGCGATAGGGTTGTGCATGGTGCTTCACGGTGAGACTGCTCATGCCGAAACCTTCACCGTCGGAGAGGGTGATGGCTGGAACCTAAAGGTTCATGACTGGCCTAATGGCAAGAACTTTACTGCCCATGATACGTTGGTGTTCAAATACAACAATGCATTCCACAATGTGGCAGTCGTAGATGAAATTGGTTTCAGGACATGCACAGTGGGCGACAAACTCTTCTCGTCGGGAAACGATGAAATCAAAATTCAGCAAGGACAAAACTACTTCATCTGCGGTTTTCCTGGCCACTGTGCTGCTGGGATGAAGGTAGCAGTCACTGCTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

125

Amino Acids

13.33

Weight (kDa)

6.26

Isoelectric Point (pI)

7.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 211
AciI CCGC 2 cut(s) 36, 321
AcoI YGGCCR 2 cut(s) 3, 331
AcsI RAATTY 1 cut(s) 291
AdeI CACNNNGTG 1 cut(s) 211
AfiI CCNNNNNNNGG 1 cut(s) 211
AgsI TTSAA 1 cut(s) 187
AjnI CCWGG 2 cut(s) 9, 328
Alw26I GTCTC 1 cut(s) 71
AlwNI CAGNNNCTG 1 cut(s) 365
AoxI GGCC 3 cut(s) 3, 143, 331
ApeKI GCWGC 1 cut(s) 341
ApoI RAATTY 1 cut(s) 291
AsuHPI GGTGA 3 cut(s) 86, 91, 125
BaeI ACNNNNGTAYC 2 cut(s) 165, 198
BalI TGGCCA 2 cut(s) 5, 333
BbvI GCAGC 1 cut(s) 328
BccI CCATC 1 cut(s) 110
BciT130I CCWGG 2 cut(s) 11, 330
BcoDI GTCTC 1 cut(s) 71
BisI GCNGC 1 cut(s) 342
BlsI GCNGC 1 cut(s) 343
Bme1390I CCNGG 2 cut(s) 11, 330
BmiI GGNNCC 1 cut(s) 125
BmrFI CCNGG 2 cut(s) 11, 330
BsaJI CCNNGG 1 cut(s) 9
Bsc4I CCNNNNNNNGG 1 cut(s) 211
Bse1I ACTGG 1 cut(s) 146
BseBI CCWGG 2 cut(s) 11, 330
BseDI CCNNGG 1 cut(s) 9
BseGI GGATG 1 cut(s) 354
BseLI CCNNNNNNNGG 1 cut(s) 211
BseNI ACTGG 1 cut(s) 146
BseXI GCAGC 1 cut(s) 328
BseYI CCCAGC 1 cut(s) 344
BshFI GGCC 3 cut(s) 5, 145, 333
BslI CCNNNNNNNGG 1 cut(s) 211
BsmAI GTCTC 1 cut(s) 71
BsmI GAATGC 1 cut(s) 200
BsnI GGCC 3 cut(s) 5, 145, 333
BspACI CCGC 2 cut(s) 36, 321
BspANI GGCC 3 cut(s) 5, 145, 333
BspHI TCATGA 1 cut(s) 136
BspLI GGNNCC 1 cut(s) 125
BsrI ACTGG 1 cut(s) 146
BssECI CCNNGG 1 cut(s) 9
Bst2UI CCWGG 2 cut(s) 11, 330
Bst4CI ACNGT 4 cut(s) 74, 103, 250, 338
Bst6I CTCTTC 1 cut(s) 269
BstAPI GCANNNNNTGC 1 cut(s) 365
BstF5I GGATG 1 cut(s) 354
BstMAI GTCTC 1 cut(s) 71
BstMWI GCNNNNNNNGC 3 cut(s) 44, 252, 365
BstNI CCWGG 2 cut(s) 11, 330
BstNSI RCATGY 1 cut(s) 246
BstSCI CCNGG 2 cut(s) 9, 328
BstV1I GCAGC 1 cut(s) 328
BsuRI GGCC 3 cut(s) 5, 145, 333
BtsCI GGATG 1 cut(s) 354
BtsI GCAGTG 3 cut(s) 28, 45, 363
BtsIMutI CAGTG 5 cut(s) 28, 45, 255, 334, 363
CaiI CAGNNNCTG 1 cut(s) 365
CciI TCATGA 1 cut(s) 136
CviAII CATG 5 cut(s) 61, 86, 137, 170, 243
CviJI RGCY 4 cut(s) 5, 120, 145, 333
CviKI_1 RGCY 4 cut(s) 5, 120, 145, 333
DraIII CACNNNGTG 1 cut(s) 211
EaeI YGGCCR 2 cut(s) 3, 331
Eam1104I CTCTTC 1 cut(s) 269
EarI CTCTTC 1 cut(s) 269
EcoRII CCWGG 2 cut(s) 9, 328
EcoT22I ATGCAT 1 cut(s) 202
FaeI CATG 5 cut(s) 64, 89, 140, 173, 246
FaiI YATR 5 cut(s) 62, 87, 138, 171, 244
FatI CATG 5 cut(s) 60, 85, 136, 169, 242
Fnu4HI GCNGC 1 cut(s) 342
FokI GGATG 1 cut(s) 361
Fsp4HI GCNGC 1 cut(s) 342
GluI GCNGC 1 cut(s) 342
GsaI CCCAGC 1 cut(s) 348
HaeIII GGCC 3 cut(s) 5, 145, 333
Hin1II CATG 5 cut(s) 64, 89, 140, 173, 246
HphI GGTGA 3 cut(s) 86, 91, 125
Hpy188I TCNGA 1 cut(s) 107
Hpy188III TCNNGA 3 cut(s) 137, 238, 273
Hpy99I CGWCG 2 cut(s) 107, 274
HpyAV CCTTC 2 cut(s) 106, 346
HpyCH4III ACNGT 4 cut(s) 74, 103, 250, 338
HpyCH4IV ACGT 1 cut(s) 176
HpyCH4V TGCA 4 cut(s) 26, 60, 200, 246
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 252, 365
HpySE526I ACGT 1 cut(s) 176
Hsp92II CATG 5 cut(s) 64, 89, 140, 173, 246
LpnPI CCDG 7 cut(s) 23, 106, 127, 223, 315, 330, 342
Lsp1109I GCAGC 1 cut(s) 328
MaeII ACGT 1 cut(s) 176
MaeIII GTNAC 2 cut(s) 31, 361
MboII GAAGA 1 cut(s) 256
MfeI CAATTG 1 cut(s) 27
MlsI TGGCCA 2 cut(s) 5, 333
MluCI AATT 3 cut(s) 27, 228, 291
MluNI TGGCCA 2 cut(s) 5, 333
MmeI TCCRAC 1 cut(s) 85
MnlI CCTC 2 cut(s) 11, 103
Mox20I TGGCCA 2 cut(s) 5, 333
Mph1103I ATGCAT 1 cut(s) 202
MscI TGGCCA 2 cut(s) 5, 333
Msp20I TGGCCA 2 cut(s) 5, 333
MspR9I CCNGG 2 cut(s) 11, 330
MunI CAATTG 1 cut(s) 27
Mva1269I GAATGC 1 cut(s) 200
MvaI CCWGG 2 cut(s) 11, 330
MwoI GCNNNNNNNGC 3 cut(s) 44, 252, 365
NlaIII CATG 5 cut(s) 64, 89, 140, 173, 246
NlaIV GGNNCC 1 cut(s) 125
NmuCI GTSAC 1 cut(s) 361
NsiI ATGCAT 1 cut(s) 202
NspI RCATGY 1 cut(s) 246
PagI TCATGA 1 cut(s) 136
PctI GAATGC 1 cut(s) 200
PflMI CCANNNNNTGG 1 cut(s) 211
PkrI GCNGC 1 cut(s) 343
Psp6I CCWGG 2 cut(s) 9, 328
PspFI CCCAGC 1 cut(s) 344
PspGI CCWGG 2 cut(s) 9, 328
PspN4I GGNNCC 1 cut(s) 125
PstNI CAGNNNCTG 1 cut(s) 365
SatI GCNGC 1 cut(s) 342
ScrFI CCNGG 2 cut(s) 11, 330
SetI ASST 6 cut(s) 15, 98, 129, 135, 179, 357
Sse9I AATT 3 cut(s) 27, 228, 291
SsiI CCGC 2 cut(s) 36, 321
StyD4I CCNGG 2 cut(s) 9, 328
TaaI ACNGT 4 cut(s) 74, 103, 250, 338
TaiI ACGT 1 cut(s) 179
TasI AATT 3 cut(s) 27, 228, 291
TscAI CASTG 5 cut(s) 28, 45, 255, 341, 370
TseFI GTSAC 1 cut(s) 361
TseI GCWGC 1 cut(s) 341
Tsp45I GTSAC 1 cut(s) 361
TspDTI ATGAA 5 cut(s) 125, 240, 297, 304, 365
TspRI CASTG 5 cut(s) 28, 45, 255, 341, 370
Van91I CCANNNNNTGG 1 cut(s) 211
XapI RAATTY 1 cut(s) 291
XceI RCATGY 1 cut(s) 246
XcmI CCANNNNNNNNNTGG 1 cut(s) 341
Zsp2I ATGCAT 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.