Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003671

Physical Location & Seq

Genomic Coordinates Reverse (-)

51988670 .. 51990943

Gene Structure 2274 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1418100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGCTAAGGGAAGAGGCAGTGCAGTGGTTGTTACGGCGGTGCTCCTCCTCGCTTTGCTGCTCCACTGTGAGTGGGCGGATGCAAAAACCTACACCGTTGGGGATAGAGGTGGTTGGACCTTTAATGTTGCTGGGTGGCCTAGTGGAAAAACTTTTAGAGCCGGTGACATACTCGTTTTCAACTACGGGGCAGCTGCGCACAACGTGGTGGCTGTGAACAAAGCCGGGTACCAGACATGCAACACTCCAGGAGCTGCAAAGGTATATCAAACTGGAAGAGACCAGATCAGACTTGCTAAAGGACAGAACTTCTTCATCTGCAATTTCCCCGGTCACTGCCAATCTGGAATGAAAATTGCCATTACTGCTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0009856 GO:0009908 GO:0016020 GO:0022414 GO:0031012 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0044421 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0046658 GO:0048046 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0051704 GO:0061458 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

125

Amino Acids

13.14

Weight (kDa)

9.55

Isoelectric Point (pI)

7.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	39 - 117	1e-27	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02850
fragaria_vesca	FvH4_2g15050 FvH4_2g15050 FvH4_5g30150 FvH4_5g30170 FvH4_5g30180
malus_domestica	MD08G1224900.v1.1 MD15G1418000.v1.1 MD15G1418100.v1.1
prunus_persica	Prupe.1G562200_v2.0.a1 Prupe.1G562300_v2.0.a1 Prupe.8G016000_v2.0.a1
pyrus_communis	pycom05g00630 pycom15g37120 pycom15g37130
rosa_chinensis	RchiOBHm_Chr6g0277611 RchiOBHm_Chr7g0224441
rosa_laevigata	RLG00000001895 RLG00000013286
rosa_multiflora	Rmu_sc0001846.1_g000011 Rmu_ssc0000051.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234760 Rroxscaffold_7G00191160
rosa_rugosa	Rorug06G0110400 Rorug07G0223200
rosa_samantha	Rh6AG220600 Rh6BG224600 Rh6CG226800 Rh6DG217400 Rh7AG380000 Rh7BG359400 Rh7CG399500 Rh7DG369000
rosa_wichuraiana	Rw6G019340 Rw7G031170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	198
Acc65I	GGTACC	1 cut(s)	228
AccB1I	GGYRCC	1 cut(s)	228
AciI	CCGC	2 cut(s)	38, 77
AdeI	CACNNNGTG	1 cut(s)	205
AfaI	GTAC	1 cut(s)	230
AgsI	TTSAA	1 cut(s)	181
AjnI	CCWGG	1 cut(s)	247
AluBI	AGCT	2 cut(s)	194, 254
AluI	AGCT	2 cut(s)	194, 254
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	1 cut(s)	273
AlwNI	CAGNNNCTG	1 cut(s)	254
AoxI	GGCC	1 cut(s)	137
ApeKI	GCWGC	5 cut(s)	58, 191, 194, 254, 368
Asp700I	GAANNNNTTC	1 cut(s)	311
Asp718I	GGTACC	1 cut(s)	228
AspLEI	GCGC	1 cut(s)	199
AspS9I	GGNCC	1 cut(s)	117
AsuC2I	CCSGG	2 cut(s)	226, 330
AsuHPI	GGTGA	1 cut(s)	176
AvaII	GGWCC	1 cut(s)	117
BanI	GGYRCC	1 cut(s)	228
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	5 cut(s)	45, 181, 203, 241, 355
BceAI	ACGGC	1 cut(s)	51
BciT130I	CCWGG	1 cut(s)	249
BcnI	CCSGG	2 cut(s)	226, 330
BcoDI	GTCTC	1 cut(s)	273
BfaI	CTAG	2 cut(s)	141, 373
BisI	GCNGC	5 cut(s)	59, 192, 195, 255, 369
BlsI	GCNGC	5 cut(s)	60, 193, 196, 256, 370
Bme1390I	CCNGG	3 cut(s)	226, 249, 330
Bme18I	GGWCC	1 cut(s)	117
BmgT120I	GGNCC	1 cut(s)	117
BmiI	GGNNCC	1 cut(s)	230
BmrFI	CCNGG	3 cut(s)	226, 249, 330
BmsI	GCATC	1 cut(s)	70
BpmI	CTGGAG	1 cut(s)	231
Bpu10I	CCTNAGC	1 cut(s)	6
BpuMI	CCSGG	2 cut(s)	226, 330
BsaI	GGTCTC	1 cut(s)	273
BsaJI	CCNNGG	1 cut(s)	328
Bse118I	RCCGGY	1 cut(s)	161
Bse1I	ACTGG	1 cut(s)	277
BseBI	CCWGG	1 cut(s)	249
BseDI	CCNNGG	1 cut(s)	328
BseGI	GGATG	1 cut(s)	85
BseNI	ACTGG	1 cut(s)	277
BseRI	GAGGAG	2 cut(s)	35, 38
BseXI	GCAGC	5 cut(s)	45, 181, 203, 241, 355
BseYI	CCCAGC	1 cut(s)	131
BsgI	GTGCAG	1 cut(s)	42
BshFI	GGCC	1 cut(s)	139
BshNI	GGYRCC	1 cut(s)	228
BsiHKAI	GWGCWC	1 cut(s)	45
BsiSI	CCGG	3 cut(s)	162, 225, 330
BsmAI	GTCTC	1 cut(s)	273
BsnI	GGCC	1 cut(s)	139
Bso31I	GGTCTC	1 cut(s)	273
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp143I	GATC	1 cut(s)	285
BspACI	CCGC	2 cut(s)	38, 77
BspANI	GGCC	1 cut(s)	139
BspLI	GGNNCC	1 cut(s)	230
BspT107I	GGYRCC	1 cut(s)	228
BspTNI	GGTCTC	1 cut(s)	273
BsrFI	RCCGGY	1 cut(s)	161
BsrI	ACTGG	1 cut(s)	277
BssAI	RCCGGY	1 cut(s)	161
BssECI	CCNNGG	1 cut(s)	328
BssMI	GATC	1 cut(s)	285
Bst2UI	CCWGG	1 cut(s)	249
Bst4CI	ACNGT	2 cut(s)	68, 97
Bst6I	CTCTTC	2 cut(s)	7, 271
BstDEI	CTNAG	1 cut(s)	6
BstF5I	GGATG	1 cut(s)	85
BstHHI	GCGC	1 cut(s)	199
BstKTI	GATC	1 cut(s)	288
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	1 cut(s)	285
BstMWI	GCNNNNNNNGC	1 cut(s)	365
BstNI	CCWGG	1 cut(s)	249
BstNSI	RCATGY	1 cut(s)	240
BstSCI	CCNGG	3 cut(s)	224, 247, 328
BstV1I	GCAGC	5 cut(s)	45, 181, 203, 241, 355
BsuRI	GGCC	1 cut(s)	139
BtsCI	GGATG	1 cut(s)	85
BtsI	GCAGTG	3 cut(s)	25, 30, 334
BtsIMutI	CAGTG	4 cut(s)	25, 30, 64, 334
CaiI	CAGNNNCTG	1 cut(s)	254
CfoI	GCGC	1 cut(s)	199
Cfr10I	RCCGGY	1 cut(s)	161
Cfr13I	GGNCC	1 cut(s)	117
Csp6I	GTAC	1 cut(s)	229
CviAII	CATG	1 cut(s)	237
CviJI	RGCY	7 cut(s)	5, 139, 161, 194, 212, 224, 254
CviKI_1	RGCY	7 cut(s)	5, 139, 161, 194, 212, 224, 254
CviQI	GTAC	1 cut(s)	229
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	1 cut(s)	287
DpnII	GATC	1 cut(s)	285
DraIII	CACNNNGTG	1 cut(s)	205
Eam1104I	CTCTTC	2 cut(s)	7, 271
EarI	CTCTTC	2 cut(s)	7, 271
EciI	GGCGGA	1 cut(s)	92
Eco31I	GGTCTC	1 cut(s)	273
Eco47I	GGWCC	1 cut(s)	117
EcoRII	CCWGG	1 cut(s)	247
FaeI	CATG	1 cut(s)	240
FaiI	YATR	3 cut(s)	170, 238, 265
FatI	CATG	1 cut(s)	236
Fnu4HI	GCNGC	5 cut(s)	59, 192, 195, 255, 369
FokI	GGATG	1 cut(s)	92
Fsp4HI	GCNGC	5 cut(s)	59, 192, 195, 255, 369
FspBI	CTAG	2 cut(s)	141, 373
FspI	TGCGCA	1 cut(s)	198
GlaI	GCGC	1 cut(s)	198
GluI	GCNGC	5 cut(s)	59, 192, 195, 255, 369
GsaI	CCCAGC	1 cut(s)	135
GsuI	CTGGAG	1 cut(s)	231
HaeIII	GGCC	1 cut(s)	139
HapII	CCGG	3 cut(s)	162, 225, 330
HhaI	GCGC	1 cut(s)	199
Hin1II	CATG	1 cut(s)	240
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HpaII	CCGG	3 cut(s)	162, 225, 330
HphI	GGTGA	1 cut(s)	176
Hpy166II	GTNNAC	1 cut(s)	217
Hpy188I	TCNGA	1 cut(s)	290
Hpy188III	TCNNGA	1 cut(s)	345
Hpy8I	GTNNAC	1 cut(s)	217
HpyCH4III	ACNGT	2 cut(s)	68, 97
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	5 cut(s)	23, 83, 240, 257, 321
HpyF10VI	GCNNNNNNNGC	1 cut(s)	365
HpyF3I	CTNAG	1 cut(s)	6
HpySE526I	ACGT	1 cut(s)	204
Hsp92II	CATG	1 cut(s)	240
HspAI	GCGC	1 cut(s)	197
KpnI	GGTACC	1 cut(s)	232
Kzo9I	GATC	1 cut(s)	285
LmnI	GCTCC	3 cut(s)	48, 66, 251
Lsp1109I	GCAGC	5 cut(s)	45, 181, 203, 241, 355
LweI	GCATC	1 cut(s)	70
MaeI	CTAG	2 cut(s)	141, 373
MaeII	ACGT	1 cut(s)	204
MaeIII	GTNAC	3 cut(s)	31, 164, 332
MalI	GATC	1 cut(s)	287
MboI	GATC	1 cut(s)	285
MboII	GAAGA	3 cut(s)	24, 288, 304
MhlI	GDGCHC	1 cut(s)	45
MluCI	AATT	2 cut(s)	322, 354
MmeI	TCCRAC	1 cut(s)	95
MnlI	CCTC	4 cut(s)	8, 56, 59, 101
MroXI	GAANNNNTTC	1 cut(s)	311
MseI	TTAA	1 cut(s)	123
MspA1I	CMGCKG	1 cut(s)	194
MspI	CCGG	3 cut(s)	162, 225, 330
MspR9I	CCNGG	3 cut(s)	226, 249, 330
MvaI	CCWGG	1 cut(s)	249
MwoI	GCNNNNNNNGC	1 cut(s)	365
NciI	CCSGG	2 cut(s)	226, 330
NdeII	GATC	1 cut(s)	285
NlaIII	CATG	1 cut(s)	240
NlaIV	GGNNCC	1 cut(s)	230
NmuCI	GTSAC	2 cut(s)	164, 332
NsbI	TGCGCA	1 cut(s)	198
NspI	RCATGY	1 cut(s)	240
PdmI	GAANNNNTTC	1 cut(s)	311
PfoI	TCCNGGA	1 cut(s)	247
PkrI	GCNGC	5 cut(s)	60, 193, 196, 256, 370
Psp6I	CCWGG	1 cut(s)	247
PspFI	CCCAGC	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	247
PspN4I	GGNNCC	1 cut(s)	230
PspPI	GGNCC	1 cut(s)	117
PstNI	CAGNNNCTG	1 cut(s)	254
PvuII	CAGCTG	1 cut(s)	194
RsaI	GTAC	1 cut(s)	230
RsaNI	GTAC	1 cut(s)	229
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	5 cut(s)	59, 192, 195, 255, 369
Sau3AI	GATC	1 cut(s)	285
Sau96I	GGNCC	1 cut(s)	117
ScrFI	CCNGG	3 cut(s)	226, 249, 330
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	7 cut(s)	92, 112, 122, 196, 207, 256, 264
SfaNI	GCATC	1 cut(s)	70
SinI	GGWCC	1 cut(s)	117
Sse9I	AATT	2 cut(s)	322, 354
SsiI	CCGC	2 cut(s)	38, 77
SspMI	CTAG	2 cut(s)	141, 373
StyD4I	CCNGG	3 cut(s)	224, 247, 328
TaaI	ACNGT	2 cut(s)	68, 97
TaiI	ACGT	1 cut(s)	207
TasI	AATT	2 cut(s)	322, 354
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TscAI	CASTG	4 cut(s)	25, 30, 71, 341
TseFI	GTSAC	2 cut(s)	164, 332
TseI	GCWGC	5 cut(s)	58, 191, 194, 254, 368
Tsp45I	GTSAC	2 cut(s)	164, 332
TspDTI	ATGAA	2 cut(s)	304, 365
TspRI	CASTG	4 cut(s)	25, 30, 71, 341
VpaK11BI	GGWCC	1 cut(s)	117
XceI	RCATGY	1 cut(s)	240
XmnI	GAANNNNTTC	1 cut(s)	311
XspI	CTAG	2 cut(s)	141, 373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.