Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003671

Physical Location & Seq

Genomic Coordinates Reverse (-)

45940157 .. 45941547

Gene Structure 1391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G562300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGGTCAGGGTAGAGGCAGTGCAGGGGTTGGTGTGGTTTTGGTGATGTGCCTGAGTTTGCTGCTGCTCCAATGTGAATGGGCTGAAGCCAGAAGCTACACTGTTGGGGATGCAGGTGGTTGGACGTTTAACGTTGCTGGGTGGCCTAAGGGGAAGTCATTTAGAGCCGGTGACGTGCTTGTTTTCAACTACGCGTCTTCTGCTCACAATGTGGTTGCTGTGAACAAGGCTGGGTATCAGACATGTAGCTCTCCAAGAGCTGCCAAAGTCTTTCAGACTGGGAAAGATCAGATCAAGCTTGCTAAAGGACAGAACTTCTTCATTTGCAATTTCCCAGGCCACTGCCAATCTGGCATGAAAATTGCCATCACTGCAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0009856 GO:0009908 GO:0016020 GO:0022414 GO:0031012 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0044421 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0046658 GO:0048046 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0051704 GO:0061458 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

127

Amino Acids

13.29

Weight (kDa)

9.43

Isoelectric Point (pI)

20.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02850
fragaria_vesca	FvH4_2g15050 FvH4_2g15050 FvH4_5g30150 FvH4_5g30170 FvH4_5g30180
malus_domestica	MD08G1224900.v1.1 MD15G1418000.v1.1 MD15G1418100.v1.1
prunus_persica	Prupe.1G562200_v2.0.a1 Prupe.1G562300_v2.0.a1 Prupe.8G016000_v2.0.a1
pyrus_communis	pycom05g00630 pycom15g37120 pycom15g37130
rosa_chinensis	RchiOBHm_Chr6g0277611 RchiOBHm_Chr7g0224441
rosa_laevigata	RLG00000001895 RLG00000013286
rosa_multiflora	Rmu_sc0001846.1_g000011 Rmu_ssc0000051.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234760 Rroxscaffold_7G00191160
rosa_rugosa	Rorug06G0110400 Rorug07G0223200
rosa_samantha	Rh6AG220600 Rh6BG224600 Rh6CG226800 Rh6DG217400 Rh7AG380000 Rh7BG359400 Rh7CG399500 Rh7DG369000
rosa_wichuraiana	Rw6G019340 Rw7G031170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	104
Acc36I	ACCTGC	1 cut(s)	104
AccII	CGCG	1 cut(s)	194
AclI	AACGTT	1 cut(s)	132
AcuI	CTGAAG	1 cut(s)	105
AdeI	CACNNNGTG	1 cut(s)	211
AflIII	ACRYGT	2 cut(s)	192, 242
AgsI	TTSAA	1 cut(s)	187
AjiI	CACGTC	1 cut(s)	175
AjnI	CCWGG	1 cut(s)	334
AluBI	AGCT	4 cut(s)	96, 249, 260, 298
AluI	AGCT	4 cut(s)	96, 249, 260, 298
AoxI	GGCC	2 cut(s)	143, 337
ApeKI	GCWGC	4 cut(s)	61, 64, 260, 374
Asp700I	GAANNNNTTC	1 cut(s)	317
AsuHPI	GGTGA	2 cut(s)	55, 182
AxyI	CCTNAGG	1 cut(s)	147
BbsI	GAAGAC	1 cut(s)	189
BbvI	GCAGC	3 cut(s)	48, 51, 247
BccI	CCATC	1 cut(s)	374
BciT130I	CCWGG	1 cut(s)	336
BfaI	CTAG	1 cut(s)	379
BfmI	CTRYAG	1 cut(s)	372
BfuAI	ACCTGC	1 cut(s)	104
BglI	GCCNNNNNGGC	1 cut(s)	351
BisI	GCNGC	4 cut(s)	62, 65, 261, 375
BlsI	GCNGC	4 cut(s)	63, 66, 262, 376
Bme1390I	CCNGG	1 cut(s)	336
BmgBI	CACGTC	1 cut(s)	175
BmrFI	CCNGG	1 cut(s)	336
BmrI	ACTGGG	1 cut(s)	288
BmsI	GCATC	1 cut(s)	100
BmuI	ACTGGG	1 cut(s)	288
BpiI	GAAGAC	1 cut(s)	189
BsaJI	CCNNGG	1 cut(s)	334
Bse118I	RCCGGY	1 cut(s)	167
Bse1I	ACTGG	1 cut(s)	283
Bse21I	CCTNAGG	1 cut(s)	147
BseBI	CCWGG	1 cut(s)	336
BseDI	CCNNGG	1 cut(s)	334
BseGI	GGATG	1 cut(s)	115
BseMII	CTCAG	1 cut(s)	44
BseNI	ACTGG	1 cut(s)	283
BseXI	GCAGC	3 cut(s)	48, 51, 247
BseYI	CCCAGC	2 cut(s)	137, 230
BsgI	GTGCAG	1 cut(s)	42
Bsh1236I	CGCG	1 cut(s)	194
BshFI	GGCC	2 cut(s)	145, 339
BsiSI	CCGG	1 cut(s)	168
BsnI	GGCC	2 cut(s)	145, 339
Bsp143I	GATC	2 cut(s)	286, 291
BspANI	GGCC	2 cut(s)	145, 339
BspCNI	CTCAG	1 cut(s)	45
BspFNI	CGCG	1 cut(s)	194
BspMAI	CTGCAG	1 cut(s)	376
BspMI	ACCTGC	1 cut(s)	104
BsrFI	RCCGGY	1 cut(s)	167
BsrI	ACTGG	1 cut(s)	283
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	1 cut(s)	334
BssMI	GATC	2 cut(s)	286, 291
Bst2UI	CCWGG	1 cut(s)	336
Bst4CI	ACNGT	1 cut(s)	103
BstC8I	GCNNGC	1 cut(s)	300
BstDEI	CTNAG	2 cut(s)	53, 147
BstF5I	GGATG	1 cut(s)	115
BstFNI	CGCG	1 cut(s)	194
BstKTI	GATC	2 cut(s)	289, 294
BstMBI	GATC	2 cut(s)	286, 291
BstMWI	GCNNNNNNNGC	3 cut(s)	200, 351, 371
BstNI	CCWGG	1 cut(s)	336
BstNSI	RCATGY	1 cut(s)	246
BstSCI	CCNGG	1 cut(s)	334
BstSFI	CTRYAG	1 cut(s)	372
BstUI	CGCG	1 cut(s)	194
BstV1I	GCAGC	3 cut(s)	48, 51, 247
BstV2I	GAAGAC	1 cut(s)	189
Bsu36I	CCTNAGG	1 cut(s)	147
BsuRI	GGCC	2 cut(s)	145, 339
BtrI	CACGTC	1 cut(s)	175
BtsCI	GGATG	1 cut(s)	115
BtsI	GCAGTG	3 cut(s)	25, 340, 369
BtsIMutI	CAGTG	4 cut(s)	25, 99, 340, 369
BveI	ACCTGC	1 cut(s)	104
Cac8I	GCNNGC	1 cut(s)	300
Cfr10I	RCCGGY	1 cut(s)	167
CseI	GACGC	1 cut(s)	183
CviAII	CATG	2 cut(s)	243, 355
DdeI	CTNAG	2 cut(s)	53, 147
DpnI	GATC	2 cut(s)	288, 293
DpnII	GATC	2 cut(s)	286, 291
DraIII	CACNNNGTG	1 cut(s)	211
Eco57I	CTGAAG	1 cut(s)	105
Eco81I	CCTNAGG	1 cut(s)	147
EcoRII	CCWGG	1 cut(s)	334
FaeI	CATG	2 cut(s)	246, 358
FaiI	YATR	2 cut(s)	244, 356
FatI	CATG	2 cut(s)	242, 354
Fnu4HI	GCNGC	4 cut(s)	62, 65, 261, 375
FokI	GGATG	1 cut(s)	122
Fsp4HI	GCNGC	4 cut(s)	62, 65, 261, 375
FspBI	CTAG	1 cut(s)	379
GluI	GCNGC	4 cut(s)	62, 65, 261, 375
GsaI	CCCAGC	2 cut(s)	141, 234
HaeIII	GGCC	2 cut(s)	145, 339
HapII	CCGG	1 cut(s)	168
HgaI	GACGC	1 cut(s)	183
Hin1II	CATG	2 cut(s)	246, 358
HindIII	AAGCTT	1 cut(s)	296
HpaII	CCGG	1 cut(s)	168
HphI	GGTGA	2 cut(s)	55, 182
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	3 cut(s)	240, 276, 291
Hpy8I	GTNNAC	1 cut(s)	223
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4IV	ACGT	3 cut(s)	125, 132, 174
HpyCH4V	TGCA	4 cut(s)	23, 113, 327, 374
HpyF10VI	GCNNNNNNNGC	3 cut(s)	200, 351, 371
HpyF3I	CTNAG	2 cut(s)	53, 147
HpySE526I	ACGT	3 cut(s)	125, 132, 174
Hsp92II	CATG	2 cut(s)	246, 358
Kzo9I	GATC	2 cut(s)	286, 291
LmnI	GCTCC	1 cut(s)	72
Lsp1109I	GCAGC	3 cut(s)	48, 51, 247
LweI	GCATC	1 cut(s)	100
MaeI	CTAG	1 cut(s)	379
MaeII	ACGT	3 cut(s)	125, 132, 174
MaeIII	GTNAC	1 cut(s)	170
MalI	GATC	2 cut(s)	288, 293
MboI	GATC	2 cut(s)	286, 291
MboII	GAAGA	2 cut(s)	189, 310
MluCI	AATT	2 cut(s)	328, 360
MluI	ACGCGT	1 cut(s)	192
MmeI	TCCRAC	1 cut(s)	101
MnlI	CCTC	1 cut(s)	8
MroXI	GAANNNNTTC	1 cut(s)	317
MseI	TTAA	1 cut(s)	129
MspI	CCGG	1 cut(s)	168
MspR9I	CCNGG	1 cut(s)	336
MvaI	CCWGG	1 cut(s)	336
MvnI	CGCG	1 cut(s)	194
MwoI	GCNNNNNNNGC	3 cut(s)	200, 351, 371
NdeII	GATC	2 cut(s)	286, 291
NlaIII	CATG	2 cut(s)	246, 358
NmuCI	GTSAC	1 cut(s)	170
NspI	RCATGY	1 cut(s)	246
PaqCI	CACCTGC	1 cut(s)	104
PciI	ACATGT	1 cut(s)	242
PdmI	GAANNNNTTC	1 cut(s)	317
PkrI	GCNGC	4 cut(s)	63, 66, 262, 376
PscI	ACATGT	1 cut(s)	242
Psp1406I	AACGTT	1 cut(s)	132
Psp6I	CCWGG	1 cut(s)	334
PspFI	CCCAGC	2 cut(s)	137, 230
PspGI	CCWGG	1 cut(s)	334
PstI	CTGCAG	1 cut(s)	376
SaqAI	TTAA	1 cut(s)	129
SatI	GCNGC	4 cut(s)	62, 65, 261, 375
Sau3AI	GATC	2 cut(s)	286, 291
ScrFI	CCNGG	1 cut(s)	336
SetI	ASST	8 cut(s)	98, 118, 128, 135, 177, 251, 262, 300
SfaNI	GCATC	1 cut(s)	100
SfcI	CTRYAG	1 cut(s)	372
Sse9I	AATT	2 cut(s)	328, 360
SspMI	CTAG	1 cut(s)	379
StyD4I	CCNGG	1 cut(s)	334
TaaI	ACNGT	1 cut(s)	103
TaiI	ACGT	3 cut(s)	128, 135, 177
TasI	AATT	2 cut(s)	328, 360
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TscAI	CASTG	4 cut(s)	25, 106, 347, 376
TseFI	GTSAC	1 cut(s)	170
TseI	GCWGC	4 cut(s)	61, 64, 260, 374
Tsp45I	GTSAC	1 cut(s)	170
TspDTI	ATGAA	2 cut(s)	310, 371
TspRI	CASTG	4 cut(s)	25, 106, 347, 376
XceI	RCATGY	1 cut(s)	246
XcmI	CCANNNNNNNNNTGG	1 cut(s)	347
XmnI	GAANNNNTTC	1 cut(s)	317
XspI	CTAG	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.