Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003671

Physical Location & Seq

Genomic Coordinates Reverse (-)

21087803 .. 21088795

Gene Structure 993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g30180.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCTCAAGCTAGAGGCGGTGCAAGAATTAATGTGATGTTGTTAGTGTTTTGTGTGTTGATTCACTACAAGATTGCTAGTGCGACTACCTACATTGTTGGAGATAAAGCAGGATGGACATTTGGAATACAAAGTTGGCCTACAGGCAAGCAATTCCATGCTGGTGACATTTTAGTTTTTAAGTATAACATGAATGTGCATTCTGTAATTGTGACTGACGAAAATGGATTCAAGACATGCAATACTGTAACAGGTCAAAAATTTGTATCAGGTAATGATCAGATCAAACTTAGAATGGGACAAAACTATTTCATTTGCGGTACTCCTGGGCACTGTGTTGGTGGAATGAAAATGACAATATCTGCTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0009856 GO:0009908 GO:0016020 GO:0022414 GO:0031012 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0044421 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0046658 GO:0048046 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0051704 GO:0061458 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

124

Amino Acids

13.4

Weight (kDa)

9.36

Isoelectric Point (pI)

10.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	39 - 116	2e-23	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02850
fragaria_vesca	FvH4_2g15050 FvH4_2g15050 FvH4_5g30150 FvH4_5g30170 FvH4_5g30180
malus_domestica	MD08G1224900.v1.1 MD15G1418000.v1.1 MD15G1418100.v1.1
prunus_persica	Prupe.1G562200_v2.0.a1 Prupe.1G562300_v2.0.a1 Prupe.8G016000_v2.0.a1
pyrus_communis	pycom05g00630 pycom15g37120 pycom15g37130
rosa_chinensis	RchiOBHm_Chr6g0277611 RchiOBHm_Chr7g0224441
rosa_laevigata	RLG00000001895 RLG00000013286
rosa_multiflora	Rmu_sc0001846.1_g000011 Rmu_ssc0000051.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234760 Rroxscaffold_7G00191160
rosa_rugosa	Rorug06G0110400 Rorug07G0223200
rosa_samantha	Rh6AG220600 Rh6BG224600 Rh6CG226800 Rh6DG217400 Rh7AG380000 Rh7BG359400 Rh7CG399500 Rh7DG369000
rosa_wichuraiana	Rw6G019340 Rw7G031170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	18, 318
AcsI	RAATTY	1 cut(s)	260
AfaI	GTAC	1 cut(s)	322
AgsI	TTSAA	1 cut(s)	232
AjnI	CCWGG	1 cut(s)	325
AjuI	GAANNNNNNNTTGG	2 cut(s)	118, 150
AluBI	AGCT	1 cut(s)	11
AluI	AGCT	1 cut(s)	11
AoxI	GGCC	1 cut(s)	137
ApeKI	GCWGC	1 cut(s)	365
ApoI	RAATTY	1 cut(s)	260
AseI	ATTAAT	1 cut(s)	30
AsuHPI	GGTGA	1 cut(s)	176
BaeGI	GKGCMC	1 cut(s)	333
BbvI	GCAGC	1 cut(s)	352
BccI	CCATC	1 cut(s)	108
BciT130I	CCWGG	1 cut(s)	327
BclI	TGATCA	1 cut(s)	277
BfaI	CTAG	2 cut(s)	12, 78
BfmI	CTRYAG	1 cut(s)	141
BisI	GCNGC	1 cut(s)	366
BlsI	GCNGC	1 cut(s)	367
Bme1390I	CCNGG	1 cut(s)	327
BmrFI	CCNGG	1 cut(s)	327
BsaJI	CCNNGG	1 cut(s)	326
BseBI	CCWGG	1 cut(s)	327
BseDI	CCNNGG	1 cut(s)	326
BseGI	GGATG	1 cut(s)	119
BseSI	GKGCMC	1 cut(s)	333
BseXI	GCAGC	1 cut(s)	352
BshFI	GGCC	1 cut(s)	139
BslFI	GGGAC	1 cut(s)	312
BsmFI	GGGAC	1 cut(s)	312
BsmI	GAATGC	1 cut(s)	199
BsnI	GGCC	1 cut(s)	139
Bsp1286I	GDGCHC	1 cut(s)	333
Bsp143I	GATC	2 cut(s)	277, 282
BspACI	CCGC	2 cut(s)	18, 318
BspANI	GGCC	1 cut(s)	139
BssECI	CCNNGG	1 cut(s)	326
BssMI	GATC	2 cut(s)	277, 282
Bst2UI	CCWGG	1 cut(s)	327
Bst4CI	ACNGT	2 cut(s)	247, 335
BstC8I	GCNNGC	1 cut(s)	149
BstDEI	CTNAG	1 cut(s)	290
BstF5I	GGATG	1 cut(s)	119
BstKTI	GATC	2 cut(s)	280, 285
BstMBI	GATC	2 cut(s)	277, 282
BstNI	CCWGG	1 cut(s)	327
BstNSI	RCATGY	1 cut(s)	240
BstSCI	CCNGG	1 cut(s)	325
BstSFI	CTRYAG	1 cut(s)	141
BstSLI	GKGCMC	1 cut(s)	333
BstV1I	GCAGC	1 cut(s)	352
BsuRI	GGCC	1 cut(s)	139
BtsCI	GGATG	1 cut(s)	119
BtsIMutI	CAGTG	1 cut(s)	331
Cac8I	GCNNGC	1 cut(s)	149
Csp6I	GTAC	1 cut(s)	321
CviAII	CATG	3 cut(s)	158, 190, 237
CviJI	RGCY	3 cut(s)	5, 11, 139
CviKI_1	RGCY	3 cut(s)	5, 11, 139
CviQI	GTAC	1 cut(s)	321
DdeI	CTNAG	1 cut(s)	290
DpnI	GATC	2 cut(s)	279, 284
DpnII	GATC	2 cut(s)	277, 282
EcoRII	CCWGG	1 cut(s)	325
FaeI	CATG	3 cut(s)	161, 193, 240
FaiI	YATR	5 cut(s)	159, 186, 191, 238, 370
FaqI	GGGAC	1 cut(s)	312
FatI	CATG	3 cut(s)	157, 189, 236
FbaI	TGATCA	1 cut(s)	277
Fnu4HI	GCNGC	1 cut(s)	366
FokI	GGATG	1 cut(s)	126
Fsp4HI	GCNGC	1 cut(s)	366
FspBI	CTAG	2 cut(s)	12, 78
GluI	GCNGC	1 cut(s)	366
HaeIII	GGCC	1 cut(s)	139
Hin1II	CATG	3 cut(s)	161, 193, 240
HinfI	GANTC	2 cut(s)	61, 228
HphI	GGTGA	1 cut(s)	176
Hpy188I	TCNGA	1 cut(s)	282
Hpy188III	TCNNGA	1 cut(s)	232
HpyCH4III	ACNGT	2 cut(s)	247, 335
HpyCH4V	TGCA	4 cut(s)	23, 199, 240, 368
HpyF3I	CTNAG	1 cut(s)	290
Hsp92II	CATG	3 cut(s)	161, 193, 240
Ksp22I	TGATCA	1 cut(s)	277
Kzo9I	GATC	2 cut(s)	277, 282
LpnPI	CCDG	7 cut(s)	96, 129, 147, 237, 255, 312, 339
Lsp1109I	GCAGC	1 cut(s)	352
MaeI	CTAG	2 cut(s)	12, 78
MaeIII	GTNAC	3 cut(s)	164, 211, 247
MalI	GATC	2 cut(s)	279, 284
MboI	GATC	2 cut(s)	277, 282
MhlI	GDGCHC	1 cut(s)	333
MluCI	AATT	4 cut(s)	27, 152, 207, 260
MmeI	TCCRAC	1 cut(s)	79
MnlI	CCTC	1 cut(s)	8
MseI	TTAA	2 cut(s)	30, 180
MslI	CAYNNNNRTG	2 cut(s)	162, 194
MspR9I	CCNGG	1 cut(s)	327
Mva1269I	GAATGC	1 cut(s)	199
MvaI	CCWGG	1 cut(s)	327
NdeII	GATC	2 cut(s)	277, 282
NlaIII	CATG	3 cut(s)	161, 193, 240
NmuCI	GTSAC	2 cut(s)	164, 211
NspI	RCATGY	1 cut(s)	240
PctI	GAATGC	1 cut(s)	199
PfeI	GAWTC	2 cut(s)	61, 228
PkrI	GCNGC	1 cut(s)	367
PshBI	ATTAAT	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	325
PspGI	CCWGG	1 cut(s)	325
RsaI	GTAC	1 cut(s)	322
RsaNI	GTAC	1 cut(s)	321
RseI	CAYNNNNRTG	2 cut(s)	162, 194
SaqAI	TTAA	2 cut(s)	30, 180
SatI	GCNGC	1 cut(s)	366
Sau3AI	GATC	2 cut(s)	277, 282
ScrFI	CCNGG	1 cut(s)	327
SduI	GDGCHC	1 cut(s)	333
SetI	ASST	4 cut(s)	13, 92, 256, 274
SfcI	CTRYAG	1 cut(s)	141
SmiMI	CAYNNNNRTG	2 cut(s)	162, 194
SmlI	CTYRAG	1 cut(s)	6
SmoI	CTYRAG	1 cut(s)	6
Sse9I	AATT	4 cut(s)	27, 152, 207, 260
SsiI	CCGC	2 cut(s)	18, 318
SspMI	CTAG	2 cut(s)	12, 78
StyD4I	CCNGG	1 cut(s)	325
TaaI	ACNGT	2 cut(s)	247, 335
TasI	AATT	4 cut(s)	27, 152, 207, 260
TfiI	GAWTC	2 cut(s)	61, 228
Tru1I	TTAA	2 cut(s)	30, 180
Tru9I	TTAA	2 cut(s)	30, 180
TscAI	CASTG	1 cut(s)	338
TseFI	GTSAC	2 cut(s)	164, 211
TseI	GCWGC	1 cut(s)	365
Tsp45I	GTSAC	2 cut(s)	164, 211
TspDTI	ATGAA	3 cut(s)	206, 301, 362
TspRI	CASTG	1 cut(s)	338
VspI	ATTAAT	1 cut(s)	30
XapI	RAATTY	1 cut(s)	260
XceI	RCATGY	1 cut(s)	240
XspI	CTAG	2 cut(s)	12, 78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.