Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003671

Physical Location & Seq

Genomic Coordinates Forward (+)

13216896 .. 13218958

Gene Structure 2063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g15050.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGAACTCTCAGGGAAGAGGCAGTGCCAGATTTACTGTTGTGCAGGTGGTTGCAGTTCTACTATGCCTCATGGCAGTTCAGTATGTTGATGCAGCTACCTACACAGTTGGAGACTCCGGTGGATGGAGCTTCAATACTGGTAAATGGCCCAACGGAAAGCAATTCCGAGCCGGTGATGTTCTAATTTTCAACTATGACTCTACACTTCACAATGTGGTAGCTGTGGGGAGGGGTGGTTATAGCAGCTGCACAACCCCTAGAGGTGCCAAGGTTCTGACATCGGGGAATGATCGGGTGAAGCTCGCCAAAGGACAGAACTACTTCATTTGCAACTTTCCAGGCCACTGCGAGTCCGGGATGAAGGTTGCCATCAATGCTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0009856 GO:0009908 GO:0016020 GO:0022414 GO:0031012 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0044421 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0046658 GO:0048046 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0051704 GO:0061458 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

128

Amino Acids

13.54

Weight (kDa)

9.39

Isoelectric Point (pI)

17.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	42 - 120	2.3e-26	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02850
fragaria_vesca	FvH4_2g15050 FvH4_2g15050 FvH4_5g30150 FvH4_5g30170 FvH4_5g30180
malus_domestica	MD08G1224900.v1.1 MD15G1418000.v1.1 MD15G1418100.v1.1
prunus_persica	Prupe.1G562200_v2.0.a1 Prupe.1G562300_v2.0.a1 Prupe.8G016000_v2.0.a1
pyrus_communis	pycom05g00630 pycom15g37120 pycom15g37130
rosa_chinensis	RchiOBHm_Chr6g0277611 RchiOBHm_Chr7g0224441
rosa_laevigata	RLG00000001895 RLG00000013286
rosa_multiflora	Rmu_sc0001846.1_g000011 Rmu_ssc0000051.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234760 Rroxscaffold_7G00191160
rosa_rugosa	Rorug06G0110400 Rorug07G0223200
rosa_samantha	Rh6AG220600 Rh6BG224600 Rh6CG226800 Rh6DG217400 Rh7AG380000 Rh7BG359400 Rh7CG399500 Rh7DG369000
rosa_wichuraiana	Rw6G019340 Rw7G031170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	34
Acc36I	ACCTGC	1 cut(s)	34
AccB1I	GGYRCC	1 cut(s)	263
AdeI	CACNNNGTG	1 cut(s)	214
AfiI	CCNNNNNNNGG	1 cut(s)	123
AgsI	TTSAA	2 cut(s)	133, 190
AjnI	CCWGG	1 cut(s)	337
AluBI	AGCT	5 cut(s)	95, 129, 221, 246, 301
AluI	AGCT	5 cut(s)	95, 129, 221, 246, 301
Alw26I	GTCTC	1 cut(s)	105
AoxI	GGCC	2 cut(s)	146, 340
ApeKI	GCWGC	3 cut(s)	92, 243, 246
Asp700I	GAANNNNTTC	1 cut(s)	320
AspS9I	GGNCC	1 cut(s)	147
AsuC2I	CCSGG	1 cut(s)	355
AsuHPI	GGTGA	2 cut(s)	185, 307
BanI	GGYRCC	1 cut(s)	263
BbvI	GCAGC	3 cut(s)	104, 233, 255
BccI	CCATC	2 cut(s)	117, 377
BciT130I	CCWGG	1 cut(s)	339
BcnI	CCSGG	1 cut(s)	355
BcoDI	GTCTC	1 cut(s)	105
BfaI	CTAG	1 cut(s)	258
BfuAI	ACCTGC	1 cut(s)	34
BisI	GCNGC	3 cut(s)	93, 244, 247
BlsI	GCNGC	3 cut(s)	94, 245, 248
Bme1390I	CCNGG	2 cut(s)	339, 355
BmgT120I	GGNCC	1 cut(s)	147
BmiI	GGNNCC	1 cut(s)	265
BmrFI	CCNGG	2 cut(s)	339, 355
BmsI	GCATC	1 cut(s)	79
BpuMI	CCSGG	1 cut(s)	355
BsaJI	CCNNGG	1 cut(s)	267
BsaWI	WCCGGW	1 cut(s)	116
BsaXI	ACNNNNNCTCC	2 cut(s)	220, 250
Bsc4I	CCNNNNNNNGG	1 cut(s)	123
Bse118I	RCCGGY	1 cut(s)	170
Bse1I	ACTGG	1 cut(s)	142
BseBI	CCWGG	1 cut(s)	339
BseDI	CCNNGG	1 cut(s)	267
BseGI	GGATG	2 cut(s)	128, 363
BseLI	CCNNNNNNNGG	1 cut(s)	123
BseMII	CTCAG	1 cut(s)	23
BseNI	ACTGG	1 cut(s)	142
BseXI	GCAGC	3 cut(s)	104, 233, 255
BsgI	GTGCAG	2 cut(s)	62, 232
BshFI	GGCC	2 cut(s)	148, 342
BshNI	GGYRCC	1 cut(s)	263
BsiSI	CCGG	3 cut(s)	117, 171, 354
BslI	CCNNNNNNNGG	1 cut(s)	123
BsmAI	GTCTC	1 cut(s)	105
BsnI	GGCC	2 cut(s)	148, 342
Bsp143I	GATC	1 cut(s)	289
BspANI	GGCC	2 cut(s)	148, 342
BspCNI	CTCAG	1 cut(s)	22
BspLI	GGNNCC	1 cut(s)	265
BspMI	ACCTGC	1 cut(s)	34
BspT107I	GGYRCC	1 cut(s)	263
BsrFI	RCCGGY	1 cut(s)	170
BsrI	ACTGG	1 cut(s)	142
BssAI	RCCGGY	1 cut(s)	170
BssECI	CCNNGG	1 cut(s)	267
BssMI	GATC	1 cut(s)	289
BssT1I	CCWWGG	1 cut(s)	267
Bst2UI	CCWGG	1 cut(s)	339
Bst4CI	ACNGT	2 cut(s)	37, 106
Bst6I	CTCTTC	1 cut(s)	10
BstC8I	GCNNGC	1 cut(s)	303
BstDEI	CTNAG	1 cut(s)	9
BstF5I	GGATG	2 cut(s)	128, 363
BstKTI	GATC	1 cut(s)	292
BstMAI	GTCTC	1 cut(s)	105
BstMBI	GATC	1 cut(s)	289
BstMWI	GCNNNNNNNGC	1 cut(s)	374
BstNI	CCWGG	1 cut(s)	339
BstSCI	CCNGG	2 cut(s)	337, 353
BstV1I	GCAGC	3 cut(s)	104, 233, 255
BsuRI	GGCC	2 cut(s)	148, 342
BtsCI	GGATG	2 cut(s)	128, 363
BtsI	GCAGTG	2 cut(s)	28, 343
BtsIMutI	CAGTG	2 cut(s)	28, 343
BveI	ACCTGC	1 cut(s)	34
Cac8I	GCNNGC	1 cut(s)	303
Cfr10I	RCCGGY	1 cut(s)	170
Cfr13I	GGNCC	1 cut(s)	147
CviAII	CATG	1 cut(s)	70
CviJI	RGCY	8 cut(s)	95, 129, 148, 170, 221, 246, 301, 342
CviKI_1	RGCY	8 cut(s)	95, 129, 148, 170, 221, 246, 301, 342
DdeI	CTNAG	1 cut(s)	9
DpnI	GATC	1 cut(s)	291
DpnII	GATC	1 cut(s)	289
DraIII	CACNNNGTG	1 cut(s)	214
Eam1104I	CTCTTC	1 cut(s)	10
EarI	CTCTTC	1 cut(s)	10
Eco130I	CCWWGG	1 cut(s)	267
EcoRII	CCWGG	1 cut(s)	337
EcoT14I	CCWWGG	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	267
FaeI	CATG	1 cut(s)	73
FaiI	YATR	5 cut(s)	64, 71, 84, 195, 240
FatI	CATG	1 cut(s)	69
Fnu4HI	GCNGC	3 cut(s)	93, 244, 247
FokI	GGATG	2 cut(s)	135, 370
Fsp4HI	GCNGC	3 cut(s)	93, 244, 247
FspBI	CTAG	1 cut(s)	258
GluI	GCNGC	3 cut(s)	93, 244, 247
HaeIII	GGCC	2 cut(s)	148, 342
HapII	CCGG	3 cut(s)	117, 171, 354
Hin1II	CATG	1 cut(s)	73
HinfI	GANTC	3 cut(s)	113, 197, 350
HpaII	CCGG	3 cut(s)	117, 171, 354
HphI	GGTGA	2 cut(s)	185, 307
Hpy188I	TCNGA	2 cut(s)	167, 276
HpyAV	CCTTC	1 cut(s)	355
HpyCH4III	ACNGT	2 cut(s)	37, 106
HpyCH4V	TGCA	5 cut(s)	43, 53, 92, 249, 330
HpyF10VI	GCNNNNNNNGC	1 cut(s)	374
HpyF3I	CTNAG	1 cut(s)	9
Hsp92II	CATG	1 cut(s)	73
Kzo9I	GATC	1 cut(s)	289
LmnI	GCTCC	1 cut(s)	126
LpnPI	CCDG	8 cut(s)	29, 40, 123, 130, 184, 324, 351, 367
Lsp1109I	GCAGC	3 cut(s)	104, 233, 255
LweI	GCATC	1 cut(s)	79
MaeI	CTAG	1 cut(s)	258
MalI	GATC	1 cut(s)	291
MboI	GATC	1 cut(s)	289
MboII	GAAGA	1 cut(s)	27
MluCI	AATT	2 cut(s)	161, 183
MlyI	GAGTC	3 cut(s)	107, 191, 359
MmeI	TCCRAC	1 cut(s)	88
MnlI	CCTC	4 cut(s)	11, 77, 222, 254
MroXI	GAANNNNTTC	1 cut(s)	320
MspA1I	CMGCKG	1 cut(s)	246
MspI	CCGG	3 cut(s)	117, 171, 354
MspR9I	CCNGG	2 cut(s)	339, 355
MvaI	CCWGG	1 cut(s)	339
MwoI	GCNNNNNNNGC	1 cut(s)	374
NciI	CCSGG	1 cut(s)	355
NdeII	GATC	1 cut(s)	289
NlaIII	CATG	1 cut(s)	73
NlaIV	GGNNCC	1 cut(s)	265
PaqCI	CACCTGC	1 cut(s)	34
PdmI	GAANNNNTTC	1 cut(s)	320
PfoI	TCCNGGA	1 cut(s)	353
PkrI	GCNGC	3 cut(s)	94, 245, 248
PleI	GAGTC	3 cut(s)	107, 191, 358
PpsI	GAGTC	3 cut(s)	107, 191, 358
Psp6I	CCWGG	1 cut(s)	337
PspGI	CCWGG	1 cut(s)	337
PspN4I	GGNNCC	1 cut(s)	265
PspPI	GGNCC	1 cut(s)	147
PvuII	CAGCTG	1 cut(s)	246
SatI	GCNGC	3 cut(s)	93, 244, 247
Sau3AI	GATC	1 cut(s)	289
Sau96I	GGNCC	1 cut(s)	147
SchI	GAGTC	3 cut(s)	107, 191, 359
ScrFI	CCNGG	2 cut(s)	339, 355
SfaNI	GCATC	1 cut(s)	79
Sse9I	AATT	2 cut(s)	161, 183
SspMI	CTAG	1 cut(s)	258
StyD4I	CCNGG	2 cut(s)	337, 353
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	2 cut(s)	37, 106
TasI	AATT	2 cut(s)	161, 183
TscAI	CASTG	2 cut(s)	28, 350
TseI	GCWGC	3 cut(s)	92, 243, 246
TspDTI	ATGAA	3 cut(s)	17, 313, 374
TspGWI	ACGGA	1 cut(s)	168
TspRI	CASTG	2 cut(s)	28, 350
XmnI	GAANNNNTTC	1 cut(s)	320
XspI	CTAG	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.