Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003671

Physical Location & Seq

Genomic Coordinates Forward (+)

38045925 .. 38046358

Gene Structure 434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG226800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGCGGTTCAGTTGGAATATGTTAATGCAGCTACCTATACAGTTGGAGACTCCGGTGGGTGGAGCTTCAAGACTGATAAATGGCCCAACGGCAAGCAATTTAGAGCCGGTGATGTTCTAATTTTCAACTATGACTCTACAATTCACAATGTGGTAGCTGTGGGGAAGGGTGGTTATAGCAGCTGCACAACTCCAAGAGGTGCCAAGGTGCTTACATCGGGGAAGGATCGGTTGAAGCTCGCGAGAGGACAGAACTACTTCATATGCAGCTTTCCAGGCCACTGCGAGTCCGGGATGAAGGTAGCCATCAATGCTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0009856 GO:0009908 GO:0016020 GO:0022414 GO:0031012 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0044421 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0046658 GO:0048046 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0051704 GO:0061458 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

106

Amino Acids

11.43

Weight (kDa)

9.27

Isoelectric Point (pI)

19.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	22 - 99	4.6e-26	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02850
fragaria_vesca	FvH4_2g15050 FvH4_2g15050 FvH4_5g30150 FvH4_5g30170 FvH4_5g30180
malus_domestica	MD08G1224900.v1.1 MD15G1418000.v1.1 MD15G1418100.v1.1
prunus_persica	Prupe.1G562200_v2.0.a1 Prupe.1G562300_v2.0.a1 Prupe.8G016000_v2.0.a1
pyrus_communis	pycom05g00630 pycom15g37120 pycom15g37130
rosa_chinensis	RchiOBHm_Chr6g0277611 RchiOBHm_Chr7g0224441
rosa_laevigata	RLG00000001895 RLG00000013286
rosa_multiflora	Rmu_sc0001846.1_g000011 Rmu_ssc0000051.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234760 Rroxscaffold_7G00191160
rosa_rugosa	Rorug06G0110400 Rorug07G0223200
rosa_samantha	Rh6AG220600 Rh6BG224600 Rh6CG226800 Rh6DG217400 Rh7AG380000 Rh7BG359400 Rh7CG399500 Rh7DG369000
rosa_wichuraiana	Rw6G019340 Rw7G031170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	200
AccII	CGCG	1 cut(s)	242
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	1 cut(s)	234
AdeI	CACNNNGTG	1 cut(s)	151
AfiI	CCNNNNNNNGG	1 cut(s)	60
AgsI	TTSAA	3 cut(s)	70, 127, 235
AjnI	CCWGG	1 cut(s)	274
AluBI	AGCT	6 cut(s)	32, 66, 158, 183, 238, 270
AluI	AGCT	6 cut(s)	32, 66, 158, 183, 238, 270
Alw26I	GTCTC	1 cut(s)	42
AlwI	GGATC	1 cut(s)	234
AoxI	GGCC	2 cut(s)	83, 277
ApeKI	GCWGC	4 cut(s)	29, 180, 183, 267
Asp700I	GAANNNNTTC	1 cut(s)	257
AspS9I	GGNCC	1 cut(s)	84
AsuC2I	CCSGG	1 cut(s)	292
AsuHPI	GGTGA	1 cut(s)	122
BanI	GGYRCC	1 cut(s)	200
BbvI	GCAGC	4 cut(s)	41, 170, 192, 279
BccI	CCATC	1 cut(s)	314
BceAI	ACGGC	1 cut(s)	106
BciT130I	CCWGG	1 cut(s)	276
BcnI	CCSGG	1 cut(s)	292
BcoDI	GTCTC	1 cut(s)	42
BisI	GCNGC	4 cut(s)	30, 181, 184, 268
BlsI	GCNGC	4 cut(s)	31, 182, 185, 269
Bme1390I	CCNGG	2 cut(s)	276, 292
BmgT120I	GGNCC	1 cut(s)	84
BmiI	GGNNCC	1 cut(s)	202
BmrFI	CCNGG	2 cut(s)	276, 292
BpuMI	CCSGG	1 cut(s)	292
BsaJI	CCNNGG	1 cut(s)	204
BsaWI	WCCGGW	1 cut(s)	53
Bsc4I	CCNNNNNNNGG	1 cut(s)	60
Bse118I	RCCGGY	1 cut(s)	107
BseBI	CCWGG	1 cut(s)	276
BseDI	CCNNGG	1 cut(s)	204
BseGI	GGATG	1 cut(s)	300
BseLI	CCNNNNNNNGG	1 cut(s)	60
BseXI	GCAGC	4 cut(s)	41, 170, 192, 279
BsgI	GTGCAG	1 cut(s)	169
Bsh1236I	CGCG	1 cut(s)	242
BshFI	GGCC	2 cut(s)	85, 279
BshNI	GGYRCC	1 cut(s)	200
BsiSI	CCGG	3 cut(s)	54, 108, 291
BslI	CCNNNNNNNGG	1 cut(s)	60
BsmAI	GTCTC	1 cut(s)	42
BsnI	GGCC	2 cut(s)	85, 279
Bsp143I	GATC	1 cut(s)	226
Bsp68I	TCGCGA	1 cut(s)	242
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	2 cut(s)	85, 279
BspFNI	CGCG	1 cut(s)	242
BspLI	GGNNCC	1 cut(s)	202
BspPI	GGATC	1 cut(s)	234
BspT107I	GGYRCC	1 cut(s)	200
BsrFI	RCCGGY	1 cut(s)	107
BssAI	RCCGGY	1 cut(s)	107
BssECI	CCNNGG	1 cut(s)	204
BssMI	GATC	1 cut(s)	226
BssT1I	CCWWGG	1 cut(s)	204
Bst2UI	CCWGG	1 cut(s)	276
Bst4CI	ACNGT	1 cut(s)	43
BstC8I	GCNNGC	2 cut(s)	95, 240
BstF5I	GGATG	1 cut(s)	300
BstFNI	CGCG	1 cut(s)	242
BstKTI	GATC	1 cut(s)	229
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	1 cut(s)	226
BstMWI	GCNNNNNNNGC	2 cut(s)	276, 311
BstNI	CCWGG	1 cut(s)	276
BstSCI	CCNGG	2 cut(s)	274, 290
BstUI	CGCG	1 cut(s)	242
BstV1I	GCAGC	4 cut(s)	41, 170, 192, 279
BsuRI	GGCC	2 cut(s)	85, 279
BtsCI	GGATG	1 cut(s)	300
BtsI	GCAGTG	1 cut(s)	280
BtsIMutI	CAGTG	1 cut(s)	280
BtuMI	TCGCGA	1 cut(s)	242
Cac8I	GCNNGC	2 cut(s)	95, 240
Cfr10I	RCCGGY	1 cut(s)	107
Cfr13I	GGNCC	1 cut(s)	84
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
DraIII	CACNNNGTG	1 cut(s)	151
Eco130I	CCWWGG	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	274
EcoT14I	CCWWGG	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	204
FaiI	YATR	6 cut(s)	21, 39, 132, 177, 263, 265
FauNDI	CATATG	1 cut(s)	263
Fnu4HI	GCNGC	4 cut(s)	30, 181, 184, 268
FokI	GGATG	1 cut(s)	307
Fsp4HI	GCNGC	4 cut(s)	30, 181, 184, 268
GluI	GCNGC	4 cut(s)	30, 181, 184, 268
HaeIII	GGCC	2 cut(s)	85, 279
HapII	CCGG	3 cut(s)	54, 108, 291
HinfI	GANTC	3 cut(s)	50, 134, 287
HpaII	CCGG	3 cut(s)	54, 108, 291
HphI	GGTGA	1 cut(s)	122
Hpy188III	TCNNGA	2 cut(s)	70, 241
HpyAV	CCTTC	3 cut(s)	160, 217, 292
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4V	TGCA	3 cut(s)	29, 186, 267
HpyF10VI	GCNNNNNNNGC	2 cut(s)	276, 311
Kzo9I	GATC	1 cut(s)	226
LmnI	GCTCC	1 cut(s)	63
LpnPI	CCDG	5 cut(s)	67, 121, 261, 288, 304
Lsp1109I	GCAGC	4 cut(s)	41, 170, 192, 279
MalI	GATC	1 cut(s)	228
MboI	GATC	1 cut(s)	226
MluCI	AATT	3 cut(s)	98, 120, 141
MlyI	GAGTC	3 cut(s)	44, 128, 296
MmeI	TCCRAC	1 cut(s)	25
MnlI	CCTC	2 cut(s)	191, 239
MroXI	GAANNNNTTC	1 cut(s)	257
MseI	TTAA	1 cut(s)	24
MspA1I	CMGCKG	1 cut(s)	183
MspI	CCGG	3 cut(s)	54, 108, 291
MspR9I	CCNGG	2 cut(s)	276, 292
MvaI	CCWGG	1 cut(s)	276
MvnI	CGCG	1 cut(s)	242
MwoI	GCNNNNNNNGC	2 cut(s)	276, 311
NciI	CCSGG	1 cut(s)	292
NdeI	CATATG	1 cut(s)	263
NdeII	GATC	1 cut(s)	226
NlaIV	GGNNCC	1 cut(s)	202
NruI	TCGCGA	1 cut(s)	242
PdmI	GAANNNNTTC	1 cut(s)	257
PfoI	TCCNGGA	1 cut(s)	290
PkrI	GCNGC	4 cut(s)	31, 182, 185, 269
PleI	GAGTC	3 cut(s)	44, 128, 295
PpsI	GAGTC	3 cut(s)	44, 128, 295
Psp6I	CCWGG	1 cut(s)	274
PspGI	CCWGG	1 cut(s)	274
PspN4I	GGNNCC	1 cut(s)	202
PspPI	GGNCC	1 cut(s)	84
PvuII	CAGCTG	1 cut(s)	183
RruI	TCGCGA	1 cut(s)	242
SaqAI	TTAA	1 cut(s)	24
SatI	GCNGC	4 cut(s)	30, 181, 184, 268
Sau3AI	GATC	1 cut(s)	226
Sau96I	GGNCC	1 cut(s)	84
SchI	GAGTC	3 cut(s)	44, 128, 296
ScrFI	CCNGG	2 cut(s)	276, 292
Sse9I	AATT	3 cut(s)	98, 120, 141
SsiI	CCGC	1 cut(s)	5
StyD4I	CCNGG	2 cut(s)	274, 290
StyI	CCWWGG	1 cut(s)	204
TaaI	ACNGT	1 cut(s)	43
TasI	AATT	3 cut(s)	98, 120, 141
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TscAI	CASTG	1 cut(s)	287
TseI	GCWGC	4 cut(s)	29, 180, 183, 267
TspDTI	ATGAA	2 cut(s)	250, 311
TspRI	CASTG	1 cut(s)	287
XmnI	GAANNNNTTC	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.