Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003671

Physical Location & Seq

Genomic Coordinates Forward (+)

39679256 .. 39680500

Gene Structure 1245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG220600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGAACTCTCAGGGAAGAGGCAGTGCCAGATTTAATATTATGCAGGTGGTTGCAGTGCTACTGCTACTATGCCTCATGGCGGTTCAGTTGGAATATGTTAATGCAGCTACCTATACAGTTGGAGACTCCGGTGGGTGGAGCTTCAAGACTGATAAATGGCCCAACGGCAAGCAATTTAGAGCCGGTGATGTTCTAATTTTCAACTATGACTCTACAATTCACAATGTGGTAGCTGTGGGGAAGGGTGGTTATAGCAGCTGCACAACTCCAAGAGGTGCCAAGGTGCTTACATCGGGGAAGGATCGGGTGAAGCTCGCGAGAGGACAGAACTACTTCATATGCAGCTTTCCAGGCCACTGCGAGTCCGGGATGAAGGTAGCCATCAATGCTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0009856 GO:0009908 GO:0016020 GO:0022414 GO:0031012 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0044421 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0046658 GO:0048046 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0051704 GO:0061458 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

131

Amino Acids

14.13

Weight (kDa)

9.48

Isoelectric Point (pI)

22.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	47 - 124	1.5e-26	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02850
fragaria_vesca	FvH4_2g15050 FvH4_2g15050 FvH4_5g30150 FvH4_5g30170 FvH4_5g30180
malus_domestica	MD08G1224900.v1.1 MD15G1418000.v1.1 MD15G1418100.v1.1
prunus_persica	Prupe.1G562200_v2.0.a1 Prupe.1G562300_v2.0.a1 Prupe.8G016000_v2.0.a1
pyrus_communis	pycom05g00630 pycom15g37120 pycom15g37130
rosa_chinensis	RchiOBHm_Chr6g0277611 RchiOBHm_Chr7g0224441
rosa_laevigata	RLG00000001895 RLG00000013286
rosa_multiflora	Rmu_sc0001846.1_g000011 Rmu_ssc0000051.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234760 Rroxscaffold_7G00191160
rosa_rugosa	Rorug06G0110400 Rorug07G0223200
rosa_samantha	Rh6AG220600 Rh6BG224600 Rh6CG226800 Rh6DG217400 Rh7AG380000 Rh7BG359400 Rh7CG399500 Rh7DG369000
rosa_wichuraiana	Rw6G019340 Rw7G031170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	34
Acc36I	ACCTGC	1 cut(s)	34
AccB1I	GGYRCC	1 cut(s)	275
AccII	CGCG	1 cut(s)	317
AciI	CCGC	1 cut(s)	80
AclWI	GGATC	1 cut(s)	309
AdeI	CACNNNGTG	1 cut(s)	226
AfiI	CCNNNNNNNGG	2 cut(s)	79, 135
AgsI	TTSAA	2 cut(s)	145, 202
AjnI	CCWGG	1 cut(s)	349
AluBI	AGCT	6 cut(s)	107, 141, 233, 258, 313, 345
AluI	AGCT	6 cut(s)	107, 141, 233, 258, 313, 345
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	1 cut(s)	309
AoxI	GGCC	2 cut(s)	158, 352
ApeKI	GCWGC	4 cut(s)	104, 255, 258, 342
Asp700I	GAANNNNTTC	1 cut(s)	332
AspS9I	GGNCC	1 cut(s)	159
AsuC2I	CCSGG	1 cut(s)	367
AsuHPI	GGTGA	2 cut(s)	197, 319
BanI	GGYRCC	1 cut(s)	275
BbvI	GCAGC	4 cut(s)	116, 245, 267, 354
BccI	CCATC	1 cut(s)	389
BceAI	ACGGC	1 cut(s)	181
BciT130I	CCWGG	1 cut(s)	351
BcnI	CCSGG	1 cut(s)	367
BcoDI	GTCTC	1 cut(s)	117
BfuAI	ACCTGC	1 cut(s)	34
BisI	GCNGC	4 cut(s)	105, 256, 259, 343
BlsI	GCNGC	4 cut(s)	106, 257, 260, 344
Bme1390I	CCNGG	2 cut(s)	351, 367
BmgT120I	GGNCC	1 cut(s)	159
BmiI	GGNNCC	1 cut(s)	277
BmrFI	CCNGG	2 cut(s)	351, 367
BpuMI	CCSGG	1 cut(s)	367
BsaJI	CCNNGG	1 cut(s)	279
BsaWI	WCCGGW	1 cut(s)	128
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 135
Bse118I	RCCGGY	1 cut(s)	182
BseBI	CCWGG	1 cut(s)	351
BseDI	CCNNGG	1 cut(s)	279
BseGI	GGATG	1 cut(s)	375
BseLI	CCNNNNNNNGG	2 cut(s)	79, 135
BseMII	CTCAG	1 cut(s)	23
BseXI	GCAGC	4 cut(s)	116, 245, 267, 354
BsgI	GTGCAG	1 cut(s)	244
Bsh1236I	CGCG	1 cut(s)	317
BshFI	GGCC	2 cut(s)	160, 354
BshNI	GGYRCC	1 cut(s)	275
BsiSI	CCGG	3 cut(s)	129, 183, 366
BslI	CCNNNNNNNGG	2 cut(s)	79, 135
BsmAI	GTCTC	1 cut(s)	117
BsnI	GGCC	2 cut(s)	160, 354
Bsp143I	GATC	1 cut(s)	301
Bsp68I	TCGCGA	1 cut(s)	317
BspACI	CCGC	1 cut(s)	80
BspANI	GGCC	2 cut(s)	160, 354
BspCNI	CTCAG	1 cut(s)	22
BspFNI	CGCG	1 cut(s)	317
BspLI	GGNNCC	1 cut(s)	277
BspMI	ACCTGC	1 cut(s)	34
BspPI	GGATC	1 cut(s)	309
BspT107I	GGYRCC	1 cut(s)	275
BsrFI	RCCGGY	1 cut(s)	182
BssAI	RCCGGY	1 cut(s)	182
BssECI	CCNNGG	1 cut(s)	279
BssMI	GATC	1 cut(s)	301
BssT1I	CCWWGG	1 cut(s)	279
Bst2UI	CCWGG	1 cut(s)	351
Bst4CI	ACNGT	1 cut(s)	118
Bst6I	CTCTTC	1 cut(s)	10
BstC8I	GCNNGC	2 cut(s)	170, 315
BstDEI	CTNAG	1 cut(s)	9
BstF5I	GGATG	1 cut(s)	375
BstFNI	CGCG	1 cut(s)	317
BstKTI	GATC	1 cut(s)	304
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	1 cut(s)	301
BstMWI	GCNNNNNNNGC	2 cut(s)	351, 386
BstNI	CCWGG	1 cut(s)	351
BstSCI	CCNGG	2 cut(s)	349, 365
BstUI	CGCG	1 cut(s)	317
BstV1I	GCAGC	4 cut(s)	116, 245, 267, 354
BsuRI	GGCC	2 cut(s)	160, 354
BtsCI	GGATG	1 cut(s)	375
BtsI	GCAGTG	3 cut(s)	28, 60, 355
BtsIMutI	CAGTG	3 cut(s)	28, 60, 355
BtuMI	TCGCGA	1 cut(s)	317
BveI	ACCTGC	1 cut(s)	34
Cac8I	GCNNGC	2 cut(s)	170, 315
Cfr10I	RCCGGY	1 cut(s)	182
Cfr13I	GGNCC	1 cut(s)	159
CviAII	CATG	1 cut(s)	76
DdeI	CTNAG	1 cut(s)	9
DpnI	GATC	1 cut(s)	303
DpnII	GATC	1 cut(s)	301
DraIII	CACNNNGTG	1 cut(s)	226
Eam1104I	CTCTTC	1 cut(s)	10
EarI	CTCTTC	1 cut(s)	10
Eco130I	CCWWGG	1 cut(s)	279
EcoRII	CCWGG	1 cut(s)	349
EcoT14I	CCWWGG	1 cut(s)	279
ErhI	CCWWGG	1 cut(s)	279
FaeI	CATG	1 cut(s)	79
FaiI	YATR	9 cut(s)	41, 70, 77, 96, 114, 207, 252, 338, 340
FatI	CATG	1 cut(s)	75
FauNDI	CATATG	1 cut(s)	338
Fnu4HI	GCNGC	4 cut(s)	105, 256, 259, 343
FokI	GGATG	1 cut(s)	382
Fsp4HI	GCNGC	4 cut(s)	105, 256, 259, 343
GluI	GCNGC	4 cut(s)	105, 256, 259, 343
HaeIII	GGCC	2 cut(s)	160, 354
HapII	CCGG	3 cut(s)	129, 183, 366
Hin1II	CATG	1 cut(s)	79
HinfI	GANTC	3 cut(s)	125, 209, 362
HpaII	CCGG	3 cut(s)	129, 183, 366
HphI	GGTGA	2 cut(s)	197, 319
Hpy188III	TCNNGA	2 cut(s)	145, 316
HpyAV	CCTTC	3 cut(s)	235, 292, 367
HpyCH4III	ACNGT	1 cut(s)	118
HpyCH4V	TGCA	5 cut(s)	43, 53, 104, 261, 342
HpyF10VI	GCNNNNNNNGC	2 cut(s)	351, 386
HpyF3I	CTNAG	1 cut(s)	9
Hsp92II	CATG	1 cut(s)	79
Kzo9I	GATC	1 cut(s)	301
LmnI	GCTCC	1 cut(s)	138
LpnPI	CCDG	7 cut(s)	29, 40, 142, 196, 336, 363, 379
Lsp1109I	GCAGC	4 cut(s)	116, 245, 267, 354
MalI	GATC	1 cut(s)	303
MboI	GATC	1 cut(s)	301
MboII	GAAGA	1 cut(s)	27
MluCI	AATT	3 cut(s)	173, 195, 216
MlyI	GAGTC	3 cut(s)	119, 203, 371
MmeI	TCCRAC	2 cut(s)	69, 100
MnlI	CCTC	4 cut(s)	11, 83, 266, 314
MroXI	GAANNNNTTC	1 cut(s)	332
MseI	TTAA	2 cut(s)	33, 99
MspA1I	CMGCKG	1 cut(s)	258
MspI	CCGG	3 cut(s)	129, 183, 366
MspR9I	CCNGG	2 cut(s)	351, 367
MvaI	CCWGG	1 cut(s)	351
MvnI	CGCG	1 cut(s)	317
MwoI	GCNNNNNNNGC	2 cut(s)	351, 386
NciI	CCSGG	1 cut(s)	367
NdeI	CATATG	1 cut(s)	338
NdeII	GATC	1 cut(s)	301
NlaIII	CATG	1 cut(s)	79
NlaIV	GGNNCC	1 cut(s)	277
NruI	TCGCGA	1 cut(s)	317
PaqCI	CACCTGC	1 cut(s)	34
PdmI	GAANNNNTTC	1 cut(s)	332
PfoI	TCCNGGA	1 cut(s)	365
PkrI	GCNGC	4 cut(s)	106, 257, 260, 344
PleI	GAGTC	3 cut(s)	119, 203, 370
PpsI	GAGTC	3 cut(s)	119, 203, 370
Psp6I	CCWGG	1 cut(s)	349
PspGI	CCWGG	1 cut(s)	349
PspN4I	GGNNCC	1 cut(s)	277
PspPI	GGNCC	1 cut(s)	159
PvuII	CAGCTG	1 cut(s)	258
RruI	TCGCGA	1 cut(s)	317
SaqAI	TTAA	2 cut(s)	33, 99
SatI	GCNGC	4 cut(s)	105, 256, 259, 343
Sau3AI	GATC	1 cut(s)	301
Sau96I	GGNCC	1 cut(s)	159
SchI	GAGTC	3 cut(s)	119, 203, 371
ScrFI	CCNGG	2 cut(s)	351, 367
Sse9I	AATT	3 cut(s)	173, 195, 216
SsiI	CCGC	1 cut(s)	80
SspI	AATATT	1 cut(s)	37
StyD4I	CCNGG	2 cut(s)	349, 365
StyI	CCWWGG	1 cut(s)	279
TaaI	ACNGT	1 cut(s)	118
TasI	AATT	3 cut(s)	173, 195, 216
Tru1I	TTAA	2 cut(s)	33, 99
Tru9I	TTAA	2 cut(s)	33, 99
TscAI	CASTG	3 cut(s)	28, 60, 362
TseI	GCWGC	4 cut(s)	104, 255, 258, 342
TspDTI	ATGAA	3 cut(s)	17, 325, 386
TspRI	CASTG	3 cut(s)	28, 60, 362
XmnI	GAANNNNTTC	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.