Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003671

Physical Location & Seq

Genomic Coordinates Forward (+)

14961276 .. 14961557

Gene Structure 282 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0110400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGAAGCACTGGACAGAAGAGAGAGACAATGTTGATGGAGAAGAAAGCGAAAATGACACTGGATCAAATGTGACAGCAGAAGTGATGGACAATGTGAATGGAGAAGGAAGCGGAAATGACAATGGAGTTGGTGAGACAGTAGAAATGAAAGAAAACACTTATGGAGAGGCAAGCATGACTAACAATGGATCCAATGGGGAAGGAGAAGTAAGGGACAACAATGGAGATGGAAGCAGTCATACTGTTGTGCATCCCATCGGAGGGCTTATTCCATTCGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0009856 GO:0009908 GO:0016020 GO:0022414 GO:0031012 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0044421 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0046658 GO:0048046 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0051704 GO:0061458 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

93

Amino Acids

9.83

Weight (kDa)

4.05

Isoelectric Point (pI)

1.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02850
fragaria_vesca	FvH4_2g15050 FvH4_2g15050 FvH4_5g30150 FvH4_5g30170 FvH4_5g30180
malus_domestica	MD08G1224900.v1.1 MD15G1418000.v1.1 MD15G1418100.v1.1
prunus_persica	Prupe.1G562200_v2.0.a1 Prupe.1G562300_v2.0.a1 Prupe.8G016000_v2.0.a1
pyrus_communis	pycom05g00630 pycom15g37120 pycom15g37130
rosa_chinensis	RchiOBHm_Chr6g0277611 RchiOBHm_Chr7g0224441
rosa_laevigata	RLG00000001895 RLG00000013286
rosa_multiflora	Rmu_sc0001846.1_g000011 Rmu_ssc0000051.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234760 Rroxscaffold_7G00191160
rosa_rugosa	Rorug06G0110400 Rorug07G0223200
rosa_samantha	Rh6AG220600 Rh6BG224600 Rh6CG226800 Rh6DG217400 Rh7AG380000 Rh7BG359400 Rh7CG399500 Rh7DG369000
rosa_wichuraiana	Rw6G019340 Rw7G031170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	111
AclWI	GGATC	3 cut(s)	70, 183, 196
AfiI	CCNNNNNNNGG	2 cut(s)	260, 261
Alw26I	GTCTC	2 cut(s)	18, 128
AlwI	GGATC	3 cut(s)	70, 183, 196
AsuHPI	GGTGA	1 cut(s)	143
BamHI	GGATCC	1 cut(s)	188
BarI	GAAGNNNNNNTAC	2 cut(s)	223, 255
BccI	CCATC	4 cut(s)	29, 79, 221, 263
BcoDI	GTCTC	2 cut(s)	18, 128
BmiI	GGNNCC	1 cut(s)	190
BmsI	GCATC	1 cut(s)	259
Bsc4I	CCNNNNNNNGG	2 cut(s)	260, 261
Bse1I	ACTGG	2 cut(s)	14, 64
BseGI	GGATG	1 cut(s)	250
BseLI	CCNNNNNNNGG	2 cut(s)	260, 261
BseNI	ACTGG	2 cut(s)	14, 64
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	2 cut(s)	260, 261
BsmAI	GTCTC	2 cut(s)	18, 128
BsmFI	GGGAC	1 cut(s)	227
Bsp143I	GATC	2 cut(s)	62, 188
BspACI	CCGC	1 cut(s)	111
BspLI	GGNNCC	1 cut(s)	190
BspPI	GGATC	3 cut(s)	70, 183, 196
BsrI	ACTGG	2 cut(s)	14, 64
BssMI	GATC	2 cut(s)	62, 188
Bst4CI	ACNGT	2 cut(s)	139, 244
Bst6I	CTCTTC	1 cut(s)	12
BstC8I	GCNNGC	1 cut(s)	172
BstF5I	GGATG	1 cut(s)	250
BstKTI	GATC	2 cut(s)	65, 191
BstMAI	GTCTC	2 cut(s)	18, 128
BstMBI	GATC	2 cut(s)	62, 188
BstX2I	RGATCY	1 cut(s)	188
BstYI	RGATCY	1 cut(s)	188
BtsCI	GGATG	1 cut(s)	250
BtsIMutI	CAGTG	2 cut(s)	7, 57
Cac8I	GCNNGC	1 cut(s)	172
CviAII	CATG	1 cut(s)	175
CviJI	RGCY	1 cut(s)	265
CviKI_1	RGCY	1 cut(s)	265
DpnI	GATC	2 cut(s)	64, 190
DpnII	GATC	2 cut(s)	62, 188
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
FaeI	CATG	1 cut(s)	178
FaiI	YATR	3 cut(s)	162, 176, 240
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	1 cut(s)	174
FokI	GGATG	1 cut(s)	237
Hin1II	CATG	1 cut(s)	178
HphI	GGTGA	1 cut(s)	143
Hpy188I	TCNGA	1 cut(s)	260
HpyAV	CCTTC	2 cut(s)	98, 194
HpyCH4III	ACNGT	2 cut(s)	139, 244
HpyCH4V	TGCA	1 cut(s)	250
Hsp92II	CATG	1 cut(s)	178
Kzo9I	GATC	2 cut(s)	62, 188
LpnPI	CCDG	1 cut(s)	45
LweI	GCATC	1 cut(s)	259
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	2 cut(s)	64, 190
MboI	GATC	2 cut(s)	62, 188
MboII	GAAGA	2 cut(s)	29, 53
MflI	RGATCY	1 cut(s)	188
MnlI	CCTC	2 cut(s)	160, 254
MslI	CAYNNNNRTG	1 cut(s)	277
NdeII	GATC	2 cut(s)	62, 188
NlaIII	CATG	1 cut(s)	178
NlaIV	GGNNCC	1 cut(s)	190
NmuCI	GTSAC	1 cut(s)	70
PspN4I	GGNNCC	1 cut(s)	190
PsuI	RGATCY	1 cut(s)	188
RseI	CAYNNNNRTG	1 cut(s)	277
Sau3AI	GATC	2 cut(s)	62, 188
SfaNI	GCATC	1 cut(s)	259
SgeI	CNNG	4 cut(s)	22, 72, 183, 187
SmiMI	CAYNNNNRTG	1 cut(s)	277
SsiI	CCGC	1 cut(s)	111
TaaI	ACNGT	2 cut(s)	139, 244
TscAI	CASTG	2 cut(s)	14, 64
TseFI	GTSAC	1 cut(s)	70
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	2 cut(s)	17, 161
TspRI	CASTG	2 cut(s)	14, 64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.