Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003376

Physical Location & Seq

Genomic Coordinates Forward (+)

1918273 .. 1920042

Gene Structure 1770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G05260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGCCTCTGATAGAGAAGAGTTTAACTTGTGTGGACCTACACACCTCACAACTGTTGATTGGGGAAATGAAGATCACCAACGTTGTGTAGCAGCTTGTTTGGTACAAGGAATCTATATAGTAGAGCAAGACCGTCAGCTTAAACGTGAAGGCACTGAAGCTCTTGCATCTCCATGGTGGGAATCATTCAACTTTAAATTGATCCGTCACCTTAAAGACGATGCTGATTTCTCCATCTTTGGTGGCATTTTTGAATACAAATCGTTACAGCCAGATGTTGTGGACTCTGGAGTTCCACGGTATGTTATAGCCTTTAGAGGGACTTTGACTAAAGCGGATTCGATAACCCGTGATATCGAGTTGGATATCCATATTATACGGAATGGGCTTCACCGAACGTCGCGTTTTGAGATAGCGATGCAAGCTGTGAGAAGTATGGCTGATTCTGTGGGAGCTTCGAGCTTTTGGCTTACGGGGCATTCTTTAGGTGCAGCGATGGCGCTTCTTGCTGGTAAAACAATGGGGAAGAGTGGAGTTTATATTAAGTCATTGTTGTTTAACCCTCCTTATGTGTCTCCCCCGATTGAGAGGATAGCAAACGAACGGGTTAGGCACGGGATTAGATTCGCGGGGAGTCTAATCACCGCAGGACTCGCTCTCTCTAGAACTCTTAAACAAACACAGCAGCCGCAACAACAGCAACTGCAACTACAAAACTTGACTGAAGATCCACTAGAGGCATTATCTTCGTGGCTCCCTAACATACATGTAAATCCAGGGGACCATCTATGTTCGGAGTATATCGGGTTTTTCGAGCACCGGGGAAATATGGAACAGATTGGGTATGGAGCCGGAATTGTGGAGCGGATGGCGATGCAGCATTCCTTGGGAGGTTTGTTGATGGATGCGATGGGAGTGAGCAATGCAGTTGAAGTAGAAGAGCCGGTTCATGTCATCCCATCTGCTAATCTTATAGTAAACAAAACCATATCCGAAGATTACAAGGACGCTCATGGGATACACCAATGGTGGAGAGATGACCAAGATTTGGTTTCCCACATTTACATGTACAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

358

Amino Acids

40.13

Weight (kDa)

5.74

Isoelectric Point (pI)

40.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05260 AT2G05260 AT4G10955 AT4G10955
fragaria_vesca	FvH4_5g04751 FvH4_5g04751 FvH4_5g04760
malus_domestica	MD06G1108800.v1.1 MD14G1129700.v1.1
prunus_persica	Prupe.5G121400_v2.0.a1 Prupe.5G121400_v2.0.a1 Prupe.5G121600_v2.0.a1
pyrus_communis	pycom06g10220
rosa_chinensis	RchiOBHm_Chr7g0194501 RchiOBHm_Chr7g0194511
rosa_laevigata	RLG00000004195 RLG00000004196 RLG00000023363 RLG00000023364
rosa_multiflora	Rmu_co8167496.1_g000001 Rmu_co8479523.1_g000001 Rmu_sc0041088.1_g000001 Rmu_ssc0000261.1_g000021
rosa_roxburghii	Rroxscaffold_3G00261290 Rroxscaffold_3G00261300
rosa_rugosa	Rorug07G0016000
rosa_samantha	Rh7AG143400 Rh7AG143500 Rh7BG143900 Rh7BG144000 Rh7CG147600 Rh7CG147700 Rh7DG145200 Rh7DG145300
rosa_wichuraiana	Rw7G012280 Rw7G012290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1048
AccBSI	CCGCTC	1 cut(s)	865
AccII	CGCG	2 cut(s)	403, 629
AciI	CCGC	5 cut(s)	335, 629, 645, 689, 865
AclI	AACGTT	1 cut(s)	82
AclWI	GGATC	2 cut(s)	196, 722
AcuI	CTGAAG	2 cut(s)	177, 744
AfaI	GTAC	2 cut(s)	105, 1070
AfiI	CCNNNNNNNGG	2 cut(s)	318, 1048
AflIII	ACRYGT	2 cut(s)	766, 1065
AgsI	TTSAA	3 cut(s)	190, 254, 932
AjnI	CCWGG	1 cut(s)	775
AluBI	AGCT	6 cut(s)	95, 139, 161, 425, 455, 462
AluI	AGCT	6 cut(s)	95, 139, 161, 425, 455, 462
Alw21I	GWGCWC	1 cut(s)	819
Alw26I	GTCTC	1 cut(s)	579
AlwI	GGATC	2 cut(s)	196, 722
AlwNI	CAGNNNCTG	1 cut(s)	703
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	4 cut(s)	92, 491, 685, 877
AspLEI	GCGC	1 cut(s)	502
AspS9I	GGNCC	2 cut(s)	35, 781
AsuC2I	CCSGG	1 cut(s)	821
AsuHPI	GGTGA	4 cut(s)	68, 200, 383, 634
AvaII	GGWCC	2 cut(s)	35, 781
Bbv12I	GWGCWC	1 cut(s)	819
BbvI	GCAGC	4 cut(s)	104, 503, 697, 889
BccI	CCATC	7 cut(s)	242, 490, 792, 862, 895, 904, 967
BcgI	CGANNNNNNTGC	2 cut(s)	729, 763
BciT130I	CCWGG	1 cut(s)	777
BciVI	GTATCC	1 cut(s)	1011
BcnI	CCSGG	1 cut(s)	821
BcoDI	GTCTC	1 cut(s)	579
BfaI	CTAG	2 cut(s)	663, 734
BfoI	RGCGCY	1 cut(s)	503
BfuI	GTATCC	1 cut(s)	1011
BisI	GCNGC	5 cut(s)	93, 492, 686, 689, 878
BlsI	GCNGC	5 cut(s)	94, 493, 687, 690, 879
Bme1390I	CCNGG	2 cut(s)	777, 821
Bme18I	GGWCC	2 cut(s)	35, 781
BmgT120I	GGNCC	2 cut(s)	35, 781
BmiI	GGNNCC	3 cut(s)	755, 782, 850
BmrFI	CCNGG	2 cut(s)	777, 821
BmsI	GCATC	5 cut(s)	176, 211, 408, 864, 895
BpmI	CTGGAG	1 cut(s)	309
BpuMI	CCSGG	1 cut(s)	821
BsaJI	CCNNGG	5 cut(s)	173, 296, 776, 820, 885
Bsc4I	CCNNNNNNNGG	2 cut(s)	318, 1048
Bse118I	RCCGGY	1 cut(s)	943
Bse3DI	GCAATG	1 cut(s)	928
BseBI	CCWGG	1 cut(s)	777
BseDI	CCNNGG	5 cut(s)	173, 296, 776, 820, 885
BseGI	GGATG	3 cut(s)	873, 910, 954
BseLI	CCNNNNNNNGG	2 cut(s)	318, 1048
BseMI	GCAATG	1 cut(s)	928
BseXI	GCAGC	4 cut(s)	104, 503, 697, 889
BsgI	GTGCAG	1 cut(s)	510
Bsh1236I	CGCG	2 cut(s)	403, 629
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	819
BsiSI	CCGG	3 cut(s)	820, 852, 944
BslFI	GGGAC	2 cut(s)	334, 794
BslI	CCNNNNNNNGG	2 cut(s)	318, 1048
BsmAI	GTCTC	1 cut(s)	579
BsmFI	GGGAC	2 cut(s)	334, 794
BsmI	GAATGC	2 cut(s)	478, 880
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	819
Bsp1407I	TGTACA	1 cut(s)	1068
Bsp143I	GATC	3 cut(s)	73, 201, 727
Bsp19I	CCATGG	1 cut(s)	173
BspACI	CCGC	5 cut(s)	335, 629, 645, 689, 865
BspANI	GGCC	1 cut(s)	5
BspFNI	CGCG	2 cut(s)	403, 629
BspLI	GGNNCC	3 cut(s)	755, 782, 850
BspPI	GGATC	2 cut(s)	196, 722
BspQI	GCTCTTC	1 cut(s)	933
BsrBI	CCGCTC	1 cut(s)	865
BsrDI	GCAATG	1 cut(s)	928
BsrFI	RCCGGY	1 cut(s)	943
BsrGI	TGTACA	1 cut(s)	1068
BssAI	RCCGGY	1 cut(s)	943
BssECI	CCNNGG	5 cut(s)	173, 296, 776, 820, 885
BssMI	GATC	3 cut(s)	73, 201, 727
BssT1I	CCWWGG	2 cut(s)	173, 885
Bst2UI	CCWGG	1 cut(s)	777
Bst4CI	ACNGT	3 cut(s)	55, 134, 300
Bst6I	CTCTTC	3 cut(s)	12, 521, 933
BstAUI	TGTACA	1 cut(s)	1068
BstC8I	GCNNGC	1 cut(s)	423
BstDSI	CCRYGG	2 cut(s)	173, 296
BstF5I	GGATG	3 cut(s)	873, 910, 954
BstFNI	CGCG	2 cut(s)	403, 629
BstH2I	RGCGCY	1 cut(s)	503
BstHHI	GCGC	1 cut(s)	502
BstKTI	GATC	3 cut(s)	76, 204, 730
BstMAI	GTCTC	1 cut(s)	579
BstMBI	GATC	3 cut(s)	73, 201, 727
BstMWI	GCNNNNNNNGC	6 cut(s)	422, 475, 497, 506, 653, 697
BstNI	CCWGG	1 cut(s)	777
BstNSI	RCATGY	2 cut(s)	770, 1069
BstSCI	CCNGG	2 cut(s)	775, 819
BstUI	CGCG	2 cut(s)	403, 629
BstV1I	GCAGC	4 cut(s)	104, 503, 697, 889
BstX2I	RGATCY	1 cut(s)	727
BstYI	RGATCY	1 cut(s)	727
BsuI	GTATCC	1 cut(s)	1011
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	2 cut(s)	173, 296
BtgZI	GCGATG	4 cut(s)	431, 509, 887, 923
BtsCI	GGATG	3 cut(s)	873, 910, 954
BtsIMutI	CAGTG	1 cut(s)	153
Cac8I	GCNNGC	1 cut(s)	423
CaiI	CAGNNNCTG	1 cut(s)	703
CfoI	GCGC	1 cut(s)	502
Cfr10I	RCCGGY	1 cut(s)	943
Cfr13I	GGNCC	2 cut(s)	35, 781
CseI	GACGC	1 cut(s)	1016
Csp6I	GTAC	2 cut(s)	104, 1069
CviAII	CATG	5 cut(s)	174, 767, 950, 1013, 1066
CviQI	GTAC	2 cut(s)	104, 1069
DpnI	GATC	3 cut(s)	75, 203, 729
DpnII	GATC	3 cut(s)	73, 201, 727
DraI	TTTAAA	1 cut(s)	196
Eam1104I	CTCTTC	3 cut(s)	12, 521, 933
EarI	CTCTTC	3 cut(s)	12, 521, 933
Eco130I	CCWWGG	2 cut(s)	173, 885
Eco32I	GATATC	2 cut(s)	355, 367
Eco47I	GGWCC	2 cut(s)	35, 781
Eco57I	CTGAAG	2 cut(s)	177, 744
EcoRII	CCWGG	1 cut(s)	775
EcoRV	GATATC	2 cut(s)	355, 367
EcoT14I	CCWWGG	2 cut(s)	173, 885
ErhI	CCWWGG	2 cut(s)	173, 885
FaeI	CATG	5 cut(s)	177, 770, 953, 1016, 1069
FaqI	GGGAC	2 cut(s)	334, 794
FatI	CATG	5 cut(s)	173, 766, 949, 1012, 1065
FauI	CCCGC	1 cut(s)	622
Fnu4HI	GCNGC	5 cut(s)	93, 492, 686, 689, 878
FokI	GGATG	3 cut(s)	880, 917, 941
Fsp4HI	GCNGC	5 cut(s)	93, 492, 686, 689, 878
FspBI	CTAG	2 cut(s)	663, 734
GlaI	GCGC	1 cut(s)	501
GluI	GCNGC	5 cut(s)	93, 492, 686, 689, 878
GsuI	CTGGAG	1 cut(s)	309
HaeII	RGCGCY	1 cut(s)	503
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	820, 852, 944
HgaI	GACGC	1 cut(s)	1016
HhaI	GCGC	1 cut(s)	502
Hin1II	CATG	5 cut(s)	177, 770, 953, 1016, 1069
Hin6I	GCGC	1 cut(s)	500
HinP1I	GCGC	1 cut(s)	500
HinfI	GANTC	8 cut(s)	111, 182, 284, 338, 443, 624, 634, 651
HpaII	CCGG	3 cut(s)	820, 852, 944
HphI	GGTGA	4 cut(s)	68, 200, 383, 634
Hpy166II	GTNNAC	3 cut(s)	35, 283, 979
Hpy188I	TCNGA	3 cut(s)	10, 796, 994
Hpy188III	TCNNGA	2 cut(s)	288, 663
Hpy8I	GTNNAC	3 cut(s)	35, 283, 979
Hpy99I	CGWCG	1 cut(s)	403
HpyAV	CCTTC	1 cut(s)	143
HpyCH4III	ACNGT	3 cut(s)	55, 134, 300
HpyCH4IV	ACGT	3 cut(s)	82, 145, 398
HpyCH4V	TGCA	6 cut(s)	167, 421, 491, 706, 877, 926
HpyF10VI	GCNNNNNNNGC	6 cut(s)	422, 475, 497, 506, 653, 697
HpySE526I	ACGT	3 cut(s)	82, 145, 398
Hsp92II	CATG	5 cut(s)	177, 770, 953, 1016, 1069
HspAI	GCGC	1 cut(s)	500
Kzo9I	GATC	3 cut(s)	73, 201, 727
LguI	GCTCTTC	1 cut(s)	933
LmnI	GCTCC	4 cut(s)	452, 759, 848, 862
LpnPI	CCDG	9 cut(s)	273, 285, 495, 633, 762, 789, 833, 865, 957
Lsp1109I	GCAGC	4 cut(s)	104, 503, 697, 889
LweI	GCATC	5 cut(s)	176, 211, 408, 864, 895
MaeI	CTAG	2 cut(s)	663, 734
MaeII	ACGT	3 cut(s)	82, 145, 398
MaeIII	GTNAC	2 cut(s)	206, 264
MalI	GATC	3 cut(s)	75, 203, 729
MbiI	CCGCTC	1 cut(s)	865
MboI	GATC	3 cut(s)	73, 201, 727
MboII	GAAGA	7 cut(s)	29, 83, 538, 737, 738, 950, 1007
MflI	RGATCY	1 cut(s)	727
MhlI	GDGCHC	1 cut(s)	819
MluCI	AATT	2 cut(s)	197, 855
MlyI	GAGTC	3 cut(s)	278, 643, 645
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	7 cut(s)	16, 56, 311, 573, 582, 730, 884
MseI	TTAA	7 cut(s)	24, 141, 195, 213, 543, 558, 672
MslI	CAYNNNNRTG	2 cut(s)	172, 1064
MspI	CCGG	3 cut(s)	820, 852, 944
MspR9I	CCNGG	2 cut(s)	777, 821
Mva1269I	GAATGC	2 cut(s)	478, 880
MvaI	CCWGG	1 cut(s)	777
MvnI	CGCG	2 cut(s)	403, 629
MwoI	GCNNNNNNNGC	6 cut(s)	422, 475, 497, 506, 653, 697
NciI	CCSGG	1 cut(s)	821
NcoI	CCATGG	1 cut(s)	173
NdeII	GATC	3 cut(s)	73, 201, 727
NlaIII	CATG	5 cut(s)	177, 770, 953, 1016, 1069
NlaIV	GGNNCC	3 cut(s)	755, 782, 850
NmuCI	GTSAC	1 cut(s)	206
NspI	RCATGY	2 cut(s)	770, 1069
PciI	ACATGT	2 cut(s)	766, 1065
PciSI	GCTCTTC	1 cut(s)	933
PcsI	WCGNNNNNNNCGW	1 cut(s)	810
PctI	GAATGC	2 cut(s)	478, 880
PfeI	GAWTC	5 cut(s)	111, 182, 338, 443, 624
PflMI	CCANNNNNTGG	1 cut(s)	1048
PkrI	GCNGC	5 cut(s)	94, 493, 687, 690, 879
PleI	GAGTC	3 cut(s)	278, 642, 645
PpsI	GAGTC	3 cut(s)	278, 642, 645
PscI	ACATGT	2 cut(s)	766, 1065
Psp1406I	AACGTT	1 cut(s)	82
Psp6I	CCWGG	1 cut(s)	775
PspGI	CCWGG	1 cut(s)	775
PspN4I	GGNNCC	3 cut(s)	755, 782, 850
PspPI	GGNCC	2 cut(s)	35, 781
PstNI	CAGNNNCTG	1 cut(s)	703
PsuI	RGATCY	1 cut(s)	727
RsaI	GTAC	2 cut(s)	105, 1070
RsaNI	GTAC	2 cut(s)	104, 1069
RseI	CAYNNNNRTG	2 cut(s)	172, 1064
SapI	GCTCTTC	1 cut(s)	933
SaqAI	TTAA	7 cut(s)	24, 141, 195, 213, 543, 558, 672
SatI	GCNGC	5 cut(s)	93, 492, 686, 689, 878
Sau3AI	GATC	3 cut(s)	73, 201, 727
Sau96I	GGNCC	2 cut(s)	35, 781
SchI	GAGTC	3 cut(s)	278, 643, 645
ScrFI	CCNGG	2 cut(s)	777, 821
SduI	GDGCHC	1 cut(s)	819
SfaNI	GCATC	5 cut(s)	176, 211, 408, 864, 895
SinI	GGWCC	2 cut(s)	35, 781
SmiMI	CAYNNNNRTG	2 cut(s)	172, 1064
Sse9I	AATT	2 cut(s)	197, 855
SsiI	CCGC	5 cut(s)	335, 629, 645, 689, 865
SspMI	CTAG	2 cut(s)	663, 734
StyD4I	CCNGG	2 cut(s)	775, 819
StyI	CCWWGG	2 cut(s)	173, 885
TaaI	ACNGT	3 cut(s)	55, 134, 300
TaiI	ACGT	3 cut(s)	85, 148, 401
TaqI	TCGA	4 cut(s)	341, 357, 458, 813
TasI	AATT	2 cut(s)	197, 855
TatI	WGTACW	1 cut(s)	1068
TauI	GCSGC	1 cut(s)	691
TfiI	GAWTC	5 cut(s)	111, 182, 338, 443, 624
Tru1I	TTAA	7 cut(s)	24, 141, 195, 213, 543, 558, 672
Tru9I	TTAA	7 cut(s)	24, 141, 195, 213, 543, 558, 672
TscAI	CASTG	1 cut(s)	160
TseFI	GTSAC	1 cut(s)	206
TseI	GCWGC	4 cut(s)	92, 491, 685, 877
Tsp45I	GTSAC	1 cut(s)	206
TspDTI	ATGAA	2 cut(s)	84, 938
TspGWI	ACGGA	2 cut(s)	194, 394
TspRI	CASTG	1 cut(s)	160
Van91I	CCANNNNNTGG	1 cut(s)	1048
VpaK11BI	GGWCC	2 cut(s)	35, 781
XbaI	TCTAGA	1 cut(s)	662
XceI	RCATGY	2 cut(s)	770, 1069
XspI	CTAG	2 cut(s)	663, 734

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.