Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0003376

Physical Location & Seq

Genomic Coordinates Forward (+)

24821902 .. 24825315

Gene Structure 3414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1108800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGCCTCGGAGAGGGAAAGTTTCGACCTTTCAGGACCATTGCACCTAACTTCCATTGACTGGCAGAACACTCAGCATCAAAGATCTGTTGCTGCCTGTTTGGTTCAGGGTGTCTATGTTCTTGAACGGGACCGCCAAGAGGAAAGAGAAGGGCCCCAAGCCCTCGCTCCTCCTTGGTGGGAGTTCTTCCATTTTAAGCTGCTCCGTAAGCTTGTGGATGATGTTGGTTTCTCTATCTTTGGTGCCTTATACGAATTTAAACCTCCACCGTCTCTTTGTAACCGTCCATCGGAAGGAAGCCCTTGTTATGTAATTGCCTTCCGAGGCACCTTAACAAAGTATGACTCAGTCTCACGAGATCTTGAGTTGGATGTTGAGGTGATCCGAAATGGACTTCACAGGACATCTCGCTTCGAGATTGCTATGCAAGCTGTCCGAAATATGGTTGCTACATCAGGTCCTTCAAATGTTTGGTTAGCTGGCCACTCCCTGGGGTCAGCCATGGCAATGCTTGCTGGAAAAACTATGGCTAGCTCTGGCAATTATCTCGAATCTTTTCTCTTCAATCCGCCATTTGTGTCGGCCCCAATAGAGAGGATTCAGGATACGAGAGTGAAGCATGGGCTTCGGTTTGCAGGCAGTGTGATTACTGCTGGACTCGCTCTTGCTATGAAGGCTAAACAGCAGCAGCAGCAACAACAACAACAACAACAACAACATAGAAGTAAACCAGAAGACGAACCATTCACTACTATGGCTGCATGGCTCCCAGGTCTATTTGTCAATCCAGCTGATGACATATGCTCTGAATATATAGGGTATTTCGAACATAGGAAAAAGATGGAGGACATTGGAGCAGGAGCCATTGAGCGGTTAGCAACCCAGAACTCTCTGGGGGGTCTACTAATGCAAGCAATGGGAAAGCAGGCAGCACCTGAGCCGCCATTGCACCTCATTCCTTCTGCAAAGCTGACTGTTAATTTAACCCCTTCAAGGGATCTGAAAGAAGCCCATGGAATTCATCAGTGGTGGAGAGACGACCTGCAATTGCTTTCTGAGGTCCACAGATACAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

359

Amino Acids

40.2

Weight (kDa)

6.64

Isoelectric Point (pI)

44.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05260 AT2G05260 AT4G10955 AT4G10955
fragaria_vesca	FvH4_5g04751 FvH4_5g04751 FvH4_5g04760
malus_domestica	MD06G1108800.v1.1 MD14G1129700.v1.1
prunus_persica	Prupe.5G121400_v2.0.a1 Prupe.5G121400_v2.0.a1 Prupe.5G121600_v2.0.a1
pyrus_communis	pycom06g10220
rosa_chinensis	RchiOBHm_Chr7g0194501 RchiOBHm_Chr7g0194511
rosa_laevigata	RLG00000004195 RLG00000004196 RLG00000023363 RLG00000023364
rosa_multiflora	Rmu_co8167496.1_g000001 Rmu_co8479523.1_g000001 Rmu_sc0041088.1_g000001 Rmu_ssc0000261.1_g000021
rosa_roxburghii	Rroxscaffold_3G00261290 Rroxscaffold_3G00261300
rosa_rugosa	Rorug07G0016000
rosa_samantha	Rh7AG143400 Rh7AG143500 Rh7BG143900 Rh7BG144000 Rh7CG147600 Rh7CG147700 Rh7DG145200 Rh7DG145300
rosa_wichuraiana	Rw7G012280 Rw7G012290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1050
AccB1I	GGYRCC	2 cut(s)	242, 326
AccB7I	CCANNNNNTGG	2 cut(s)	60, 490
AccBSI	CCGCTC	1 cut(s)	871
AccI	GTMKAC	1 cut(s)	901
AciI	CCGC	4 cut(s)	133, 569, 871, 941
AclWI	GGATC	2 cut(s)	376, 1005
AcoI	YGGCCR	1 cut(s)	481
AcsI	RAATTY	2 cut(s)	254, 1017
AgsI	TTSAA	4 cut(s)	125, 465, 565, 993
AjnI	CCWGG	2 cut(s)	489, 769
AluBI	AGCT	7 cut(s)	199, 211, 431, 479, 534, 791, 970
AluI	AGCT	7 cut(s)	199, 211, 431, 479, 534, 791, 970
Alw26I	GTCTC	3 cut(s)	276, 355, 1029
AlwI	GGATC	2 cut(s)	376, 1005
AlwNI	CAGNNNCTG	1 cut(s)	935
AoxI	GGCC	4 cut(s)	3, 152, 481, 582
ApaI	GGGCCC	1 cut(s)	156
ApeKI	GCWGC	7 cut(s)	92, 199, 685, 688, 691, 758, 929
ApoI	RAATTY	2 cut(s)	254, 1017
Asp700I	GAANNNNTTC	1 cut(s)	555
AspS9I	GGNCC	7 cut(s)	35, 130, 152, 153, 458, 583, 1060
AsuHPI	GGTGA	1 cut(s)	391
AsuII	TTCGAA	1 cut(s)	825
AsuNHI	GCTAGC	1 cut(s)	530
AvaII	GGWCC	4 cut(s)	35, 130, 458, 1060
BaeGI	GKGCMC	1 cut(s)	156
BaeI	ACNNNNGTAYC	2 cut(s)	597, 630
BalI	TGGCCA	1 cut(s)	483
BanI	GGYRCC	2 cut(s)	242, 326
BanII	GRGCYC	1 cut(s)	156
BauI	CACGAG	1 cut(s)	354
BbsI	GAAGAC	1 cut(s)	741
BbvI	GCAGC	7 cut(s)	79, 186, 697, 700, 703, 745, 941
BccI	CCATC	2 cut(s)	295, 835
BcgI	CGANNNNNNTGC	4 cut(s)	529, 563, 608, 642
BciT130I	CCWGG	2 cut(s)	491, 771
BciVI	GTATCC	1 cut(s)	598
BcoDI	GTCTC	3 cut(s)	276, 355, 1029
BfaI	CTAG	1 cut(s)	531
BfuAI	ACCTGC	1 cut(s)	1050
BfuI	GTATCC	1 cut(s)	598
BglII	AGATCT	2 cut(s)	83, 358
BisI	GCNGC	8 cut(s)	93, 200, 686, 689, 692, 759, 930, 941
BlsI	GCNGC	8 cut(s)	94, 201, 687, 690, 693, 760, 931, 942
Bme1390I	CCNGG	2 cut(s)	491, 771
Bme18I	GGWCC	4 cut(s)	35, 130, 458, 1060
BmgT120I	GGNCC	7 cut(s)	35, 130, 152, 153, 458, 583, 1060
BmiI	GGNNCC	8 cut(s)	131, 154, 155, 244, 328, 585, 767, 862
BmrFI	CCNGG	2 cut(s)	491, 771
BmsI	GCATC	1 cut(s)	85
BmtI	GCTAGC	1 cut(s)	534
BpiI	GAAGAC	1 cut(s)	741
Bpu10I	CCTNAGC	1 cut(s)	936
Bpu14I	TTCGAA	1 cut(s)	825
BpuEI	CTTGAG	1 cut(s)	383
BsaJI	CCNNGG	8 cut(s)	6, 173, 322, 489, 490, 501, 769, 1012
Bse1I	ACTGG	1 cut(s)	65
Bse3DI	GCAATG	4 cut(s)	38, 513, 921, 944
BseBI	CCWGG	2 cut(s)	491, 771
BseDI	CCNNGG	8 cut(s)	6, 173, 322, 489, 490, 501, 769, 1012
BseGI	GGATG	2 cut(s)	223, 376
BseMI	GCAATG	4 cut(s)	38, 513, 921, 944
BseMII	CTCAG	4 cut(s)	86, 360, 927, 1047
BseNI	ACTGG	1 cut(s)	65
BseRI	GAGGAG	1 cut(s)	159
BseSI	GKGCMC	1 cut(s)	156
BseXI	GCAGC	7 cut(s)	79, 186, 697, 700, 703, 745, 941
BshFI	GGCC	4 cut(s)	5, 154, 483, 584
BshNI	GGYRCC	2 cut(s)	242, 326
BslFI	GGGAC	1 cut(s)	143
BsmAI	GTCTC	3 cut(s)	276, 355, 1029
BsmBI	CGTCTC	2 cut(s)	276, 1029
BsmFI	GGGAC	1 cut(s)	143
BsnI	GGCC	4 cut(s)	5, 154, 483, 584
Bsp119I	TTCGAA	1 cut(s)	825
Bsp120I	GGGCCC	1 cut(s)	152
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp143I	GATC	4 cut(s)	83, 358, 381, 997
Bsp19I	CCATGG	2 cut(s)	501, 1012
BspACI	CCGC	4 cut(s)	133, 569, 871, 941
BspANI	GGCC	4 cut(s)	5, 154, 483, 584
BspCNI	CTCAG	4 cut(s)	85, 359, 928, 1048
BspLI	GGNNCC	8 cut(s)	131, 154, 155, 244, 328, 585, 767, 862
BspMI	ACCTGC	1 cut(s)	1050
BspOI	GCTAGC	1 cut(s)	534
BspPI	GGATC	2 cut(s)	376, 1005
BspT104I	TTCGAA	1 cut(s)	825
BspT107I	GGYRCC	2 cut(s)	242, 326
BsrBI	CCGCTC	1 cut(s)	871
BsrDI	GCAATG	4 cut(s)	38, 513, 921, 944
BsrI	ACTGG	1 cut(s)	65
BssECI	CCNNGG	8 cut(s)	6, 173, 322, 489, 490, 501, 769, 1012
BssMI	GATC	4 cut(s)	83, 358, 381, 997
BssSI	CACGAG	1 cut(s)	354
BssT1I	CCWWGG	3 cut(s)	173, 501, 1012
Bst2BI	CACGAG	1 cut(s)	354
Bst2UI	CCWGG	2 cut(s)	491, 771
Bst4CI	ACNGT	3 cut(s)	270, 284, 976
Bst6I	CTCTTC	1 cut(s)	566
BstAPI	GCANNNNNTGC	1 cut(s)	512
BstBI	TTCGAA	1 cut(s)	825
BstC8I	GCNNGC	7 cut(s)	429, 481, 513, 532, 637, 912, 927
BstDEI	CTNAG	4 cut(s)	72, 346, 936, 1056
BstDSI	CCRYGG	2 cut(s)	501, 1012
BstENI	CCTNNNNNAGG	1 cut(s)	10
BstF5I	GGATG	2 cut(s)	223, 376
BstKTI	GATC	4 cut(s)	86, 361, 384, 1000
BstMAI	GTCTC	3 cut(s)	276, 355, 1029
BstMBI	GATC	4 cut(s)	83, 358, 381, 997
BstMWI	GCNNNNNNNGC	7 cut(s)	208, 428, 512, 659, 674, 691, 946
BstNI	CCWGG	2 cut(s)	491, 771
BstSCI	CCNGG	2 cut(s)	489, 769
BstSLI	GKGCMC	1 cut(s)	156
BstV1I	GCAGC	7 cut(s)	79, 186, 697, 700, 703, 745, 941
BstV2I	GAAGAC	1 cut(s)	741
BstX2I	RGATCY	3 cut(s)	83, 358, 997
BstYI	RGATCY	3 cut(s)	83, 358, 997
BsuI	GTATCC	1 cut(s)	598
BsuRI	GGCC	4 cut(s)	5, 154, 483, 584
BtgI	CCRYGG	2 cut(s)	501, 1012
BtsCI	GGATG	2 cut(s)	223, 376
BtsI	GCAGTG	1 cut(s)	646
BtsIMutI	CAGTG	2 cut(s)	646, 1031
BveI	ACCTGC	1 cut(s)	1050
Cac8I	GCNNGC	7 cut(s)	429, 481, 513, 532, 637, 912, 927
CaiI	CAGNNNCTG	1 cut(s)	935
Cfr13I	GGNCC	7 cut(s)	35, 130, 152, 153, 458, 583, 1060
CviAII	CATG	4 cut(s)	502, 620, 762, 1013
DdeI	CTNAG	4 cut(s)	72, 346, 936, 1056
DpnI	GATC	4 cut(s)	85, 360, 383, 999
DpnII	GATC	4 cut(s)	83, 358, 381, 997
DraI	TTTAAA	1 cut(s)	259
EaeI	YGGCCR	1 cut(s)	481
Eam1104I	CTCTTC	1 cut(s)	566
EarI	CTCTTC	1 cut(s)	566
EciI	GGCGGA	1 cut(s)	558
Eco130I	CCWWGG	3 cut(s)	173, 501, 1012
Eco24I	GRGCYC	1 cut(s)	156
Eco47I	GGWCC	4 cut(s)	35, 130, 458, 1060
EcoNI	CCTNNNNNAGG	1 cut(s)	10
EcoO109I	RGGNCCY	3 cut(s)	152, 153, 458
EcoRI	GAATTC	1 cut(s)	1017
EcoRII	CCWGG	2 cut(s)	489, 769
EcoT14I	CCWWGG	3 cut(s)	173, 501, 1012
EcoT38I	GRGCYC	1 cut(s)	156
ErhI	CCWWGG	3 cut(s)	173, 501, 1012
Esp3I	CGTCTC	2 cut(s)	276, 1029
FaeI	CATG	4 cut(s)	505, 623, 765, 1016
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	4 cut(s)	501, 619, 761, 1012
FauNDI	CATATG	1 cut(s)	800
FblI	GTMKAC	1 cut(s)	901
Fnu4HI	GCNGC	8 cut(s)	93, 200, 686, 689, 692, 759, 930, 941
FokI	GGATG	2 cut(s)	230, 383
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	8 cut(s)	93, 200, 686, 689, 692, 759, 930, 941
FspBI	CTAG	1 cut(s)	531
GluI	GCNGC	8 cut(s)	93, 200, 686, 689, 692, 759, 930, 941
HaeIII	GGCC	4 cut(s)	5, 154, 483, 584
Hin1II	CATG	4 cut(s)	505, 623, 765, 1016
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	4 cut(s)	344, 551, 598, 657
HphI	GGTGA	1 cut(s)	391
Hpy166II	GTNNAC	3 cut(s)	728, 902, 1063
Hpy188I	TCNGA	8 cut(s)	10, 292, 323, 386, 437, 808, 1002, 1057
Hpy188III	TCNNGA	7 cut(s)	33, 122, 354, 362, 415, 548, 602
Hpy8I	GTNNAC	3 cut(s)	728, 902, 1063
HpyAV	CCTTC	7 cut(s)	143, 287, 328, 471, 667, 969, 999
HpyCH4III	ACNGT	3 cut(s)	270, 284, 976
HpyCH4V	TGCA	8 cut(s)	43, 427, 635, 761, 910, 949, 965, 1045
HpyF10VI	GCNNNNNNNGC	7 cut(s)	208, 428, 512, 659, 674, 691, 946
HpyF3I	CTNAG	4 cut(s)	72, 346, 936, 1056
Hsp92II	CATG	4 cut(s)	505, 623, 765, 1016
Kzo9I	GATC	4 cut(s)	83, 358, 381, 997
LmnI	GCTCC	5 cut(s)	172, 207, 771, 854, 860
Lsp1109I	GCAGC	7 cut(s)	79, 186, 697, 700, 703, 745, 941
LweI	GCATC	1 cut(s)	85
MaeI	CTAG	1 cut(s)	531
MaeIII	GTNAC	1 cut(s)	278
MalI	GATC	4 cut(s)	85, 360, 383, 999
MbiI	CCGCTC	1 cut(s)	871
MboI	GATC	4 cut(s)	83, 358, 381, 997
MboII	GAAGA	3 cut(s)	178, 553, 746
MfeI	CAATTG	1 cut(s)	1046
MflI	RGATCY	3 cut(s)	83, 358, 997
MhlI	GDGCHC	1 cut(s)	156
MlsI	TGGCCA	1 cut(s)	483
MluCI	AATT	6 cut(s)	254, 312, 541, 979, 1017, 1046
MluNI	TGGCCA	1 cut(s)	483
MlyI	GAGTC	2 cut(s)	338, 651
MmeI	TCCRAC	1 cut(s)	348
Mox20I	TGGCCA	1 cut(s)	483
MroXI	GAANNNNTTC	1 cut(s)	555
MscI	TGGCCA	1 cut(s)	483
MseI	TTAA	5 cut(s)	195, 258, 332, 978, 983
MslI	CAYNNNNRTG	2 cut(s)	506, 752
Msp20I	TGGCCA	1 cut(s)	483
MspA1I	CMGCKG	1 cut(s)	791
MspR9I	CCNGG	2 cut(s)	491, 771
MunI	CAATTG	1 cut(s)	1046
MvaI	CCWGG	2 cut(s)	491, 771
MwoI	GCNNNNNNNGC	7 cut(s)	208, 428, 512, 659, 674, 691, 946
NcoI	CCATGG	2 cut(s)	501, 1012
NdeI	CATATG	1 cut(s)	800
NdeII	GATC	4 cut(s)	83, 358, 381, 997
NheI	GCTAGC	1 cut(s)	530
NlaIII	CATG	4 cut(s)	505, 623, 765, 1016
NlaIV	GGNNCC	8 cut(s)	131, 154, 155, 244, 328, 585, 767, 862
NspV	TTCGAA	1 cut(s)	825
PasI	CCCWGGG	1 cut(s)	490
PdmI	GAANNNNTTC	1 cut(s)	555
PfeI	GAWTC	2 cut(s)	551, 598
PflFI	GACNNNGTC	1 cut(s)	347
PflMI	CCANNNNNTGG	2 cut(s)	60, 490
PkrI	GCNGC	8 cut(s)	94, 201, 687, 690, 693, 760, 931, 942
PleI	GAGTC	2 cut(s)	338, 651
PpsI	GAGTC	2 cut(s)	338, 651
PpuMI	RGGWCCY	1 cut(s)	458
Psp5II	RGGWCCY	1 cut(s)	458
Psp6I	CCWGG	2 cut(s)	489, 769
PspGI	CCWGG	2 cut(s)	489, 769
PspN4I	GGNNCC	8 cut(s)	131, 154, 155, 244, 328, 585, 767, 862
PspOMI	GGGCCC	1 cut(s)	152
PspPI	GGNCC	7 cut(s)	35, 130, 152, 153, 458, 583, 1060
PspPPI	RGGWCCY	1 cut(s)	458
PstNI	CAGNNNCTG	1 cut(s)	935
PsuI	RGATCY	3 cut(s)	83, 358, 997
PsyI	GACNNNGTC	1 cut(s)	347
PvuII	CAGCTG	1 cut(s)	791
RseI	CAYNNNNRTG	2 cut(s)	506, 752
SaqAI	TTAA	5 cut(s)	195, 258, 332, 978, 983
SatI	GCNGC	8 cut(s)	93, 200, 686, 689, 692, 759, 930, 941
Sau3AI	GATC	4 cut(s)	83, 358, 381, 997
Sau96I	GGNCC	7 cut(s)	35, 130, 152, 153, 458, 583, 1060
SchI	GAGTC	2 cut(s)	338, 651
ScrFI	CCNGG	2 cut(s)	491, 771
SduI	GDGCHC	1 cut(s)	156
SfaNI	GCATC	1 cut(s)	85
SfuI	TTCGAA	1 cut(s)	825
SinI	GGWCC	4 cut(s)	35, 130, 458, 1060
SmiMI	CAYNNNNRTG	2 cut(s)	506, 752
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
Sse9I	AATT	6 cut(s)	254, 312, 541, 979, 1017, 1046
SsiI	CCGC	4 cut(s)	133, 569, 871, 941
SspMI	CTAG	1 cut(s)	531
StyD4I	CCNGG	2 cut(s)	489, 769
StyI	CCWWGG	3 cut(s)	173, 501, 1012
TaaI	ACNGT	3 cut(s)	270, 284, 976
TaqI	TCGA	4 cut(s)	24, 414, 549, 825
TasI	AATT	6 cut(s)	254, 312, 541, 979, 1017, 1046
TauI	GCSGC	1 cut(s)	943
TfiI	GAWTC	2 cut(s)	551, 598
Tru1I	TTAA	5 cut(s)	195, 258, 332, 978, 983
Tru9I	TTAA	5 cut(s)	195, 258, 332, 978, 983
TscAI	CASTG	2 cut(s)	646, 1031
TseI	GCWGC	7 cut(s)	92, 199, 685, 688, 691, 758, 929
TspDTI	ATGAA	2 cut(s)	686, 1010
TspGWI	ACGGA	1 cut(s)	194
TspRI	CASTG	2 cut(s)	646, 1031
Tth111I	GACNNNGTC	1 cut(s)	347
Van91I	CCANNNNNTGG	2 cut(s)	60, 490
VpaK11BI	GGWCC	4 cut(s)	35, 130, 458, 1060
XagI	CCTNNNNNAGG	1 cut(s)	10
XapI	RAATTY	2 cut(s)	254, 1017
XmiI	GTMKAC	1 cut(s)	901
XmnI	GAANNNNTTC	1 cut(s)	555
XspI	CTAG	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.