Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0003376

Physical Location & Seq

Genomic Coordinates Reverse (-)

22566647 .. 22567174

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023363

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGCCAAGAATGGCGTTTTTCTCAAATCTTTTCTCTTTAATCCACCGTTTGTTTCTGCCCCAGTAGAGAGGATTAAGGATGAGAATGTGAAGCATGGGATTCGGTTTGCGAGAAGCATAATTACTGCAGGCCTCACTTTGGCCTGGATGGCTAAACAACAGCAACATCAGGGACATCGGTCAGTTGAAGACCCATTCATTACTCTATCTTCATGGTTCCCTAATCTGTTTGTCAATCTAGGCGATGACACCTGCTCGGAATATATTGGTTATTTTGAGCATAGGAAAAGGATGGAGCAGATAGGAGTTGGGGCCGTCGAGAGTCTAGCTACCCAGAATTCGCTCGGAGGTCTACTAATGAATGCAATGGGAAAAACCTTAGATTATGAGCCTGCATTGCACATCATTCCTTCTGCCAACCTGACCGTTAATTTAACCCCTCCGCCGGATCTCAAAGAAGCTCATGGAATTCAGCAATGGTGGGCAAACAACATGCAGTTGAAGTCTGAGGTCCACAGATTTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

176

Amino Acids

19.73

Weight (kDa)

6.65

Isoelectric Point (pI)

34.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05260 AT2G05260 AT4G10955 AT4G10955
fragaria_vesca	FvH4_5g04751 FvH4_5g04751 FvH4_5g04760
malus_domestica	MD06G1108800.v1.1 MD14G1129700.v1.1
prunus_persica	Prupe.5G121400_v2.0.a1 Prupe.5G121400_v2.0.a1 Prupe.5G121600_v2.0.a1
pyrus_communis	pycom06g10220
rosa_chinensis	RchiOBHm_Chr7g0194501 RchiOBHm_Chr7g0194511
rosa_laevigata	RLG00000004195 RLG00000004196 RLG00000023363 RLG00000023364
rosa_multiflora	Rmu_co8167496.1_g000001 Rmu_co8479523.1_g000001 Rmu_sc0041088.1_g000001 Rmu_ssc0000261.1_g000021
rosa_roxburghii	Rroxscaffold_3G00261290 Rroxscaffold_3G00261300
rosa_rugosa	Rorug07G0016000
rosa_samantha	Rh7AG143400 Rh7AG143500 Rh7BG143900 Rh7BG144000 Rh7CG147600 Rh7CG147700 Rh7DG145200 Rh7DG145300
rosa_wichuraiana	Rw7G012280 Rw7G012290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	260
Acc36I	ACCTGC	1 cut(s)	260
AccI	GTMKAC	1 cut(s)	352
AciI	CCGC	1 cut(s)	443
AclWI	GGATC	1 cut(s)	456
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	337, 468
AfiI	CCNNNNNNNGG	2 cut(s)	139, 445
AgsI	TTSAA	2 cut(s)	188, 502
AjnI	CCWGG	1 cut(s)	143
AluBI	AGCT	2 cut(s)	329, 461
AluI	AGCT	2 cut(s)	329, 461
AlwI	GGATC	1 cut(s)	456
AoxI	GGCC	4 cut(s)	3, 130, 141, 312
ApoI	RAATTY	2 cut(s)	337, 468
AspS9I	GGNCC	2 cut(s)	312, 511
AvaII	GGWCC	1 cut(s)	511
BalI	TGGCCA	1 cut(s)	5
BarI	GAAGNNNNNNTAC	2 cut(s)	106, 138
BbsI	GAAGAC	1 cut(s)	195
BccI	CCATC	2 cut(s)	142, 286
BceAI	ACGGC	1 cut(s)	299
BcgI	CGANNNNNNTGC	2 cut(s)	83, 117
BciT130I	CCWGG	1 cut(s)	145
BfaI	CTAG	2 cut(s)	239, 326
BfmI	CTRYAG	1 cut(s)	126
BfuAI	ACCTGC	1 cut(s)	260
BglI	GCCNNNNNGGC	1 cut(s)	149
Bme1390I	CCNGG	1 cut(s)	145
Bme18I	GGWCC	1 cut(s)	511
BmgT120I	GGNCC	2 cut(s)	312, 511
BmiI	GGNNCC	2 cut(s)	218, 313
BmrFI	CCNGG	1 cut(s)	145
BmrI	ACTGGG	1 cut(s)	56
BmuI	ACTGGG	1 cut(s)	56
BoxI	GACNNNNGTC	1 cut(s)	178
BpiI	GAAGAC	1 cut(s)	195
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 445
Bse1I	ACTGG	1 cut(s)	62
Bse3DI	GCAATG	3 cut(s)	372, 395, 482
BseBI	CCWGG	1 cut(s)	145
BseGI	GGATG	3 cut(s)	85, 153, 297
BseLI	CCNNNNNNNGG	2 cut(s)	139, 445
BseMI	GCAATG	3 cut(s)	372, 395, 482
BseMII	CTCAG	1 cut(s)	498
BseNI	ACTGG	1 cut(s)	62
BshFI	GGCC	4 cut(s)	5, 132, 143, 314
BsiSI	CCGG	1 cut(s)	446
BslFI	GGGAC	1 cut(s)	186
BslI	CCNNNNNNNGG	2 cut(s)	139, 445
BsmFI	GGGAC	1 cut(s)	186
BsmI	GAATGC	1 cut(s)	367
BsnI	GGCC	4 cut(s)	5, 132, 143, 314
Bsp143I	GATC	1 cut(s)	448
BspACI	CCGC	1 cut(s)	443
BspANI	GGCC	4 cut(s)	5, 132, 143, 314
BspCNI	CTCAG	1 cut(s)	499
BspLI	GGNNCC	2 cut(s)	218, 313
BspMAI	CTGCAG	1 cut(s)	130
BspMI	ACCTGC	1 cut(s)	260
BspPI	GGATC	1 cut(s)	456
BsrDI	GCAATG	3 cut(s)	372, 395, 482
BsrI	ACTGG	1 cut(s)	62
BssMI	GATC	1 cut(s)	448
Bst2UI	CCWGG	1 cut(s)	145
Bst4CI	ACNGT	2 cut(s)	48, 427
BstC8I	GCNNGC	2 cut(s)	130, 393
BstDEI	CTNAG	2 cut(s)	379, 507
BstF5I	GGATG	3 cut(s)	85, 153, 297
BstKTI	GATC	1 cut(s)	451
BstMBI	GATC	1 cut(s)	448
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 397
BstNI	CCWGG	1 cut(s)	145
BstNSI	RCATGY	1 cut(s)	496
BstPAI	GACNNNNGTC	1 cut(s)	178
BstSCI	CCNGG	1 cut(s)	143
BstSFI	CTRYAG	1 cut(s)	126
BstV2I	GAAGAC	1 cut(s)	195
BstX2I	RGATCY	1 cut(s)	448
BstYI	RGATCY	1 cut(s)	448
BsuRI	GGCC	4 cut(s)	5, 132, 143, 314
BtgZI	GCGATG	1 cut(s)	258
BtsCI	GGATG	3 cut(s)	85, 153, 297
BveI	ACCTGC	1 cut(s)	260
Cac8I	GCNNGC	2 cut(s)	130, 393
Cfr13I	GGNCC	2 cut(s)	312, 511
CviAII	CATG	4 cut(s)	95, 213, 464, 493
CviJI	RGCY	8 cut(s)	5, 132, 143, 152, 314, 329, 391, 461
CviKI_1	RGCY	8 cut(s)	5, 132, 143, 152, 314, 329, 391, 461
DdeI	CTNAG	2 cut(s)	379, 507
DpnI	GATC	1 cut(s)	450
DpnII	GATC	1 cut(s)	448
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	432
Eco147I	AGGCCT	1 cut(s)	132
Eco47I	GGWCC	1 cut(s)	511
EcoRI	GAATTC	2 cut(s)	337, 468
EcoRII	CCWGG	1 cut(s)	143
FaeI	CATG	4 cut(s)	98, 216, 467, 496
FaiI	YATR	8 cut(s)	96, 119, 214, 264, 282, 387, 465, 494
FaqI	GGGAC	1 cut(s)	186
FatI	CATG	4 cut(s)	94, 212, 463, 492
FblI	GTMKAC	1 cut(s)	352
FokI	GGATG	3 cut(s)	92, 160, 304
FspBI	CTAG	2 cut(s)	239, 326
HaeIII	GGCC	4 cut(s)	5, 132, 143, 314
HapII	CCGG	1 cut(s)	446
Hin1II	CATG	4 cut(s)	98, 216, 467, 496
HinfI	GANTC	2 cut(s)	100, 322
HpaII	CCGG	1 cut(s)	446
Hpy166II	GTNNAC	2 cut(s)	353, 514
Hpy188I	TCNGA	3 cut(s)	259, 347, 508
Hpy188III	TCNNGA	1 cut(s)	319
Hpy8I	GTNNAC	2 cut(s)	353, 514
Hpy99I	CGWCG	1 cut(s)	320
HpyAV	CCTTC	1 cut(s)	420
HpyCH4III	ACNGT	2 cut(s)	48, 427
HpyCH4V	TGCA	5 cut(s)	128, 365, 395, 400, 496
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 397
HpyF3I	CTNAG	2 cut(s)	379, 507
Hsp92II	CATG	4 cut(s)	98, 216, 467, 496
Kzo9I	GATC	1 cut(s)	448
LmnI	GCTCC	1 cut(s)	295
MaeI	CTAG	2 cut(s)	239, 326
MalI	GATC	1 cut(s)	450
MboI	GATC	1 cut(s)	448
MboII	GAAGA	2 cut(s)	200, 201
MflI	RGATCY	1 cut(s)	448
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	120, 337, 430, 468
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	331
MnlI	CCTC	5 cut(s)	63, 143, 341, 450, 502
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	39, 75, 429, 434
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	446
MspR9I	CCNGG	1 cut(s)	145
Mva1269I	GAATGC	1 cut(s)	367
MvaI	CCWGG	1 cut(s)	145
MwoI	GCNNNNNNNGC	2 cut(s)	149, 397
NdeII	GATC	1 cut(s)	448
NlaIII	CATG	4 cut(s)	98, 216, 467, 496
NlaIV	GGNNCC	2 cut(s)	218, 313
NspI	RCATGY	1 cut(s)	496
PaqCI	CACCTGC	1 cut(s)	260
PceI	AGGCCT	1 cut(s)	132
PctI	GAATGC	1 cut(s)	367
PfeI	GAWTC	1 cut(s)	100
PleI	GAGTC	1 cut(s)	330
PpsI	GAGTC	1 cut(s)	330
PshAI	GACNNNNGTC	1 cut(s)	178
Psp6I	CCWGG	1 cut(s)	143
PspGI	CCWGG	1 cut(s)	143
PspN4I	GGNNCC	2 cut(s)	218, 313
PspPI	GGNCC	2 cut(s)	312, 511
PstI	CTGCAG	1 cut(s)	130
PsuI	RGATCY	1 cut(s)	448
SaqAI	TTAA	4 cut(s)	39, 75, 429, 434
Sau3AI	GATC	1 cut(s)	448
Sau96I	GGNCC	2 cut(s)	312, 511
SchI	GAGTC	1 cut(s)	331
ScrFI	CCNGG	1 cut(s)	145
SetI	ASST	7 cut(s)	254, 331, 352, 380, 423, 463, 513
SfcI	CTRYAG	1 cut(s)	126
SinI	GGWCC	1 cut(s)	511
Sse9I	AATT	4 cut(s)	120, 337, 430, 468
SseBI	AGGCCT	1 cut(s)	132
SsiI	CCGC	1 cut(s)	443
SspMI	CTAG	2 cut(s)	239, 326
StuI	AGGCCT	1 cut(s)	132
StyD4I	CCNGG	1 cut(s)	143
TaaI	ACNGT	2 cut(s)	48, 427
TaqI	TCGA	1 cut(s)	318
TaqII	GACCGA	1 cut(s)	168
TasI	AATT	4 cut(s)	120, 337, 430, 468
TfiI	GAWTC	1 cut(s)	100
Tru1I	TTAA	4 cut(s)	39, 75, 429, 434
Tru9I	TTAA	4 cut(s)	39, 75, 429, 434
TspDTI	ATGAA	3 cut(s)	187, 201, 374
VpaK11BI	GGWCC	1 cut(s)	511
XapI	RAATTY	2 cut(s)	337, 468
XceI	RCATGY	1 cut(s)	496
XmiI	GTMKAC	1 cut(s)	352
XspI	CTAG	2 cut(s)	239, 326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.