Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0003376

Physical Location & Seq

Genomic Coordinates Forward (+)

20749413 .. 20752131

Gene Structure 2719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1129700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGCGTCGGGGAGGGAAAGTTTCGACCTTTCAGGACCATTGCTCCTAACGTCCATTGACTGGCAGAATACTCAGCATCAAAGATCTGTTGCTGCCTGTTTGGTTCAGGGTGTCTACGTTCTTGAACGGGACCGCCAAGAGGAACGAGAAGGGCCCCAGGCCCTTGCTCCTCCTTGGTGGGAGTTCTTCCATTTTAAGCTGCTCCGTAAGCTTGTGGATGATGTTGGTTTCTCCATCTTTGGTGCCGTATATGAGTTTAAACCTCCACCCTCTCTTTGTAACCATCCATCGGAAGGAAGCCCTTGTTATGTAATTGCTTTCCGAGGCACCATAACGAAGTATGACTCAGTCTCACGAGATCTTGAGCTGGATGTTGAGGTGATCCGAAATGGACTGCACAGGACATCTCGCTTCGAGATTGCTATGCAAGCTGTCCGAAATATGGTTGCTGCATCAGGTCCTTCAAATGTTTGGTTAGCTGGCCACTCCTTGGGGTCAGCCATGGCAATGCTTGCTGGAAAAACTATGGCTAGCTCTGGCAATTATCTCAAATCTTTTCTCTTCAATCCGCCATTTGTGTCGGCCCCAATAGAGAGGATTAAGGATAAGAGAGTGAAGCATGGGCTTCGGATTGCAGGCAGTGTGATTACTGCAGGACTCACTCTTGCTATGAAGGCTAAACAACAACAACATCATCAACACAGAAGTCGACCAGAAAATGAACCATTCACTGCTCTAGCTGCATGGTTCCCTGGTCTATTTGTCAATCCATCTGATGACATCTGCTCTGAATATATCGGGTATTTCGAACACAGGAAGAAGATGGAGGACATTGGAGCAGGGGCCATTGAGAGGTTAGCAACTCAGAATTCTCTAGGGGGTCTACTGATGCATGTGATGGGAAAGAAAGCAGCGCCCGAGCCCCCATTGCACCTCATTCCTTCGGCGAACCTGACAGTTAATTTAACCCCTTCAAGGGATCTGAAAGAAGCCCATGGAATTCATCAATGGTGGAGAGACGACCTGCAATTGCTTTCCGAGGTCCACAAATACAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

353

Amino Acids

39.33

Weight (kDa)

8.58

Isoelectric Point (pI)

41.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05260 AT2G05260 AT4G10955 AT4G10955
fragaria_vesca	FvH4_5g04751 FvH4_5g04751 FvH4_5g04760
malus_domestica	MD06G1108800.v1.1 MD14G1129700.v1.1
prunus_persica	Prupe.5G121400_v2.0.a1 Prupe.5G121400_v2.0.a1 Prupe.5G121600_v2.0.a1
pyrus_communis	pycom06g10220
rosa_chinensis	RchiOBHm_Chr7g0194501 RchiOBHm_Chr7g0194511
rosa_laevigata	RLG00000004195 RLG00000004196 RLG00000023363 RLG00000023364
rosa_multiflora	Rmu_co8167496.1_g000001 Rmu_co8479523.1_g000001 Rmu_sc0041088.1_g000001 Rmu_ssc0000261.1_g000021
rosa_roxburghii	Rroxscaffold_3G00261290 Rroxscaffold_3G00261300
rosa_rugosa	Rorug07G0016000
rosa_samantha	Rh7AG143400 Rh7AG143500 Rh7BG143900 Rh7BG144000 Rh7CG147600 Rh7CG147700 Rh7DG145200 Rh7DG145300
rosa_wichuraiana	Rw7G012280 Rw7G012290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1032
AccB1I	GGYRCC	2 cut(s)	242, 326
AccB7I	CCANNNNNTGG	2 cut(s)	60, 490
AccI	GTMKAC	3 cut(s)	114, 709, 883
AciI	CCGC	2 cut(s)	133, 569
AclWI	GGATC	2 cut(s)	376, 987
AcoI	YGGCCR	1 cut(s)	481
AcsI	RAATTY	2 cut(s)	868, 999
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	9 cut(s)	60, 139, 289, 293, 442, 490, 852, 975, 976
AgsI	TTSAA	4 cut(s)	125, 465, 565, 975
AjnI	CCWGG	2 cut(s)	156, 751
AluBI	AGCT	7 cut(s)	199, 211, 367, 431, 479, 534, 740
AluI	AGCT	7 cut(s)	199, 211, 367, 431, 479, 534, 740
Alw26I	GTCTC	2 cut(s)	355, 1011
AlwI	GGATC	2 cut(s)	376, 987
Ama87I	CYCGRG	1 cut(s)	917
AoxI	GGCC	5 cut(s)	152, 159, 481, 582, 843
ApaI	GGGCCC	1 cut(s)	156
ApeKI	GCWGC	5 cut(s)	92, 199, 449, 740, 911
ApoI	RAATTY	2 cut(s)	868, 999
AspLEI	GCGC	1 cut(s)	916
AspS9I	GGNCC	9 cut(s)	35, 130, 152, 153, 160, 458, 583, 843, 1042
AsuHPI	GGTGA	1 cut(s)	391
AsuII	TTCGAA	1 cut(s)	807
AsuNHI	GCTAGC	1 cut(s)	530
AvaI	CYCGRG	1 cut(s)	917
AvaII	GGWCC	4 cut(s)	35, 130, 458, 1042
BaeGI	GKGCMC	1 cut(s)	156
BalI	TGGCCA	1 cut(s)	483
BanI	GGYRCC	2 cut(s)	242, 326
BanII	GRGCYC	2 cut(s)	156, 924
BauI	CACGAG	1 cut(s)	354
BbvI	GCAGC	5 cut(s)	79, 186, 436, 727, 923
BccI	CCATC	6 cut(s)	242, 291, 295, 778, 817, 892
BceAI	ACGGC	1 cut(s)	230
BcgI	CGANNNNNNTGC	2 cut(s)	608, 642
BciT130I	CCWGG	2 cut(s)	158, 753
BcoDI	GTCTC	2 cut(s)	355, 1011
BfaI	CTAG	3 cut(s)	531, 737, 875
BfmI	CTRYAG	1 cut(s)	651
BfoI	RGCGCY	1 cut(s)	917
BfuAI	ACCTGC	1 cut(s)	1032
BglII	AGATCT	2 cut(s)	83, 358
BisI	GCNGC	5 cut(s)	93, 200, 450, 741, 912
BlsI	GCNGC	5 cut(s)	94, 201, 451, 742, 913
Bme1390I	CCNGG	2 cut(s)	158, 753
Bme18I	GGWCC	4 cut(s)	35, 130, 458, 1042
BmeT110I	CYCGRG	1 cut(s)	917
BmgT120I	GGNCC	9 cut(s)	35, 130, 152, 153, 160, 458, 583, 843, 1042
BmiI	GGNNCC	8 cut(s)	131, 154, 155, 244, 328, 585, 749, 844
BmrFI	CCNGG	2 cut(s)	158, 753
BmsI	GCATC	3 cut(s)	85, 461, 879
BmtI	GCTAGC	1 cut(s)	534
Bpu14I	TTCGAA	1 cut(s)	807
BpuEI	CTTGAG	1 cut(s)	383
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	8 cut(s)	156, 173, 322, 489, 501, 751, 994, 1038
BsaXI	ACNNNNNCTCC	3 cut(s)	27, 34, 57
Bsc4I	CCNNNNNNNGG	9 cut(s)	60, 139, 289, 293, 442, 490, 852, 975, 976
Bse1I	ACTGG	1 cut(s)	65
Bse3DI	GCAATG	3 cut(s)	38, 513, 926
BseBI	CCWGG	2 cut(s)	158, 753
BseDI	CCNNGG	8 cut(s)	156, 173, 322, 489, 501, 751, 994, 1038
BseGI	GGATG	3 cut(s)	223, 283, 376
BseLI	CCNNNNNNNGG	9 cut(s)	60, 139, 289, 293, 442, 490, 852, 975, 976
BseMI	GCAATG	3 cut(s)	38, 513, 926
BseMII	CTCAG	3 cut(s)	86, 360, 878
BseNI	ACTGG	1 cut(s)	65
BseRI	GAGGAG	1 cut(s)	159
BseSI	GKGCMC	1 cut(s)	156
BseXI	GCAGC	5 cut(s)	79, 186, 436, 727, 923
BsgI	GTGCAG	1 cut(s)	380
BshFI	GGCC	5 cut(s)	154, 161, 483, 584, 845
BshNI	GGYRCC	2 cut(s)	242, 326
BsiHKCI	CYCGRG	1 cut(s)	917
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	9 cut(s)	60, 139, 289, 293, 442, 490, 852, 975, 976
BsmAI	GTCTC	2 cut(s)	355, 1011
BsmBI	CGTCTC	1 cut(s)	1011
BsmFI	GGGAC	1 cut(s)	143
BsnI	GGCC	5 cut(s)	154, 161, 483, 584, 845
BsoBI	CYCGRG	1 cut(s)	917
Bsp119I	TTCGAA	1 cut(s)	807
Bsp120I	GGGCCC	1 cut(s)	152
Bsp1286I	GDGCHC	2 cut(s)	156, 924
Bsp143I	GATC	4 cut(s)	83, 358, 381, 979
Bsp19I	CCATGG	2 cut(s)	501, 994
BspACI	CCGC	2 cut(s)	133, 569
BspANI	GGCC	5 cut(s)	154, 161, 483, 584, 845
BspCNI	CTCAG	3 cut(s)	85, 359, 877
BspLI	GGNNCC	8 cut(s)	131, 154, 155, 244, 328, 585, 749, 844
BspMAI	CTGCAG	1 cut(s)	655
BspMI	ACCTGC	1 cut(s)	1032
BspOI	GCTAGC	1 cut(s)	534
BspPI	GGATC	2 cut(s)	376, 987
BspT104I	TTCGAA	1 cut(s)	807
BspT107I	GGYRCC	2 cut(s)	242, 326
BsrDI	GCAATG	3 cut(s)	38, 513, 926
BsrI	ACTGG	1 cut(s)	65
BssECI	CCNNGG	8 cut(s)	156, 173, 322, 489, 501, 751, 994, 1038
BssMI	GATC	4 cut(s)	83, 358, 381, 979
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	354
BssT1I	CCWWGG	4 cut(s)	173, 489, 501, 994
Bst2BI	CACGAG	1 cut(s)	354
Bst2UI	CCWGG	2 cut(s)	158, 753
Bst4CI	ACNGT	1 cut(s)	958
Bst6I	CTCTTC	1 cut(s)	566
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	512
BstBI	TTCGAA	1 cut(s)	807
BstC8I	GCNNGC	5 cut(s)	429, 481, 513, 532, 637
BstDEI	CTNAG	3 cut(s)	72, 346, 864
BstDSI	CCRYGG	2 cut(s)	501, 994
BstF5I	GGATG	3 cut(s)	223, 283, 376
BstH2I	RGCGCY	1 cut(s)	917
BstHHI	GCGC	1 cut(s)	916
BstKTI	GATC	4 cut(s)	86, 361, 384, 982
BstMAI	GTCTC	2 cut(s)	355, 1011
BstMBI	GATC	4 cut(s)	83, 358, 381, 979
BstMWI	GCNNNNNNNGC	6 cut(s)	208, 428, 512, 674, 740, 928
BstNI	CCWGG	2 cut(s)	158, 753
BstNSI	RCATGY	1 cut(s)	896
BstSCI	CCNGG	2 cut(s)	156, 751
BstSFI	CTRYAG	1 cut(s)	651
BstSLI	GKGCMC	1 cut(s)	156
BstV1I	GCAGC	5 cut(s)	79, 186, 436, 727, 923
BstX2I	RGATCY	3 cut(s)	83, 358, 979
BstYI	RGATCY	3 cut(s)	83, 358, 979
BsuRI	GGCC	5 cut(s)	154, 161, 483, 584, 845
BtgI	CCRYGG	2 cut(s)	501, 994
BtsCI	GGATG	3 cut(s)	223, 283, 376
BtsI	GCAGTG	2 cut(s)	646, 729
BtsIMutI	CAGTG	2 cut(s)	646, 729
BveI	ACCTGC	1 cut(s)	1032
Cac8I	GCNNGC	5 cut(s)	429, 481, 513, 532, 637
CfoI	GCGC	1 cut(s)	916
Cfr13I	GGNCC	9 cut(s)	35, 130, 152, 153, 160, 458, 583, 843, 1042
CviAII	CATG	5 cut(s)	502, 620, 744, 893, 995
DdeI	CTNAG	3 cut(s)	72, 346, 864
DpnI	GATC	4 cut(s)	85, 360, 383, 981
DpnII	GATC	4 cut(s)	83, 358, 381, 979
DraI	TTTAAA	1 cut(s)	259
EaeI	YGGCCR	1 cut(s)	481
Eam1104I	CTCTTC	1 cut(s)	566
EarI	CTCTTC	1 cut(s)	566
EciI	GGCGGA	1 cut(s)	558
Eco130I	CCWWGG	4 cut(s)	173, 489, 501, 994
Eco24I	GRGCYC	2 cut(s)	156, 924
Eco47I	GGWCC	4 cut(s)	35, 130, 458, 1042
Eco88I	CYCGRG	1 cut(s)	917
EcoO109I	RGGNCCY	4 cut(s)	152, 153, 160, 458
EcoRI	GAATTC	2 cut(s)	868, 999
EcoRII	CCWGG	2 cut(s)	156, 751
EcoT14I	CCWWGG	4 cut(s)	173, 489, 501, 994
EcoT22I	ATGCAT	1 cut(s)	894
EcoT38I	GRGCYC	2 cut(s)	156, 924
ErhI	CCWWGG	4 cut(s)	173, 489, 501, 994
Esp3I	CGTCTC	1 cut(s)	1011
FaeI	CATG	5 cut(s)	505, 623, 747, 896, 998
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	5 cut(s)	501, 619, 743, 892, 994
FblI	GTMKAC	3 cut(s)	114, 709, 883
Fnu4HI	GCNGC	5 cut(s)	93, 200, 450, 741, 912
FokI	GGATG	3 cut(s)	230, 270, 383
FriOI	GRGCYC	2 cut(s)	156, 924
Fsp4HI	GCNGC	5 cut(s)	93, 200, 450, 741, 912
FspBI	CTAG	3 cut(s)	531, 737, 875
GlaI	GCGC	1 cut(s)	915
GluI	GCNGC	5 cut(s)	93, 200, 450, 741, 912
HaeII	RGCGCY	1 cut(s)	917
HaeIII	GGCC	5 cut(s)	154, 161, 483, 584, 845
HhaI	GCGC	1 cut(s)	916
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	5 cut(s)	505, 623, 747, 896, 998
Hin6I	GCGC	1 cut(s)	914
HinP1I	GCGC	1 cut(s)	914
HincII	GTYRAC	1 cut(s)	710
HindII	GTYRAC	1 cut(s)	710
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	2 cut(s)	344, 657
HphI	GGTGA	1 cut(s)	391
Hpy166II	GTNNAC	4 cut(s)	115, 710, 884, 1045
Hpy188III	TCNNGA	5 cut(s)	33, 122, 354, 362, 415
Hpy8I	GTNNAC	4 cut(s)	115, 710, 884, 1045
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	6 cut(s)	143, 287, 471, 667, 951, 981
HpyCH4III	ACNGT	1 cut(s)	958
HpyCH4IV	ACGT	2 cut(s)	50, 117
HpyCH4V	TGCA	9 cut(s)	397, 427, 452, 635, 653, 743, 892, 931, 1027
HpyF10VI	GCNNNNNNNGC	6 cut(s)	208, 428, 512, 674, 740, 928
HpyF3I	CTNAG	3 cut(s)	72, 346, 864
HpySE526I	ACGT	2 cut(s)	50, 117
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	5 cut(s)	505, 623, 747, 896, 998
HspAI	GCGC	1 cut(s)	914
Kzo9I	GATC	4 cut(s)	83, 358, 381, 979
LmnI	GCTCC	4 cut(s)	48, 172, 207, 836
Lsp1109I	GCAGC	5 cut(s)	79, 186, 436, 727, 923
LweI	GCATC	3 cut(s)	85, 461, 879
MaeI	CTAG	3 cut(s)	531, 737, 875
MaeII	ACGT	2 cut(s)	50, 117
MaeIII	GTNAC	1 cut(s)	278
MalI	GATC	4 cut(s)	85, 360, 383, 981
MboI	GATC	4 cut(s)	83, 358, 381, 979
MboII	GAAGA	4 cut(s)	178, 553, 829, 832
MfeI	CAATTG	1 cut(s)	1028
MflI	RGATCY	3 cut(s)	83, 358, 979
MhlI	GDGCHC	2 cut(s)	156, 924
MlsI	TGGCCA	1 cut(s)	483
MluCI	AATT	6 cut(s)	312, 541, 868, 961, 999, 1028
MluNI	TGGCCA	1 cut(s)	483
MlyI	GAGTC	2 cut(s)	338, 651
Mox20I	TGGCCA	1 cut(s)	483
Mph1103I	ATGCAT	1 cut(s)	894
MscI	TGGCCA	1 cut(s)	483
MseI	TTAA	5 cut(s)	195, 258, 600, 960, 965
MslI	CAYNNNNRTG	1 cut(s)	506
Msp20I	TGGCCA	1 cut(s)	483
MspR9I	CCNGG	2 cut(s)	158, 753
MssI	GTTTAAAC	1 cut(s)	259
MunI	CAATTG	1 cut(s)	1028
MvaI	CCWGG	2 cut(s)	158, 753
MwoI	GCNNNNNNNGC	6 cut(s)	208, 428, 512, 674, 740, 928
NcoI	CCATGG	2 cut(s)	501, 994
NdeII	GATC	4 cut(s)	83, 358, 381, 979
NheI	GCTAGC	1 cut(s)	530
NlaIII	CATG	5 cut(s)	505, 623, 747, 896, 998
NlaIV	GGNNCC	8 cut(s)	131, 154, 155, 244, 328, 585, 749, 844
NsiI	ATGCAT	1 cut(s)	894
NspI	RCATGY	1 cut(s)	896
NspV	TTCGAA	1 cut(s)	807
PcsI	WCGNNNNNNNCGW	1 cut(s)	804
PflFI	GACNNNGTC	1 cut(s)	347
PflMI	CCANNNNNTGG	2 cut(s)	60, 490
PkrI	GCNGC	5 cut(s)	94, 201, 451, 742, 913
PleI	GAGTC	2 cut(s)	338, 651
PmeI	GTTTAAAC	1 cut(s)	259
PpsI	GAGTC	2 cut(s)	338, 651
PpuMI	RGGWCCY	1 cut(s)	458
Psp5II	RGGWCCY	1 cut(s)	458
Psp6I	CCWGG	2 cut(s)	156, 751
PspGI	CCWGG	2 cut(s)	156, 751
PspN4I	GGNNCC	8 cut(s)	131, 154, 155, 244, 328, 585, 749, 844
PspOMI	GGGCCC	1 cut(s)	152
PspPI	GGNCC	9 cut(s)	35, 130, 152, 153, 160, 458, 583, 843, 1042
PspPPI	RGGWCCY	1 cut(s)	458
PstI	CTGCAG	1 cut(s)	655
PsuI	RGATCY	3 cut(s)	83, 358, 979
PsyI	GACNNNGTC	1 cut(s)	347
RseI	CAYNNNNRTG	1 cut(s)	506
SalI	GTCGAC	1 cut(s)	708
SaqAI	TTAA	5 cut(s)	195, 258, 600, 960, 965
SatI	GCNGC	5 cut(s)	93, 200, 450, 741, 912
Sau3AI	GATC	4 cut(s)	83, 358, 381, 979
Sau96I	GGNCC	9 cut(s)	35, 130, 152, 153, 160, 458, 583, 843, 1042
SchI	GAGTC	2 cut(s)	338, 651
ScrFI	CCNGG	2 cut(s)	158, 753
SduI	GDGCHC	2 cut(s)	156, 924
SfaNI	GCATC	3 cut(s)	85, 461, 879
SfcI	CTRYAG	1 cut(s)	651
SfuI	TTCGAA	1 cut(s)	807
SinI	GGWCC	4 cut(s)	35, 130, 458, 1042
SmiMI	CAYNNNNRTG	1 cut(s)	506
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
Sse9I	AATT	6 cut(s)	312, 541, 868, 961, 999, 1028
SsiI	CCGC	2 cut(s)	133, 569
SspMI	CTAG	3 cut(s)	531, 737, 875
StyD4I	CCNGG	2 cut(s)	156, 751
StyI	CCWWGG	4 cut(s)	173, 489, 501, 994
TaaI	ACNGT	1 cut(s)	958
TaiI	ACGT	2 cut(s)	53, 120
TaqI	TCGA	4 cut(s)	24, 414, 709, 807
TasI	AATT	6 cut(s)	312, 541, 868, 961, 999, 1028
Tru1I	TTAA	5 cut(s)	195, 258, 600, 960, 965
Tru9I	TTAA	5 cut(s)	195, 258, 600, 960, 965
TscAI	CASTG	2 cut(s)	646, 736
TseI	GCWGC	5 cut(s)	92, 199, 449, 740, 911
TspDTI	ATGAA	3 cut(s)	686, 735, 992
TspGWI	ACGGA	1 cut(s)	194
TspRI	CASTG	2 cut(s)	646, 736
Tth111I	GACNNNGTC	1 cut(s)	347
Van91I	CCANNNNNTGG	2 cut(s)	60, 490
VpaK11BI	GGWCC	4 cut(s)	35, 130, 458, 1042
XapI	RAATTY	2 cut(s)	868, 999
XceI	RCATGY	1 cut(s)	896
XmiI	GTMKAC	3 cut(s)	114, 709, 883
XspI	CTAG	3 cut(s)	531, 737, 875
Zsp2I	ATGCAT	1 cut(s)	894

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.