Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003376

Physical Location & Seq

Genomic Coordinates Forward (+)

57137880 .. 57139993

Gene Structure 2114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004196

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGATGATGATGAGCAATATTTGTGTGGGTTATTATCACGGAGTATTTGATAGTTCTGGAAAAGAGAAGGGGTATATCAAGAGCAAGCTTAGAGAGCAACGTTGGTGTCAAATGGTTTCTGATAAGCATCTCTTTTATGTTTCAGGACCAACACATCTGACTTCTATTGACTGGAAGAACAGTGATCATCAGAGGTCTGTTGCTGCCAGTTTGGTTAAGGGTGTCAAAGTTCTTGAGCTGGACCGCCAAGAGAAGCGTGAAGGACCCGAGGCCTTGGCTCCTCCTTGGTGGGAGTTCTTCCATTTCAAGTTGCTTCGTCCACTGGTGGAAGATGCCAGTTGTGGTTCCATTTTCGGTGCCATTTATGAGTTTAAACCTTCTCATGCTCCTCCTTTCTCTTCTCTTGGTACAGAACATTCACTATTGGAAGATGAAAACAACCCTCATTATGTTATTGCCTTCCGTGGCACCTTAACCGCGTATGACCTGGTCTCGCGAGATCTTAACTTGTCCCTCAAGTTAATCAAAAATGGACTTCACAAGACATCTCGCTTTAAGACTGCTATGCAAGCAATCCAAGCTACGGTTGGGGAAGCAGGTGATTCATCAAGCGTTTGGCTAGCTGGCCATTCCATGGGTTCAGTATTGGCAATGCTTGCTGGAAAAACAATGGCCAAGGACGGAATCTTACTCAAATCTTTTCTCTTCAATCAACCATTTGTTTTCGTTGCCCCGATGGAGAGGATCAAGCAGGAGAATATCAAGCTTGGTATTCGCTTTGCTCGGAGTGTGTTCACTGCAGGACTCGCTAAAGCTGTAAATCCCACCTGGTCAGAACACGAAGATCCATTCTTCGGTCTTTATGAATGGGTTCCTAGTGTATTTGTGAATCAAGGTGATGACTTCTGCTCTGGATATATTGGTTATTTCGAACATAGAAAGAAGATGGTAGAGATTGGAGCGGGAGGCATTGAGAGGTTAGCAACTCAGAATTCAATTGGGAGTTTATTGAGGTATGCAATAGGAAAGGGGACAGAGCCACCAATGCACCTCATTCCTTGTGCAAACCTCACAGTCAATTTAACCCCTTCAAGGAATTTCAAAGAAGCCCATGGAATTCGACAATGGTGGCTAGAGAATCAGCACTTGCAGTCTGAGACTCACAGATACAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

392

Amino Acids

44.11

Weight (kDa)

8.79

Isoelectric Point (pI)

35.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05260 AT2G05260 AT4G10955 AT4G10955
fragaria_vesca	FvH4_5g04751 FvH4_5g04751 FvH4_5g04760
malus_domestica	MD06G1108800.v1.1 MD14G1129700.v1.1
prunus_persica	Prupe.5G121400_v2.0.a1 Prupe.5G121400_v2.0.a1 Prupe.5G121600_v2.0.a1
pyrus_communis	pycom06g10220
rosa_chinensis	RchiOBHm_Chr7g0194501 RchiOBHm_Chr7g0194511
rosa_laevigata	RLG00000004195 RLG00000004196 RLG00000023363 RLG00000023364
rosa_multiflora	Rmu_co8167496.1_g000001 Rmu_co8479523.1_g000001 Rmu_sc0041088.1_g000001 Rmu_ssc0000261.1_g000021
rosa_roxburghii	Rroxscaffold_3G00261290 Rroxscaffold_3G00261300
rosa_rugosa	Rorug07G0016000
rosa_samantha	Rh7AG143400 Rh7AG143500 Rh7BG143900 Rh7BG144000 Rh7CG147600 Rh7CG147700 Rh7DG145200 Rh7DG145300
rosa_wichuraiana	Rw7G012280 Rw7G012290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	587
Acc36I	ACCTGC	1 cut(s)	587
AccB1I	GGYRCC	2 cut(s)	356, 467
AccB7I	CCANNNNNTGG	1 cut(s)	634
AccBSI	CCGCTC	1 cut(s)	962
AccII	CGCG	2 cut(s)	479, 496
AciI	CCGC	3 cut(s)	244, 477, 962
AclI	AACGTT	1 cut(s)	100
AclWI	GGATC	2 cut(s)	752, 839
AcoI	YGGCCR	2 cut(s)	625, 672
AcsI	RAATTY	3 cut(s)	991, 1096, 1116
AfaI	GTAC	1 cut(s)	409
AfiI	CCNNNNNNNGG	4 cut(s)	583, 634, 854, 1092
AgsI	TTSAA	5 cut(s)	307, 709, 996, 1092, 1102
AjnI	CCWGG	2 cut(s)	486, 827
AluBI	AGCT	6 cut(s)	88, 238, 581, 623, 766, 815
AluI	AGCT	6 cut(s)	88, 238, 581, 623, 766, 815
Alw26I	GTCTC	2 cut(s)	496, 1151
AlwI	GGATC	2 cut(s)	752, 839
Ama87I	CYCGRG	1 cut(s)	266
AoxI	GGCC	3 cut(s)	270, 625, 672
ApeKI	GCWGC	1 cut(s)	203
ApoI	RAATTY	3 cut(s)	991, 1096, 1116
Asp700I	GAANNNNTTC	1 cut(s)	870
AspS9I	GGNCC	3 cut(s)	146, 241, 263
AsuHPI	GGTGA	2 cut(s)	611, 908
AsuII	TTCGAA	1 cut(s)	930
AsuNHI	GCTAGC	1 cut(s)	619
AvaI	CYCGRG	1 cut(s)	266
AvaII	GGWCC	3 cut(s)	146, 241, 263
BalI	TGGCCA	2 cut(s)	627, 674
BanI	GGYRCC	2 cut(s)	356, 467
BbvI	GCAGC	1 cut(s)	190
BccI	CCATC	2 cut(s)	730, 940
BciT130I	CCWGG	2 cut(s)	488, 829
BclI	TGATCA	1 cut(s)	184
BcoDI	GTCTC	2 cut(s)	496, 1151
BfaI	CTAG	3 cut(s)	620, 876, 1133
BfmI	CTRYAG	1 cut(s)	798
BfuAI	ACCTGC	1 cut(s)	587
BglII	AGATCT	1 cut(s)	499
BisI	GCNGC	1 cut(s)	204
BlsI	GCNGC	1 cut(s)	205
Bme1390I	CCNGG	2 cut(s)	488, 829
Bme18I	GGWCC	3 cut(s)	146, 241, 263
BmeT110I	CYCGRG	1 cut(s)	266
BmgT120I	GGNCC	3 cut(s)	146, 241, 263
BmiI	GGNNCC	6 cut(s)	265, 279, 346, 358, 469, 873
BmrFI	CCNGG	2 cut(s)	488, 829
BmsI	GCATC	2 cut(s)	136, 322
BmtI	GCTAGC	1 cut(s)	623
Bpu14I	TTCGAA	1 cut(s)	930
BpuEI	CTTGAG	2 cut(s)	254, 500
BsaBI	GATNNNNATC	1 cut(s)	126
BsaI	GGTCTC	1 cut(s)	496
BsaJI	CCNNGG	7 cut(s)	267, 273, 284, 463, 633, 675, 1111
Bsc4I	CCNNNNNNNGG	4 cut(s)	583, 634, 854, 1092
Bse1I	ACTGG	4 cut(s)	176, 207, 327, 336
Bse3DI	GCAATG	1 cut(s)	657
Bse8I	GATNNNNATC	1 cut(s)	126
BseBI	CCWGG	2 cut(s)	488, 829
BseDI	CCNNGG	7 cut(s)	267, 273, 284, 463, 633, 675, 1111
BseJI	GATNNNNATC	1 cut(s)	126
BseLI	CCNNNNNNNGG	4 cut(s)	583, 634, 854, 1092
BseMI	GCAATG	1 cut(s)	657
BseMII	CTCAG	2 cut(s)	1001, 1146
BseNI	ACTGG	4 cut(s)	176, 207, 327, 336
BseRI	GAGGAG	2 cut(s)	270, 378
BseXI	GCAGC	1 cut(s)	190
Bsh1236I	CGCG	2 cut(s)	479, 496
BshFI	GGCC	3 cut(s)	272, 627, 674
BshNI	GGYRCC	2 cut(s)	356, 467
BsiHKCI	CYCGRG	1 cut(s)	266
BslFI	GGGAC	2 cut(s)	496, 1045
BslI	CCNNNNNNNGG	4 cut(s)	583, 634, 854, 1092
BsmAI	GTCTC	2 cut(s)	496, 1151
BsmFI	GGGAC	2 cut(s)	496, 1045
BsnI	GGCC	3 cut(s)	272, 627, 674
Bso31I	GGTCTC	1 cut(s)	496
BsoBI	CYCGRG	1 cut(s)	266
Bsp119I	TTCGAA	1 cut(s)	930
Bsp143I	GATC	4 cut(s)	184, 499, 744, 844
Bsp19I	CCATGG	2 cut(s)	633, 1111
Bsp68I	TCGCGA	1 cut(s)	496
BspACI	CCGC	3 cut(s)	244, 477, 962
BspANI	GGCC	3 cut(s)	272, 627, 674
BspCNI	CTCAG	2 cut(s)	1000, 1147
BspFNI	CGCG	2 cut(s)	479, 496
BspLI	GGNNCC	6 cut(s)	265, 279, 346, 358, 469, 873
BspMAI	CTGCAG	1 cut(s)	802
BspMI	ACCTGC	1 cut(s)	587
BspOI	GCTAGC	1 cut(s)	623
BspPI	GGATC	2 cut(s)	752, 839
BspT104I	TTCGAA	1 cut(s)	930
BspT107I	GGYRCC	2 cut(s)	356, 467
BspTNI	GGTCTC	1 cut(s)	496
BsrBI	CCGCTC	1 cut(s)	962
BsrDI	GCAATG	1 cut(s)	657
BsrI	ACTGG	4 cut(s)	176, 207, 327, 336
BssECI	CCNNGG	7 cut(s)	267, 273, 284, 463, 633, 675, 1111
BssMI	GATC	4 cut(s)	184, 499, 744, 844
BssT1I	CCWWGG	5 cut(s)	273, 284, 633, 675, 1111
Bst2UI	CCWGG	2 cut(s)	488, 829
Bst4CI	ACNGT	3 cut(s)	182, 586, 1075
Bst6I	CTCTTC	2 cut(s)	403, 710
BstAPI	GCANNNNNTGC	1 cut(s)	656
BstBI	TTCGAA	1 cut(s)	930
BstC8I	GCNNGC	5 cut(s)	86, 570, 621, 625, 657
BstDEI	CTNAG	3 cut(s)	89, 987, 1155
BstDSI	CCRYGG	3 cut(s)	463, 633, 1111
BstFNI	CGCG	2 cut(s)	479, 496
BstKTI	GATC	4 cut(s)	187, 502, 747, 847
BstMAI	GTCTC	2 cut(s)	496, 1151
BstMBI	GATC	4 cut(s)	184, 499, 744, 844
BstMWI	GCNNNNNNNGC	6 cut(s)	94, 569, 578, 656, 806, 1045
BstNI	CCWGG	2 cut(s)	488, 829
BstSCI	CCNGG	2 cut(s)	486, 827
BstSFI	CTRYAG	1 cut(s)	798
BstUI	CGCG	2 cut(s)	479, 496
BstV1I	GCAGC	1 cut(s)	190
BstX2I	RGATCY	2 cut(s)	499, 844
BstYI	RGATCY	2 cut(s)	499, 844
BsuRI	GGCC	3 cut(s)	272, 627, 674
BtgI	CCRYGG	3 cut(s)	463, 633, 1111
BtsI	GCAGTG	1 cut(s)	795
BtsIMutI	CAGTG	3 cut(s)	187, 320, 795
BtuMI	TCGCGA	1 cut(s)	496
BveI	ACCTGC	1 cut(s)	587
Cac8I	GCNNGC	5 cut(s)	86, 570, 621, 625, 657
Cfr13I	GGNCC	3 cut(s)	146, 241, 263
CsiI	ACCWGGT	2 cut(s)	486, 827
Csp6I	GTAC	1 cut(s)	408
CviAII	CATG	3 cut(s)	383, 634, 1112
CviQI	GTAC	1 cut(s)	408
DdeI	CTNAG	3 cut(s)	89, 987, 1155
DpnI	GATC	4 cut(s)	186, 501, 746, 846
DpnII	GATC	4 cut(s)	184, 499, 744, 844
DraI	TTTAAA	1 cut(s)	373
EaeI	YGGCCR	2 cut(s)	625, 672
Eam1104I	CTCTTC	2 cut(s)	403, 710
EarI	CTCTTC	2 cut(s)	403, 710
Eco130I	CCWWGG	5 cut(s)	273, 284, 633, 675, 1111
Eco147I	AGGCCT	1 cut(s)	272
Eco31I	GGTCTC	1 cut(s)	496
Eco47I	GGWCC	3 cut(s)	146, 241, 263
Eco88I	CYCGRG	1 cut(s)	266
EcoO109I	RGGNCCY	1 cut(s)	263
EcoRI	GAATTC	2 cut(s)	991, 1116
EcoRII	CCWGG	2 cut(s)	486, 827
EcoT14I	CCWWGG	5 cut(s)	273, 284, 633, 675, 1111
ErhI	CCWWGG	5 cut(s)	273, 284, 633, 675, 1111
FaeI	CATG	3 cut(s)	386, 637, 1115
FalI	AAGNNNNNCTT	2 cut(s)	116, 148
FaqI	GGGAC	2 cut(s)	496, 1045
FatI	CATG	3 cut(s)	382, 633, 1111
FauI	CCCGC	1 cut(s)	955
FbaI	TGATCA	1 cut(s)	184
Fnu4HI	GCNGC	1 cut(s)	204
Fsp4HI	GCNGC	1 cut(s)	204
FspBI	CTAG	3 cut(s)	620, 876, 1133
GluI	GCNGC	1 cut(s)	204
HaeIII	GGCC	3 cut(s)	272, 627, 674
Hin1II	CATG	3 cut(s)	386, 637, 1115
HindIII	AAGCTT	2 cut(s)	86, 764
HinfI	GANTC	6 cut(s)	602, 684, 804, 889, 1138, 1159
HphI	GGTGA	2 cut(s)	611, 908
Hpy166II	GTNNAC	2 cut(s)	320, 795
Hpy188I	TCNGA	7 cut(s)	121, 159, 192, 786, 835, 990, 1156
Hpy188III	TCNNGA	6 cut(s)	57, 79, 144, 233, 495, 912
Hpy8I	GTNNAC	2 cut(s)	320, 795
HpyAV	CCTTC	5 cut(s)	61, 254, 387, 469, 1098
HpyCH4III	ACNGT	3 cut(s)	182, 586, 1075
HpyCH4IV	ACGT	1 cut(s)	100
HpyCH4V	TGCA	6 cut(s)	568, 800, 1019, 1048, 1064, 1150
HpyF10VI	GCNNNNNNNGC	6 cut(s)	94, 569, 578, 656, 806, 1045
HpyF3I	CTNAG	3 cut(s)	89, 987, 1155
HpySE526I	ACGT	1 cut(s)	100
Hsp92II	CATG	3 cut(s)	386, 637, 1115
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	4 cut(s)	184, 499, 744, 844
LmnI	GCTCC	3 cut(s)	283, 391, 959
Lsp1109I	GCAGC	1 cut(s)	190
LweI	GCATC	2 cut(s)	136, 322
MabI	ACCWGGT	2 cut(s)	486, 827
MaeI	CTAG	3 cut(s)	620, 876, 1133
MaeII	ACGT	1 cut(s)	100
MalI	GATC	4 cut(s)	186, 501, 746, 846
MbiI	CCGCTC	1 cut(s)	962
MboI	GATC	4 cut(s)	184, 499, 744, 844
MboII	GAAGA	9 cut(s)	187, 289, 341, 390, 440, 697, 844, 854, 955
MfeI	CAATTG	1 cut(s)	996
MflI	RGATCY	2 cut(s)	499, 844
MlsI	TGGCCA	2 cut(s)	627, 674
MluCI	AATT	5 cut(s)	991, 996, 1078, 1096, 1116
MluNI	TGGCCA	2 cut(s)	627, 674
MlyI	GAGTC	2 cut(s)	798, 1153
Mox20I	TGGCCA	2 cut(s)	627, 674
MroXI	GAANNNNTTC	1 cut(s)	870
MscI	TGGCCA	2 cut(s)	627, 674
MseI	TTAA	7 cut(s)	216, 372, 473, 504, 521, 555, 1082
Msp20I	TGGCCA	2 cut(s)	627, 674
MspR9I	CCNGG	2 cut(s)	488, 829
MssI	GTTTAAAC	1 cut(s)	373
MunI	CAATTG	1 cut(s)	996
MvaI	CCWGG	2 cut(s)	488, 829
MvnI	CGCG	2 cut(s)	479, 496
MwoI	GCNNNNNNNGC	6 cut(s)	94, 569, 578, 656, 806, 1045
NcoI	CCATGG	2 cut(s)	633, 1111
NdeII	GATC	4 cut(s)	184, 499, 744, 844
NheI	GCTAGC	1 cut(s)	619
NlaIII	CATG	3 cut(s)	386, 637, 1115
NlaIV	GGNNCC	6 cut(s)	265, 279, 346, 358, 469, 873
NruI	TCGCGA	1 cut(s)	496
NspV	TTCGAA	1 cut(s)	930
PaqCI	CACCTGC	1 cut(s)	587
PceI	AGGCCT	1 cut(s)	272
PdmI	GAANNNNTTC	1 cut(s)	870
PfeI	GAWTC	4 cut(s)	602, 684, 889, 1138
PflFI	GACNNNGTC	1 cut(s)	488
PflMI	CCANNNNNTGG	1 cut(s)	634
PkrI	GCNGC	1 cut(s)	205
PleI	GAGTC	2 cut(s)	798, 1153
PmeI	GTTTAAAC	1 cut(s)	373
PpsI	GAGTC	2 cut(s)	798, 1153
PpuMI	RGGWCCY	1 cut(s)	263
Psp1406I	AACGTT	1 cut(s)	100
Psp5II	RGGWCCY	1 cut(s)	263
Psp6I	CCWGG	2 cut(s)	486, 827
PspGI	CCWGG	2 cut(s)	486, 827
PspN4I	GGNNCC	6 cut(s)	265, 279, 346, 358, 469, 873
PspPI	GGNCC	3 cut(s)	146, 241, 263
PspPPI	RGGWCCY	1 cut(s)	263
PstI	CTGCAG	1 cut(s)	802
PsuI	RGATCY	2 cut(s)	499, 844
PsyI	GACNNNGTC	1 cut(s)	488
RruI	TCGCGA	1 cut(s)	496
RsaI	GTAC	1 cut(s)	409
RsaNI	GTAC	1 cut(s)	408
SaqAI	TTAA	7 cut(s)	216, 372, 473, 504, 521, 555, 1082
SatI	GCNGC	1 cut(s)	204
Sau3AI	GATC	4 cut(s)	184, 499, 744, 844
Sau96I	GGNCC	3 cut(s)	146, 241, 263
SchI	GAGTC	2 cut(s)	798, 1153
ScrFI	CCNGG	2 cut(s)	488, 829
SexAI	ACCWGGT	2 cut(s)	486, 827
SfaNI	GCATC	2 cut(s)	136, 322
SfcI	CTRYAG	1 cut(s)	798
SfuI	TTCGAA	1 cut(s)	930
SinI	GGWCC	3 cut(s)	146, 241, 263
SmlI	CTYRAG	2 cut(s)	233, 515
SmoI	CTYRAG	2 cut(s)	233, 515
Sse9I	AATT	5 cut(s)	991, 996, 1078, 1096, 1116
SseBI	AGGCCT	1 cut(s)	272
SsiI	CCGC	3 cut(s)	244, 477, 962
SspI	AATATT	1 cut(s)	19
SspMI	CTAG	3 cut(s)	620, 876, 1133
StuI	AGGCCT	1 cut(s)	272
StyD4I	CCNGG	2 cut(s)	486, 827
StyI	CCWWGG	5 cut(s)	273, 284, 633, 675, 1111
TaaI	ACNGT	3 cut(s)	182, 586, 1075
TaiI	ACGT	1 cut(s)	103
TaqI	TCGA	2 cut(s)	930, 1120
TaqII	GACCGA	1 cut(s)	845
TasI	AATT	5 cut(s)	991, 996, 1078, 1096, 1116
TfiI	GAWTC	4 cut(s)	602, 684, 889, 1138
Tru1I	TTAA	7 cut(s)	216, 372, 473, 504, 521, 555, 1082
Tru9I	TTAA	7 cut(s)	216, 372, 473, 504, 521, 555, 1082
TscAI	CASTG	3 cut(s)	187, 327, 802
TseI	GCWGC	1 cut(s)	203
TspDTI	ATGAA	3 cut(s)	447, 594, 879
TspGWI	ACGGA	3 cut(s)	54, 452, 696
TspRI	CASTG	3 cut(s)	187, 327, 802
Tth111I	GACNNNGTC	1 cut(s)	488
Van91I	CCANNNNNTGG	1 cut(s)	634
VpaK11BI	GGWCC	3 cut(s)	146, 241, 263
XapI	RAATTY	3 cut(s)	991, 1096, 1116
XcmI	CCANNNNNNNNNTGG	1 cut(s)	584
XmnI	GAANNNNTTC	1 cut(s)	870
XspI	CTAG	3 cut(s)	620, 876, 1133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.