Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003376

Physical Location & Seq

Genomic Coordinates Forward (+)

2790202 .. 2792090

Gene Structure 1889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g04760.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGATGATGAGCAATATTTCTGCGGTTTGTTTTCAGGGAGTATTTGATAGTTCTGGAAAAGAGAAAAGGTTGCGAGGATATATCAAGAGCAAGGTTACAGAGAAACGTTGGTGTCTAATGGTTTCTGATAGGCATCTCTTTTATGTTTCAGGACCATCACATCTAACTTCTATTGACTGGAAGAACACTGATCATCAGAGGTCTGTTGCTGCCAGTTTGGTTCAGGGTGTCAAAGTTCTTGAGGTGGACCATCAAGAGAAGCGTAAAGGGCACGAGGCCTTGGCTCCTCCTTGGTGGGAGTTCTTCCATTTTGAGTTGGTTCGTCCACTTGTTGATGATGACAGTTGGTCCATCTTCGGTGCCATTTATGAACTTAAACCTCCTCACTCTTCTCTTGGCACAGAACATTCAGTATTGGAAGATGAAAACAGCCCTCATTTTGTTATTGCCTTCCGTGGCACCTTAACCATGTATGACCTGGTCTCACGAGATCTTAACTTGTCCCTCAAGTTAATCAAAAATAGACTTCACAAGACATCTCGCTTTGAGACTGCTATGCAGGCAATCCGAGCTACAGTTGGGGATGCTGGCGATTCATCAAGCGTTTGGTTAGCTGGCCATTCCATGGGTTCAGTATTGGCAATGCTTGCTGGAAAAACAATGGCCAAGGATGGAATTTTCCTCAAATCTTTTCTCTTCAACCAACCATTTGTTTTCGTTGCCCCAATGGAGAGGATCAAGCAGGAGAATGTCAAGCTAGGCATTCGCTTTGCTCGGAGTGTATTCACTGCAGGACTCGCTAAAGCTGTGAATCCAACCTGGCCAGAACAAGAAGATCCATTTTTTGGTCTGTATGAATGGGTTCCTAATGTATTTGTGAATCAAGGCGATGACTTCTGCTCTGGATATATTGGTTATTTTGAACATAGAAAGAAGATGGTGGAGATTGGAGCAGGAGGCATTGAGAGGTTAGCAACCCAGAATTCAATTGGGAGTTTATTAAGGTATGCAGTAGGAAAGGAGACAGAGCCACCAATGCACCTCATTCCTTGTGCAGATCTCACAGTCAATATGACACCTTCAAGGGATTTCAAAGAAGCCCATGGAATTCGACAATGGTGGAGAGAGAATCAGAACTTGAAGTCTGAGACTTACAGATACAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

389

Amino Acids

44.16

Weight (kDa)

8.52

Isoelectric Point (pI)

32.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05260 AT2G05260 AT4G10955 AT4G10955
fragaria_vesca	FvH4_5g04751 FvH4_5g04751 FvH4_5g04760
malus_domestica	MD06G1108800.v1.1 MD14G1129700.v1.1
prunus_persica	Prupe.5G121400_v2.0.a1 Prupe.5G121400_v2.0.a1 Prupe.5G121600_v2.0.a1
pyrus_communis	pycom06g10220
rosa_chinensis	RchiOBHm_Chr7g0194501 RchiOBHm_Chr7g0194511
rosa_laevigata	RLG00000004195 RLG00000004196 RLG00000023363 RLG00000023364
rosa_multiflora	Rmu_co8167496.1_g000001 Rmu_co8479523.1_g000001 Rmu_sc0041088.1_g000001 Rmu_ssc0000261.1_g000021
rosa_roxburghii	Rroxscaffold_3G00261290 Rroxscaffold_3G00261300
rosa_rugosa	Rorug07G0016000
rosa_samantha	Rh7AG143400 Rh7AG143500 Rh7BG143900 Rh7BG144000 Rh7CG147600 Rh7CG147700 Rh7DG145200 Rh7DG145300
rosa_wichuraiana	Rw7G012280 Rw7G012290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	359, 458
AccB7I	CCANNNNNTGG	2 cut(s)	625, 845
AciI	CCGC	1 cut(s)	23
AclI	AACGTT	1 cut(s)	106
AclWI	GGATC	2 cut(s)	743, 830
AcoI	YGGCCR	3 cut(s)	616, 663, 821
AcsI	RAATTY	3 cut(s)	675, 982, 1107
AfiI	CCNNNNNNNGG	2 cut(s)	625, 845
AgsI	TTSAA	6 cut(s)	700, 923, 987, 1083, 1093, 1141
AhdI	GACNNNNNGTC	1 cut(s)	346
AjnI	CCWGG	2 cut(s)	477, 818
AluBI	AGCT	4 cut(s)	572, 614, 757, 806
AluI	AGCT	4 cut(s)	572, 614, 757, 806
Alw26I	GTCTC	4 cut(s)	487, 542, 1016, 1142
AlwI	GGATC	2 cut(s)	743, 830
AoxI	GGCC	4 cut(s)	276, 616, 663, 821
ApeKI	GCWGC	1 cut(s)	209
ApoI	RAATTY	3 cut(s)	675, 982, 1107
Asp700I	GAANNNNTTC	1 cut(s)	861
AspS9I	GGNCC	3 cut(s)	152, 247, 348
AvaII	GGWCC	3 cut(s)	152, 247, 348
BaeGI	GKGCMC	1 cut(s)	273
BalI	TGGCCA	3 cut(s)	618, 665, 823
BanI	GGYRCC	2 cut(s)	359, 458
BauI	CACGAG	2 cut(s)	272, 486
BbvI	GCAGC	1 cut(s)	196
BccI	CCATC	5 cut(s)	163, 258, 359, 665, 931
BciT130I	CCWGG	2 cut(s)	479, 820
BclI	TGATCA	1 cut(s)	190
BcoDI	GTCTC	4 cut(s)	487, 542, 1016, 1142
BfaI	CTAG	1 cut(s)	758
BfmI	CTRYAG	2 cut(s)	573, 789
BglII	AGATCT	2 cut(s)	490, 1057
BisI	GCNGC	1 cut(s)	210
BlsI	GCNGC	1 cut(s)	211
Bme1390I	CCNGG	2 cut(s)	479, 820
Bme18I	GGWCC	3 cut(s)	152, 247, 348
BmeRI	GACNNNNNGTC	1 cut(s)	346
BmgT120I	GGNCC	3 cut(s)	152, 247, 348
BmiI	GGNNCC	4 cut(s)	285, 361, 460, 864
BmrFI	CCNGG	2 cut(s)	479, 820
BmsI	GCATC	2 cut(s)	142, 574
BpuEI	CTTGAG	2 cut(s)	260, 491
BsaBI	GATNNNNATC	1 cut(s)	132
BsaI	GGTCTC	1 cut(s)	487
BsaJI	CCNNGG	6 cut(s)	279, 290, 454, 624, 666, 1102
Bsc4I	CCNNNNNNNGG	2 cut(s)	625, 845
Bse1I	ACTGG	2 cut(s)	182, 213
Bse3DI	GCAATG	1 cut(s)	648
Bse8I	GATNNNNATC	1 cut(s)	132
BseBI	CCWGG	2 cut(s)	479, 820
BseDI	CCNNGG	6 cut(s)	279, 290, 454, 624, 666, 1102
BseGI	GGATG	2 cut(s)	589, 676
BseJI	GATNNNNATC	1 cut(s)	132
BseLI	CCNNNNNNNGG	2 cut(s)	625, 845
BseMI	GCAATG	1 cut(s)	648
BseMII	CTCAG	1 cut(s)	1137
BseNI	ACTGG	2 cut(s)	182, 213
BseRI	GAGGAG	2 cut(s)	276, 372
BseSI	GKGCMC	1 cut(s)	273
BseXI	GCAGC	1 cut(s)	196
BsgI	GTGCAG	1 cut(s)	1074
BshFI	GGCC	4 cut(s)	278, 618, 665, 823
BshNI	GGYRCC	2 cut(s)	359, 458
BslFI	GGGAC	1 cut(s)	487
BslI	CCNNNNNNNGG	2 cut(s)	625, 845
BsmAI	GTCTC	4 cut(s)	487, 542, 1016, 1142
BsmFI	GGGAC	1 cut(s)	487
BsmI	GAATGC	1 cut(s)	762
BsnI	GGCC	4 cut(s)	278, 618, 665, 823
Bso31I	GGTCTC	1 cut(s)	487
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp143I	GATC	5 cut(s)	190, 490, 735, 835, 1057
Bsp19I	CCATGG	2 cut(s)	624, 1102
BspACI	CCGC	1 cut(s)	23
BspANI	GGCC	4 cut(s)	278, 618, 665, 823
BspCNI	CTCAG	1 cut(s)	1138
BspLI	GGNNCC	4 cut(s)	285, 361, 460, 864
BspMAI	CTGCAG	1 cut(s)	793
BspPI	GGATC	2 cut(s)	743, 830
BspT107I	GGYRCC	2 cut(s)	359, 458
BspTNI	GGTCTC	1 cut(s)	487
BsrDI	GCAATG	1 cut(s)	648
BsrI	ACTGG	2 cut(s)	182, 213
BssECI	CCNNGG	6 cut(s)	279, 290, 454, 624, 666, 1102
BssMI	GATC	5 cut(s)	190, 490, 735, 835, 1057
BssSI	CACGAG	2 cut(s)	272, 486
BssT1I	CCWWGG	5 cut(s)	279, 290, 624, 666, 1102
Bst2BI	CACGAG	2 cut(s)	272, 486
Bst2UI	CCWGG	2 cut(s)	479, 820
Bst4CI	ACNGT	3 cut(s)	344, 577, 1066
Bst6I	CTCTTC	2 cut(s)	394, 701
BstAPI	GCANNNNNTGC	1 cut(s)	647
BstC8I	GCNNGC	4 cut(s)	561, 589, 616, 648
BstDEI	CTNAG	1 cut(s)	1146
BstDSI	CCRYGG	3 cut(s)	454, 624, 1102
BstF5I	GGATG	2 cut(s)	589, 676
BstKTI	GATC	5 cut(s)	193, 493, 738, 838, 1060
BstMAI	GTCTC	4 cut(s)	487, 542, 1016, 1142
BstMBI	GATC	5 cut(s)	190, 490, 735, 835, 1057
BstMWI	GCNNNNNNNGC	6 cut(s)	268, 560, 569, 647, 797, 1036
BstNI	CCWGG	2 cut(s)	479, 820
BstSCI	CCNGG	2 cut(s)	477, 818
BstSFI	CTRYAG	2 cut(s)	573, 789
BstSLI	GKGCMC	1 cut(s)	273
BstV1I	GCAGC	1 cut(s)	196
BstX2I	RGATCY	3 cut(s)	490, 835, 1057
BstYI	RGATCY	3 cut(s)	490, 835, 1057
BsuRI	GGCC	4 cut(s)	278, 618, 665, 823
BtgI	CCRYGG	3 cut(s)	454, 624, 1102
BtgZI	GCGATG	1 cut(s)	903
BtsCI	GGATG	2 cut(s)	589, 676
BtsI	GCAGTG	1 cut(s)	786
BtsIMutI	CAGTG	2 cut(s)	186, 786
Cac8I	GCNNGC	4 cut(s)	561, 589, 616, 648
Cfr13I	GGNCC	3 cut(s)	152, 247, 348
CsiI	ACCWGGT	1 cut(s)	477
CviAII	CATG	3 cut(s)	469, 625, 1103
DdeI	CTNAG	1 cut(s)	1146
DpnI	GATC	5 cut(s)	192, 492, 737, 837, 1059
DpnII	GATC	5 cut(s)	190, 490, 735, 835, 1057
DriI	GACNNNNNGTC	1 cut(s)	346
EaeI	YGGCCR	3 cut(s)	616, 663, 821
Eam1104I	CTCTTC	2 cut(s)	394, 701
Eam1105I	GACNNNNNGTC	1 cut(s)	346
EarI	CTCTTC	2 cut(s)	394, 701
Eco130I	CCWWGG	5 cut(s)	279, 290, 624, 666, 1102
Eco147I	AGGCCT	1 cut(s)	278
Eco31I	GGTCTC	1 cut(s)	487
Eco47I	GGWCC	3 cut(s)	152, 247, 348
EcoRI	GAATTC	2 cut(s)	982, 1107
EcoRII	CCWGG	2 cut(s)	477, 818
EcoT14I	CCWWGG	5 cut(s)	279, 290, 624, 666, 1102
ErhI	CCWWGG	5 cut(s)	279, 290, 624, 666, 1102
FaeI	CATG	3 cut(s)	472, 628, 1106
FaqI	GGGAC	1 cut(s)	487
FatI	CATG	3 cut(s)	468, 624, 1102
FbaI	TGATCA	1 cut(s)	190
Fnu4HI	GCNGC	1 cut(s)	210
FokI	GGATG	2 cut(s)	596, 683
Fsp4HI	GCNGC	1 cut(s)	210
FspBI	CTAG	1 cut(s)	758
GluI	GCNGC	1 cut(s)	210
HaeIII	GGCC	4 cut(s)	278, 618, 665, 823
Hin1II	CATG	3 cut(s)	472, 628, 1106
HinfI	GANTC	5 cut(s)	593, 795, 811, 880, 1129
Hpy166II	GTNNAC	2 cut(s)	247, 326
Hpy188I	TCNGA	6 cut(s)	127, 198, 569, 777, 1134, 1147
Hpy188III	TCNNGA	7 cut(s)	54, 85, 150, 239, 254, 486, 903
Hpy8I	GTNNAC	2 cut(s)	247, 326
HpyAV	CCTTC	2 cut(s)	460, 1089
HpyCH4III	ACNGT	3 cut(s)	344, 577, 1066
HpyCH4IV	ACGT	1 cut(s)	106
HpyCH4V	TGCA	5 cut(s)	559, 791, 1010, 1039, 1055
HpyF10VI	GCNNNNNNNGC	6 cut(s)	268, 560, 569, 647, 797, 1036
HpyF3I	CTNAG	1 cut(s)	1146
HpySE526I	ACGT	1 cut(s)	106
Hsp92II	CATG	3 cut(s)	472, 628, 1106
Ksp22I	TGATCA	1 cut(s)	190
Kzo9I	GATC	5 cut(s)	190, 490, 735, 835, 1057
LmnI	GCTCC	2 cut(s)	289, 950
Lsp1109I	GCAGC	1 cut(s)	196
LweI	GCATC	2 cut(s)	142, 574
MabI	ACCWGGT	1 cut(s)	477
MaeI	CTAG	1 cut(s)	758
MaeII	ACGT	1 cut(s)	106
MaeIII	GTNAC	1 cut(s)	94
MalI	GATC	5 cut(s)	192, 492, 737, 837, 1059
MboI	GATC	5 cut(s)	190, 490, 735, 835, 1057
MboII	GAAGA	8 cut(s)	193, 295, 346, 381, 431, 688, 845, 946
MfeI	CAATTG	1 cut(s)	987
MflI	RGATCY	3 cut(s)	490, 835, 1057
MhlI	GDGCHC	1 cut(s)	273
MlsI	TGGCCA	3 cut(s)	618, 665, 823
MluCI	AATT	4 cut(s)	675, 982, 987, 1107
MluNI	TGGCCA	3 cut(s)	618, 665, 823
MlyI	GAGTC	1 cut(s)	789
MmeI	TCCRAC	1 cut(s)	839
Mox20I	TGGCCA	3 cut(s)	618, 665, 823
MroXI	GAANNNNTTC	1 cut(s)	861
MscI	TGGCCA	3 cut(s)	618, 665, 823
MseI	TTAA	5 cut(s)	375, 464, 495, 512, 1001
Msp20I	TGGCCA	3 cut(s)	618, 665, 823
MspR9I	CCNGG	2 cut(s)	479, 820
MunI	CAATTG	1 cut(s)	987
Mva1269I	GAATGC	1 cut(s)	762
MvaI	CCWGG	2 cut(s)	479, 820
MwoI	GCNNNNNNNGC	6 cut(s)	268, 560, 569, 647, 797, 1036
NcoI	CCATGG	2 cut(s)	624, 1102
NdeII	GATC	5 cut(s)	190, 490, 735, 835, 1057
NlaIII	CATG	3 cut(s)	472, 628, 1106
NlaIV	GGNNCC	4 cut(s)	285, 361, 460, 864
PceI	AGGCCT	1 cut(s)	278
PctI	GAATGC	1 cut(s)	762
PdmI	GAANNNNTTC	1 cut(s)	861
PfeI	GAWTC	4 cut(s)	593, 811, 880, 1129
PflFI	GACNNNGTC	1 cut(s)	479
PflMI	CCANNNNNTGG	2 cut(s)	625, 845
PkrI	GCNGC	1 cut(s)	211
PleI	GAGTC	1 cut(s)	789
PpsI	GAGTC	1 cut(s)	789
Psp1406I	AACGTT	1 cut(s)	106
Psp6I	CCWGG	2 cut(s)	477, 818
PspGI	CCWGG	2 cut(s)	477, 818
PspN4I	GGNNCC	4 cut(s)	285, 361, 460, 864
PspPI	GGNCC	3 cut(s)	152, 247, 348
PstI	CTGCAG	1 cut(s)	793
PsuI	RGATCY	3 cut(s)	490, 835, 1057
PsyI	GACNNNGTC	1 cut(s)	479
SaqAI	TTAA	5 cut(s)	375, 464, 495, 512, 1001
SatI	GCNGC	1 cut(s)	210
Sau3AI	GATC	5 cut(s)	190, 490, 735, 835, 1057
Sau96I	GGNCC	3 cut(s)	152, 247, 348
SchI	GAGTC	1 cut(s)	789
ScrFI	CCNGG	2 cut(s)	479, 820
SduI	GDGCHC	1 cut(s)	273
SexAI	ACCWGGT	1 cut(s)	477
SfaNI	GCATC	2 cut(s)	142, 574
SfcI	CTRYAG	2 cut(s)	573, 789
SinI	GGWCC	3 cut(s)	152, 247, 348
SmlI	CTYRAG	2 cut(s)	239, 506
SmoI	CTYRAG	2 cut(s)	239, 506
Sse9I	AATT	4 cut(s)	675, 982, 987, 1107
SseBI	AGGCCT	1 cut(s)	278
SsiI	CCGC	1 cut(s)	23
SspI	AATATT	1 cut(s)	16
SspMI	CTAG	1 cut(s)	758
StuI	AGGCCT	1 cut(s)	278
StyD4I	CCNGG	2 cut(s)	477, 818
StyI	CCWWGG	5 cut(s)	279, 290, 624, 666, 1102
TaaI	ACNGT	3 cut(s)	344, 577, 1066
TaiI	ACGT	1 cut(s)	109
TaqI	TCGA	1 cut(s)	1111
TasI	AATT	4 cut(s)	675, 982, 987, 1107
TfiI	GAWTC	4 cut(s)	593, 811, 880, 1129
Tru1I	TTAA	5 cut(s)	375, 464, 495, 512, 1001
Tru9I	TTAA	5 cut(s)	375, 464, 495, 512, 1001
TscAI	CASTG	2 cut(s)	193, 793
TseI	GCWGC	1 cut(s)	209
TspDTI	ATGAA	4 cut(s)	384, 438, 585, 870
TspGWI	ACGGA	1 cut(s)	443
TspRI	CASTG	2 cut(s)	193, 793
Tth111I	GACNNNGTC	1 cut(s)	479
Van91I	CCANNNNNTGG	2 cut(s)	625, 845
VpaK11BI	GGWCC	3 cut(s)	152, 247, 348
XapI	RAATTY	3 cut(s)	675, 982, 1107
XcmI	CCANNNNNNNNNTGG	2 cut(s)	475, 986
XmnI	GAANNNNTTC	1 cut(s)	861
XspI	CTAG	1 cut(s)	758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.