Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003376

Physical Location & Seq

Genomic Coordinates Reverse (-)

12367086 .. 12369206

Gene Structure 2121 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG145200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGATGATGATGAGCAATATTTGTGTGGGTTATTATCACGGAGTATTTGATAGTTCTGGAAAAGAGAAAGGGTATATCAAGAGCAAGCTTAGAGAGCAACGTTGGTGTCAAATGGTTTCTGATAAGCATCTCTTTTATGTTTCAGGACCAACACATCTGACTTCTATTGACTGGAAGAACAGTGATCATCAGAGGTCTGTTGCTGCCAGTTTGGTTAAGGGTGTCAAAGTTCTTGAGCTGGACCGCCAAGAGAAGCGTGAAGGACCCGAGGCCTTGGCTCCTCCTTGGTGGGAGTTCTTCCATTTCAAGTTGCTTCGTCCACTGGTGGATGATGCCAGTTGTGGTTCCATTTTCGGTGCCATTTATGAGTTTAAACCTCCTCATGCTCCTCCTTTCTCTTCTCTTGGTACAGAACATTTACTATTGGAAGATGAAAACAGCCCTCATTATGTTATTGCCTTCCGTGGCACCTTAACCGCGTATGACCTGGTCTCGCGAGATCTTAACTTGTCCCTCAAGTTAATCAAAAATGGACTTCACAAGACATCTCGCTTTAAGACTGCTATGCAAGCAATCCAAGCTACGGTTGGGGAAGCAGGTGATTCATCAAGCGTTTGGCTAGCTGGCCATTCCATGGGTTCAGTATTGGCAATGCTTGCTGGAAAAACAATGGCCAAGGACGGAATCTTACTCAAATCTTTTCTCTTCAATCAACCATTTGTTTTCGTTGCCCCGATGGAGAGGATCAAACACGAGAATATCAAGCTTGGTATTCGCTTTGCCCGGAGTGTGTTCACTGCGGGACTGGCTAAAGCTGTAAATCCCACCTGGTCAGAACACGAAGATCCATTCTTCGGTCTTTATGAATGGGTTCCTAGTGTATTTGTGAATCAAGGTGATGACTTCTGCTCTGGATATATTGGTTATTTCGAACATAGAAAGAAGATGGTAGAGATTGGAGCAGGAGGCATTGAGCGGTTGGCAACCCAGAATTCAATTGGGAGTTTATTGAGGTATGCAATAGGAAAGGAGACAGAGCCACCAATGCACCTCATTCCTAGTGCAAACCTCACGGTCAATTTAACCCCTTCAAGGAATTTCAAAGAAGCCCATGGAATTCAACAATGGTGGCGAGAGAATCAGCACTTGCAGTCTGAGACTTACAGATACAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

391

Amino Acids

44.21

Weight (kDa)

8.68

Isoelectric Point (pI)

34.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05260 AT2G05260 AT4G10955 AT4G10955
fragaria_vesca	FvH4_5g04751 FvH4_5g04751 FvH4_5g04760
malus_domestica	MD06G1108800.v1.1 MD14G1129700.v1.1
prunus_persica	Prupe.5G121400_v2.0.a1 Prupe.5G121400_v2.0.a1 Prupe.5G121600_v2.0.a1
pyrus_communis	pycom06g10220
rosa_chinensis	RchiOBHm_Chr7g0194501 RchiOBHm_Chr7g0194511
rosa_laevigata	RLG00000004195 RLG00000004196 RLG00000023363 RLG00000023364
rosa_multiflora	Rmu_co8167496.1_g000001 Rmu_co8479523.1_g000001 Rmu_sc0041088.1_g000001 Rmu_ssc0000261.1_g000021
rosa_roxburghii	Rroxscaffold_3G00261290 Rroxscaffold_3G00261300
rosa_rugosa	Rorug07G0016000
rosa_samantha	Rh7AG143400 Rh7AG143500 Rh7BG143900 Rh7BG144000 Rh7CG147600 Rh7CG147700 Rh7DG145200 Rh7DG145300
rosa_wichuraiana	Rw7G012280 Rw7G012290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	587
Acc36I	ACCTGC	1 cut(s)	587
AccB1I	GGYRCC	2 cut(s)	356, 467
AccB7I	CCANNNNNTGG	1 cut(s)	634
AccBSI	CCGCTC	1 cut(s)	976
AccII	CGCG	2 cut(s)	479, 496
AciI	CCGC	4 cut(s)	244, 477, 800, 976
AclI	AACGTT	1 cut(s)	100
AclWI	GGATC	2 cut(s)	752, 839
AcoI	YGGCCR	2 cut(s)	625, 672
AcsI	RAATTY	3 cut(s)	991, 1096, 1116
AfaI	GTAC	1 cut(s)	409
AfiI	CCNNNNNNNGG	4 cut(s)	583, 634, 854, 1092
AgsI	TTSAA	6 cut(s)	307, 709, 996, 1092, 1102, 1121
AjnI	CCWGG	2 cut(s)	486, 827
AluBI	AGCT	6 cut(s)	88, 238, 581, 623, 766, 815
AluI	AGCT	6 cut(s)	88, 238, 581, 623, 766, 815
Alw26I	GTCTC	3 cut(s)	496, 1025, 1151
AlwI	GGATC	2 cut(s)	752, 839
Ama87I	CYCGRG	1 cut(s)	266
AoxI	GGCC	3 cut(s)	270, 625, 672
ApeKI	GCWGC	1 cut(s)	203
ApoI	RAATTY	3 cut(s)	991, 1096, 1116
Asp700I	GAANNNNTTC	1 cut(s)	870
AspS9I	GGNCC	3 cut(s)	146, 241, 263
AsuC2I	CCSGG	1 cut(s)	784
AsuHPI	GGTGA	2 cut(s)	611, 908
AsuII	TTCGAA	1 cut(s)	930
AsuNHI	GCTAGC	1 cut(s)	619
AvaI	CYCGRG	1 cut(s)	266
AvaII	GGWCC	3 cut(s)	146, 241, 263
BalI	TGGCCA	2 cut(s)	627, 674
BanI	GGYRCC	2 cut(s)	356, 467
BauI	CACGAG	1 cut(s)	752
BbvI	GCAGC	1 cut(s)	190
BccI	CCATC	2 cut(s)	730, 940
BciT130I	CCWGG	2 cut(s)	488, 829
BclI	TGATCA	1 cut(s)	184
BcnI	CCSGG	1 cut(s)	784
BcoDI	GTCTC	3 cut(s)	496, 1025, 1151
BfaI	CTAG	3 cut(s)	620, 876, 1059
BfuAI	ACCTGC	1 cut(s)	587
BglII	AGATCT	1 cut(s)	499
BisI	GCNGC	1 cut(s)	204
BlsI	GCNGC	1 cut(s)	205
Bme1390I	CCNGG	3 cut(s)	488, 784, 829
Bme18I	GGWCC	3 cut(s)	146, 241, 263
BmeT110I	CYCGRG	1 cut(s)	266
BmgT120I	GGNCC	3 cut(s)	146, 241, 263
BmiI	GGNNCC	6 cut(s)	265, 279, 346, 358, 469, 873
BmrFI	CCNGG	3 cut(s)	488, 784, 829
BmsI	GCATC	2 cut(s)	136, 322
BmtI	GCTAGC	1 cut(s)	623
Bpu14I	TTCGAA	1 cut(s)	930
BpuEI	CTTGAG	2 cut(s)	254, 500
BpuMI	CCSGG	1 cut(s)	784
BsaBI	GATNNNNATC	1 cut(s)	126
BsaI	GGTCTC	1 cut(s)	496
BsaJI	CCNNGG	7 cut(s)	267, 273, 284, 463, 633, 675, 1111
Bsc4I	CCNNNNNNNGG	4 cut(s)	583, 634, 854, 1092
Bse1I	ACTGG	5 cut(s)	176, 207, 327, 336, 810
Bse3DI	GCAATG	1 cut(s)	657
Bse8I	GATNNNNATC	1 cut(s)	126
BseBI	CCWGG	2 cut(s)	488, 829
BseDI	CCNNGG	7 cut(s)	267, 273, 284, 463, 633, 675, 1111
BseGI	GGATG	1 cut(s)	334
BseJI	GATNNNNATC	1 cut(s)	126
BseLI	CCNNNNNNNGG	4 cut(s)	583, 634, 854, 1092
BseMI	GCAATG	1 cut(s)	657
BseMII	CTCAG	1 cut(s)	1146
BseNI	ACTGG	5 cut(s)	176, 207, 327, 336, 810
BseRI	GAGGAG	3 cut(s)	270, 369, 378
BseXI	GCAGC	1 cut(s)	190
Bsh1236I	CGCG	2 cut(s)	479, 496
BshFI	GGCC	3 cut(s)	272, 627, 674
BshNI	GGYRCC	2 cut(s)	356, 467
BsiHKCI	CYCGRG	1 cut(s)	266
BsiSI	CCGG	1 cut(s)	784
BslFI	GGGAC	2 cut(s)	496, 816
BslI	CCNNNNNNNGG	4 cut(s)	583, 634, 854, 1092
BsmAI	GTCTC	3 cut(s)	496, 1025, 1151
BsmFI	GGGAC	2 cut(s)	496, 816
BsnI	GGCC	3 cut(s)	272, 627, 674
Bso31I	GGTCTC	1 cut(s)	496
BsoBI	CYCGRG	1 cut(s)	266
Bsp119I	TTCGAA	1 cut(s)	930
Bsp143I	GATC	4 cut(s)	184, 499, 744, 844
Bsp19I	CCATGG	2 cut(s)	633, 1111
Bsp68I	TCGCGA	1 cut(s)	496
BspACI	CCGC	4 cut(s)	244, 477, 800, 976
BspANI	GGCC	3 cut(s)	272, 627, 674
BspCNI	CTCAG	1 cut(s)	1147
BspFNI	CGCG	2 cut(s)	479, 496
BspLI	GGNNCC	6 cut(s)	265, 279, 346, 358, 469, 873
BspMI	ACCTGC	1 cut(s)	587
BspOI	GCTAGC	1 cut(s)	623
BspPI	GGATC	2 cut(s)	752, 839
BspT104I	TTCGAA	1 cut(s)	930
BspT107I	GGYRCC	2 cut(s)	356, 467
BspTNI	GGTCTC	1 cut(s)	496
BsrBI	CCGCTC	1 cut(s)	976
BsrDI	GCAATG	1 cut(s)	657
BsrI	ACTGG	5 cut(s)	176, 207, 327, 336, 810
BssECI	CCNNGG	7 cut(s)	267, 273, 284, 463, 633, 675, 1111
BssMI	GATC	4 cut(s)	184, 499, 744, 844
BssSI	CACGAG	1 cut(s)	752
BssT1I	CCWWGG	5 cut(s)	273, 284, 633, 675, 1111
Bst2BI	CACGAG	1 cut(s)	752
Bst2UI	CCWGG	2 cut(s)	488, 829
Bst4CI	ACNGT	3 cut(s)	182, 586, 1075
Bst6I	CTCTTC	2 cut(s)	403, 710
BstAPI	GCANNNNNTGC	1 cut(s)	656
BstBI	TTCGAA	1 cut(s)	930
BstC8I	GCNNGC	5 cut(s)	86, 570, 621, 625, 657
BstDEI	CTNAG	2 cut(s)	89, 1155
BstDSI	CCRYGG	3 cut(s)	463, 633, 1111
BstF5I	GGATG	1 cut(s)	334
BstFNI	CGCG	2 cut(s)	479, 496
BstKTI	GATC	4 cut(s)	187, 502, 747, 847
BstMAI	GTCTC	3 cut(s)	496, 1025, 1151
BstMBI	GATC	4 cut(s)	184, 499, 744, 844
BstMWI	GCNNNNNNNGC	6 cut(s)	94, 569, 578, 656, 806, 1045
BstNI	CCWGG	2 cut(s)	488, 829
BstSCI	CCNGG	3 cut(s)	486, 782, 827
BstUI	CGCG	2 cut(s)	479, 496
BstV1I	GCAGC	1 cut(s)	190
BstX2I	RGATCY	2 cut(s)	499, 844
BstYI	RGATCY	2 cut(s)	499, 844
BsuRI	GGCC	3 cut(s)	272, 627, 674
BtgI	CCRYGG	3 cut(s)	463, 633, 1111
BtsCI	GGATG	1 cut(s)	334
BtsI	GCAGTG	1 cut(s)	795
BtsIMutI	CAGTG	3 cut(s)	187, 320, 795
BtuMI	TCGCGA	1 cut(s)	496
BveI	ACCTGC	1 cut(s)	587
Cac8I	GCNNGC	5 cut(s)	86, 570, 621, 625, 657
Cfr13I	GGNCC	3 cut(s)	146, 241, 263
CsiI	ACCWGGT	2 cut(s)	486, 827
Csp6I	GTAC	1 cut(s)	408
CspCI	CAANNNNNGTGG	2 cut(s)	1109, 1144
CviAII	CATG	3 cut(s)	383, 634, 1112
CviQI	GTAC	1 cut(s)	408
DdeI	CTNAG	2 cut(s)	89, 1155
DpnI	GATC	4 cut(s)	186, 501, 746, 846
DpnII	GATC	4 cut(s)	184, 499, 744, 844
DraI	TTTAAA	1 cut(s)	373
EaeI	YGGCCR	2 cut(s)	625, 672
Eam1104I	CTCTTC	2 cut(s)	403, 710
EarI	CTCTTC	2 cut(s)	403, 710
Eco130I	CCWWGG	5 cut(s)	273, 284, 633, 675, 1111
Eco147I	AGGCCT	1 cut(s)	272
Eco31I	GGTCTC	1 cut(s)	496
Eco47I	GGWCC	3 cut(s)	146, 241, 263
Eco88I	CYCGRG	1 cut(s)	266
EcoO109I	RGGNCCY	1 cut(s)	263
EcoRI	GAATTC	2 cut(s)	991, 1116
EcoRII	CCWGG	2 cut(s)	486, 827
EcoT14I	CCWWGG	5 cut(s)	273, 284, 633, 675, 1111
ErhI	CCWWGG	5 cut(s)	273, 284, 633, 675, 1111
FaeI	CATG	3 cut(s)	386, 637, 1115
FalI	AAGNNNNNCTT	2 cut(s)	116, 148
FaqI	GGGAC	2 cut(s)	496, 816
FatI	CATG	3 cut(s)	382, 633, 1111
FauI	CCCGC	1 cut(s)	793
FbaI	TGATCA	1 cut(s)	184
Fnu4HI	GCNGC	1 cut(s)	204
FokI	GGATG	1 cut(s)	341
Fsp4HI	GCNGC	1 cut(s)	204
FspBI	CTAG	3 cut(s)	620, 876, 1059
GluI	GCNGC	1 cut(s)	204
HaeIII	GGCC	3 cut(s)	272, 627, 674
HapII	CCGG	1 cut(s)	784
Hin1II	CATG	3 cut(s)	386, 637, 1115
HindIII	AAGCTT	2 cut(s)	86, 764
HinfI	GANTC	4 cut(s)	602, 684, 889, 1138
HpaII	CCGG	1 cut(s)	784
HphI	GGTGA	2 cut(s)	611, 908
Hpy166II	GTNNAC	2 cut(s)	320, 795
Hpy188I	TCNGA	5 cut(s)	121, 159, 192, 835, 1156
Hpy188III	TCNNGA	6 cut(s)	57, 79, 144, 233, 495, 912
Hpy8I	GTNNAC	2 cut(s)	320, 795
HpyAV	CCTTC	3 cut(s)	254, 469, 1098
HpyCH4III	ACNGT	3 cut(s)	182, 586, 1075
HpyCH4IV	ACGT	1 cut(s)	100
HpyCH4V	TGCA	5 cut(s)	568, 1019, 1048, 1064, 1150
HpyF10VI	GCNNNNNNNGC	6 cut(s)	94, 569, 578, 656, 806, 1045
HpyF3I	CTNAG	2 cut(s)	89, 1155
HpySE526I	ACGT	1 cut(s)	100
Hsp92II	CATG	3 cut(s)	386, 637, 1115
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	4 cut(s)	184, 499, 744, 844
LmnI	GCTCC	3 cut(s)	283, 391, 959
Lsp1109I	GCAGC	1 cut(s)	190
LweI	GCATC	2 cut(s)	136, 322
MabI	ACCWGGT	2 cut(s)	486, 827
MaeI	CTAG	3 cut(s)	620, 876, 1059
MaeII	ACGT	1 cut(s)	100
MalI	GATC	4 cut(s)	186, 501, 746, 846
MbiI	CCGCTC	1 cut(s)	976
MboI	GATC	4 cut(s)	184, 499, 744, 844
MboII	GAAGA	8 cut(s)	187, 289, 390, 440, 697, 844, 854, 955
MfeI	CAATTG	1 cut(s)	996
MflI	RGATCY	2 cut(s)	499, 844
MlsI	TGGCCA	2 cut(s)	627, 674
MluCI	AATT	5 cut(s)	991, 996, 1078, 1096, 1116
MluNI	TGGCCA	2 cut(s)	627, 674
Mox20I	TGGCCA	2 cut(s)	627, 674
MroXI	GAANNNNTTC	1 cut(s)	870
MscI	TGGCCA	2 cut(s)	627, 674
MseI	TTAA	7 cut(s)	216, 372, 473, 504, 521, 555, 1082
Msp20I	TGGCCA	2 cut(s)	627, 674
MspI	CCGG	1 cut(s)	784
MspR9I	CCNGG	3 cut(s)	488, 784, 829
MssI	GTTTAAAC	1 cut(s)	373
MunI	CAATTG	1 cut(s)	996
MvaI	CCWGG	2 cut(s)	488, 829
MvnI	CGCG	2 cut(s)	479, 496
MwoI	GCNNNNNNNGC	6 cut(s)	94, 569, 578, 656, 806, 1045
NciI	CCSGG	1 cut(s)	784
NcoI	CCATGG	2 cut(s)	633, 1111
NdeII	GATC	4 cut(s)	184, 499, 744, 844
NheI	GCTAGC	1 cut(s)	619
NlaIII	CATG	3 cut(s)	386, 637, 1115
NlaIV	GGNNCC	6 cut(s)	265, 279, 346, 358, 469, 873
NruI	TCGCGA	1 cut(s)	496
NspV	TTCGAA	1 cut(s)	930
PaqCI	CACCTGC	1 cut(s)	587
PceI	AGGCCT	1 cut(s)	272
PdmI	GAANNNNTTC	1 cut(s)	870
PfeI	GAWTC	4 cut(s)	602, 684, 889, 1138
PflFI	GACNNNGTC	1 cut(s)	488
PflMI	CCANNNNNTGG	1 cut(s)	634
PkrI	GCNGC	1 cut(s)	205
PmeI	GTTTAAAC	1 cut(s)	373
PpuMI	RGGWCCY	1 cut(s)	263
Psp1406I	AACGTT	1 cut(s)	100
Psp5II	RGGWCCY	1 cut(s)	263
Psp6I	CCWGG	2 cut(s)	486, 827
PspGI	CCWGG	2 cut(s)	486, 827
PspN4I	GGNNCC	6 cut(s)	265, 279, 346, 358, 469, 873
PspPI	GGNCC	3 cut(s)	146, 241, 263
PspPPI	RGGWCCY	1 cut(s)	263
PsuI	RGATCY	2 cut(s)	499, 844
PsyI	GACNNNGTC	1 cut(s)	488
RruI	TCGCGA	1 cut(s)	496
RsaI	GTAC	1 cut(s)	409
RsaNI	GTAC	1 cut(s)	408
SaqAI	TTAA	7 cut(s)	216, 372, 473, 504, 521, 555, 1082
SatI	GCNGC	1 cut(s)	204
Sau3AI	GATC	4 cut(s)	184, 499, 744, 844
Sau96I	GGNCC	3 cut(s)	146, 241, 263
ScrFI	CCNGG	3 cut(s)	488, 784, 829
SexAI	ACCWGGT	2 cut(s)	486, 827
SfaNI	GCATC	2 cut(s)	136, 322
SfuI	TTCGAA	1 cut(s)	930
SinI	GGWCC	3 cut(s)	146, 241, 263
SmlI	CTYRAG	2 cut(s)	233, 515
SmoI	CTYRAG	2 cut(s)	233, 515
Sse9I	AATT	5 cut(s)	991, 996, 1078, 1096, 1116
SseBI	AGGCCT	1 cut(s)	272
SsiI	CCGC	4 cut(s)	244, 477, 800, 976
SspI	AATATT	1 cut(s)	19
SspMI	CTAG	3 cut(s)	620, 876, 1059
StuI	AGGCCT	1 cut(s)	272
StyD4I	CCNGG	3 cut(s)	486, 782, 827
StyI	CCWWGG	5 cut(s)	273, 284, 633, 675, 1111
TaaI	ACNGT	3 cut(s)	182, 586, 1075
TaiI	ACGT	1 cut(s)	103
TaqI	TCGA	1 cut(s)	930
TaqII	GACCGA	1 cut(s)	845
TasI	AATT	5 cut(s)	991, 996, 1078, 1096, 1116
TfiI	GAWTC	4 cut(s)	602, 684, 889, 1138
Tru1I	TTAA	7 cut(s)	216, 372, 473, 504, 521, 555, 1082
Tru9I	TTAA	7 cut(s)	216, 372, 473, 504, 521, 555, 1082
TscAI	CASTG	3 cut(s)	187, 327, 802
TseI	GCWGC	1 cut(s)	203
TspDTI	ATGAA	3 cut(s)	447, 594, 879
TspGWI	ACGGA	3 cut(s)	54, 452, 696
TspRI	CASTG	3 cut(s)	187, 327, 802
Tth111I	GACNNNGTC	1 cut(s)	488
Van91I	CCANNNNNTGG	1 cut(s)	634
VpaK11BI	GGWCC	3 cut(s)	146, 241, 263
XapI	RAATTY	3 cut(s)	991, 1096, 1116
XcmI	CCANNNNNNNNNTGG	2 cut(s)	584, 995
XmnI	GAANNNNTTC	1 cut(s)	870
XspI	CTAG	3 cut(s)	620, 876, 1059

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.