Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0003376

Physical Location & Seq

Genomic Coordinates Reverse (-)

22567243 .. 22568330

Gene Structure 1088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023364

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGTTGGAATCTGGGTTCATGTTGAATTCTGAGTTCACGTTGACGAAGTCGAAAGAAGCTTATGTCGAGATTCCATATGAATCTGAGAGAGATAGAGAGAAGATGAGAGCTGCAGAATTGAAAATTTGTGTCATCCTATGCAGGGAAAATACTCATCATCAAAGGTCTGTTGCTGCTAGTTTGGTTCAGGGTGTCTACGTTGTTGAGAGCGACCGCCAAGAGAAGCGTGAAGGTTCTAGGGCCCTTGCTCCTCCTTGGTGGGAGTTCTTTCATTTTAAGTTGCTCCGTAAACTAGTGGATGATGTTGGGCTTTCCATCTTTGGTGTCATTTATGAATTCAAGCCTCCCCCGTCCATTGGTCACCACTCACTGAAGGGAAGACCTTGTTTTGTAATTGCCTTCCAAGGCACCTTGATCAAGTCCGACTCTATCTCACGAGATCTTGAGTTAGATGTTGAGGTCATCCGCAATGGACTTCACCAAACCTCCCGTTTTGAGATTGCTATATGGTTGCTGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

174

Amino Acids

19.96

Weight (kDa)

6.6

Isoelectric Point (pI)

27.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05260 AT2G05260 AT4G10955 AT4G10955
fragaria_vesca	FvH4_5g04751 FvH4_5g04751 FvH4_5g04760
malus_domestica	MD06G1108800.v1.1 MD14G1129700.v1.1
prunus_persica	Prupe.5G121400_v2.0.a1 Prupe.5G121400_v2.0.a1 Prupe.5G121600_v2.0.a1
pyrus_communis	pycom06g10220
rosa_chinensis	RchiOBHm_Chr7g0194501 RchiOBHm_Chr7g0194511
rosa_laevigata	RLG00000004195 RLG00000004196 RLG00000023363 RLG00000023364
rosa_multiflora	Rmu_co8167496.1_g000001 Rmu_co8479523.1_g000001 Rmu_sc0041088.1_g000001 Rmu_ssc0000261.1_g000021
rosa_roxburghii	Rroxscaffold_3G00261290 Rroxscaffold_3G00261300
rosa_rugosa	Rorug07G0016000
rosa_samantha	Rh7AG143400 Rh7AG143500 Rh7BG143900 Rh7BG144000 Rh7CG147600 Rh7CG147700 Rh7DG145200 Rh7DG145300
rosa_wichuraiana	Rw7G012280 Rw7G012290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	407
AccI	GTMKAC	1 cut(s)	195
AciI	CCGC	2 cut(s)	214, 466
AcsI	RAATTY	3 cut(s)	25, 123, 335
AcuI	CTGAAG	1 cut(s)	392
AfiI	CCNNNNNNNGG	2 cut(s)	142, 356
AgsI	TTSAA	3 cut(s)	25, 121, 340
AhlI	ACTAGT	1 cut(s)	292
AloI	GAACNNNNNNTCC	1 cut(s)	31
AluBI	AGCT	2 cut(s)	59, 110
AluI	AGCT	2 cut(s)	59, 110
AoxI	GGCC	1 cut(s)	240
ApaI	GGGCCC	1 cut(s)	244
ApeKI	GCWGC	3 cut(s)	110, 173, 514
ApoI	RAATTY	3 cut(s)	25, 123, 335
AspS9I	GGNCC	2 cut(s)	240, 241
AsuHPI	GGTGA	2 cut(s)	353, 470
BaeGI	GKGCMC	1 cut(s)	244
BanI	GGYRCC	1 cut(s)	407
BanII	GRGCYC	1 cut(s)	244
BauI	CACGAG	1 cut(s)	435
BbsI	GAAGAC	1 cut(s)	385
BbvI	GCAGC	3 cut(s)	97, 160, 501
BccI	CCATC	1 cut(s)	323
BclI	TGATCA	1 cut(s)	414
BcuI	ACTAGT	1 cut(s)	292
BfaI	CTAG	3 cut(s)	177, 237, 293
BfmI	CTRYAG	2 cut(s)	111, 518
BglII	AGATCT	1 cut(s)	439
BisI	GCNGC	3 cut(s)	111, 174, 515
BlsI	GCNGC	3 cut(s)	112, 175, 516
BmgT120I	GGNCC	2 cut(s)	240, 241
BmiI	GGNNCC	2 cut(s)	242, 409
BpiI	GAAGAC	1 cut(s)	385
BpuEI	CTTGAG	1 cut(s)	464
BsaJI	CCNNGG	2 cut(s)	254, 403
BsaXI	ACNNNNNCTCC	2 cut(s)	470, 500
Bsc4I	CCNNNNNNNGG	2 cut(s)	142, 356
Bse3DI	GCAATG	1 cut(s)	475
BseDI	CCNNGG	2 cut(s)	254, 403
BseGI	GGATG	3 cut(s)	132, 304, 462
BseLI	CCNNNNNNNGG	2 cut(s)	142, 356
BseMI	GCAATG	1 cut(s)	475
BseMII	CTCAG	2 cut(s)	21, 75
BseRI	GAGGAG	1 cut(s)	240
BseSI	GKGCMC	1 cut(s)	244
BseXI	GCAGC	3 cut(s)	97, 160, 501
Bsh1285I	CGRYCG	1 cut(s)	214
BshFI	GGCC	1 cut(s)	242
BshNI	GGYRCC	1 cut(s)	407
BsiEI	CGRYCG	1 cut(s)	214
BslI	CCNNNNNNNGG	2 cut(s)	142, 356
BsnI	GGCC	1 cut(s)	242
Bsp120I	GGGCCC	1 cut(s)	240
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp143I	GATC	2 cut(s)	414, 439
BspACI	CCGC	2 cut(s)	214, 466
BspANI	GGCC	1 cut(s)	242
BspCNI	CTCAG	2 cut(s)	22, 76
BspLI	GGNNCC	2 cut(s)	242, 409
BspMAI	CTGCAG	1 cut(s)	115
BspT107I	GGYRCC	1 cut(s)	407
BsrDI	GCAATG	1 cut(s)	475
BssECI	CCNNGG	2 cut(s)	254, 403
BssMI	GATC	2 cut(s)	414, 439
BssSI	CACGAG	1 cut(s)	435
BssT1I	CCWWGG	2 cut(s)	254, 403
Bst2BI	CACGAG	1 cut(s)	435
BstDEI	CTNAG	2 cut(s)	30, 84
BstEII	GGTNACC	1 cut(s)	359
BstF5I	GGATG	3 cut(s)	132, 304, 462
BstKTI	GATC	2 cut(s)	417, 442
BstMBI	GATC	2 cut(s)	414, 439
BstMCI	CGRYCG	1 cut(s)	214
BstPI	GGTNACC	1 cut(s)	359
BstSFI	CTRYAG	2 cut(s)	111, 518
BstSLI	GKGCMC	1 cut(s)	244
BstV1I	GCAGC	3 cut(s)	97, 160, 501
BstV2I	GAAGAC	1 cut(s)	385
BstX2I	RGATCY	1 cut(s)	439
BstYI	RGATCY	1 cut(s)	439
BsuRI	GGCC	1 cut(s)	242
BtsCI	GGATG	3 cut(s)	132, 304, 462
BtsIMutI	CAGTG	1 cut(s)	368
Cfr13I	GGNCC	2 cut(s)	240, 241
CviAII	CATG	1 cut(s)	19
CviJI	RGCY	5 cut(s)	59, 110, 242, 310, 343
CviKI_1	RGCY	5 cut(s)	59, 110, 242, 310, 343
DdeI	CTNAG	2 cut(s)	30, 84
DpnI	GATC	2 cut(s)	416, 441
DpnII	GATC	2 cut(s)	414, 439
Eco130I	CCWWGG	2 cut(s)	254, 403
Eco24I	GRGCYC	1 cut(s)	244
Eco57I	CTGAAG	1 cut(s)	392
Eco91I	GGTNACC	1 cut(s)	359
EcoO109I	RGGNCCY	2 cut(s)	240, 241
EcoO65I	GGTNACC	1 cut(s)	359
EcoRI	GAATTC	2 cut(s)	25, 335
EcoT14I	CCWWGG	2 cut(s)	254, 403
EcoT38I	GRGCYC	1 cut(s)	244
ErhI	CCWWGG	2 cut(s)	254, 403
FaeI	CATG	1 cut(s)	22
FaiI	YATR	8 cut(s)	20, 63, 76, 78, 139, 333, 506, 508
FatI	CATG	1 cut(s)	18
FauNDI	CATATG	1 cut(s)	76
FbaI	TGATCA	1 cut(s)	414
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	3 cut(s)	111, 174, 515
FokI	GGATG	3 cut(s)	119, 311, 449
FriOI	GRGCYC	1 cut(s)	244
Fsp4HI	GCNGC	3 cut(s)	111, 174, 515
FspBI	CTAG	3 cut(s)	177, 237, 293
GluI	GCNGC	3 cut(s)	111, 174, 515
HaeIII	GGCC	1 cut(s)	242
Hin1II	CATG	1 cut(s)	22
HincII	GTYRAC	1 cut(s)	42
HindII	GTYRAC	1 cut(s)	42
HindIII	AAGCTT	1 cut(s)	57
HinfI	GANTC	4 cut(s)	8, 70, 80, 425
HphI	GGTGA	2 cut(s)	353, 470
Hpy166II	GTNNAC	4 cut(s)	36, 42, 196, 290
Hpy188I	TCNGA	3 cut(s)	31, 85, 424
Hpy188III	TCNNGA	3 cut(s)	67, 435, 443
Hpy8I	GTNNAC	4 cut(s)	36, 42, 196, 290
HpyAV	CCTTC	3 cut(s)	224, 367, 409
HpyCH4IV	ACGT	2 cut(s)	38, 198
HpyCH4V	TGCA	2 cut(s)	113, 141
HpyF3I	CTNAG	2 cut(s)	30, 84
HpySE526I	ACGT	2 cut(s)	38, 198
Hsp92II	CATG	1 cut(s)	22
Ksp22I	TGATCA	1 cut(s)	414
Kzo9I	GATC	2 cut(s)	414, 439
LmnI	GCTCC	2 cut(s)	253, 288
LpnPI	CCDG	2 cut(s)	127, 173
Lsp1109I	GCAGC	3 cut(s)	97, 160, 501
MaeI	CTAG	3 cut(s)	177, 237, 293
MaeII	ACGT	2 cut(s)	38, 198
MaeIII	GTNAC	1 cut(s)	359
MalI	GATC	2 cut(s)	416, 441
MboI	GATC	2 cut(s)	414, 439
MboII	GAAGA	2 cut(s)	112, 390
MflI	RGATCY	1 cut(s)	439
MhlI	GDGCHC	1 cut(s)	244
MluCI	AATT	5 cut(s)	25, 116, 123, 335, 393
MlyI	GAGTC	1 cut(s)	419
MmeI	TCCRAC	1 cut(s)	447
MnlI	CCTC	4 cut(s)	261, 354, 451, 496
MseI	TTAA	1 cut(s)	276
NdeI	CATATG	1 cut(s)	76
NdeII	GATC	2 cut(s)	414, 439
NlaIII	CATG	1 cut(s)	22
NlaIV	GGNNCC	2 cut(s)	242, 409
NmuCI	GTSAC	1 cut(s)	359
PfeI	GAWTC	3 cut(s)	8, 70, 80
PflFI	GACNNNGTC	1 cut(s)	46
PkrI	GCNGC	3 cut(s)	112, 175, 516
PleI	GAGTC	1 cut(s)	419
PpsI	GAGTC	1 cut(s)	419
PspEI	GGTNACC	1 cut(s)	359
PspN4I	GGNNCC	2 cut(s)	242, 409
PspOMI	GGGCCC	1 cut(s)	240
PspPI	GGNCC	2 cut(s)	240, 241
PstI	CTGCAG	1 cut(s)	115
PsuI	RGATCY	1 cut(s)	439
PsyI	GACNNNGTC	1 cut(s)	46
SaqAI	TTAA	1 cut(s)	276
SatI	GCNGC	3 cut(s)	111, 174, 515
Sau3AI	GATC	2 cut(s)	414, 439
Sau96I	GGNCC	2 cut(s)	240, 241
SchI	GAGTC	1 cut(s)	419
SduI	GDGCHC	1 cut(s)	244
SfcI	CTRYAG	2 cut(s)	111, 518
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
SpeI	ACTAGT	1 cut(s)	292
Sse9I	AATT	5 cut(s)	25, 116, 123, 335, 393
SsiI	CCGC	2 cut(s)	214, 466
SspMI	CTAG	3 cut(s)	177, 237, 293
StyI	CCWWGG	2 cut(s)	254, 403
TaiI	ACGT	2 cut(s)	41, 201
TaqI	TCGA	2 cut(s)	50, 66
TasI	AATT	5 cut(s)	25, 116, 123, 335, 393
TfiI	GAWTC	3 cut(s)	8, 70, 80
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TscAI	CASTG	1 cut(s)	375
TseFI	GTSAC	1 cut(s)	359
TseI	GCWGC	3 cut(s)	110, 173, 514
Tsp45I	GTSAC	1 cut(s)	359
TspDTI	ATGAA	4 cut(s)	7, 93, 260, 348
TspGWI	ACGGA	1 cut(s)	275
TspRI	CASTG	1 cut(s)	375
Tth111I	GACNNNGTC	1 cut(s)	46
XapI	RAATTY	3 cut(s)	25, 123, 335
XmiI	GTMKAC	1 cut(s)	195
XspI	CTAG	3 cut(s)	177, 237, 293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.