Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003376

Physical Location & Seq

Genomic Coordinates Forward (+)

55614970 .. 55620330

Gene Structure 5361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00261300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGATGATGAGCAATATTTGTGTGGGTTATTATCACGGAGTATTTGATAGTTCTGGAAAAGAGAAAGGGTATATCAAGAGCAAGCTTAGAGAGCAACGTTGGTGTCAAATGGTTTCTGATAAGCATCTCTTTTATGTTTCAGGACCAACACATCTGACTTCTATTGACTGGAAGAACAGTGATCATCAGAGGTCTGTTGCTGCCAGTTTGGTTCAGGGAGTCAAAGTTCTTGAGCTGGACCGCCAAGAGAAGCGTGAAGGGCCCGAGGCCTTGGCTCCTCCTTGGTGGGAGTTCTTCCGTTTCAAGTTGCATCGTCCACTGGTGGATGATGCCAGTTGTGGTTCCATTTTCGGTGCCATTTATGAGTTTAAACCTCCTCATGCTCCTCCTTTCTCTTCTCTTGGTACAAAACATTCATTATTGGAAGATGAAAACAGCCCTCATTATGTTATTGCCTTCCGTGGCACCTTAACCGCATATGACCTGGTCTCGCGAGATCTTAACTTGTCCCTCAAGCTAATCAAAAATGGACTTCACAAGACATCTCGCTATAAGACTGCTATGCAAGCAATCCAAGCTACGGTTGGGAAAGCAGGTGATTCATTAAGCGTTTGGCTGGCTGGCCATTCCATGGGTTCAGTATTGGCAATGCTTGCTGGAAAAACAATGGCCAAGGACGGAATCTTACTCAAATCTTTTCTCTTCAATCAACCATTTGTTTCCGTTGCCCCAATGGAGAGGATCAAGCAGGAGAATATCAAGCTTGGTATTCGCTTTGCTCGGAGTGTGTTCACTGCAGGACTCGCTAAAGCTGTAAATCCCACCTGGTCAGAACACGAAGATCCATTCTTCGGTCTTTATGAATGGGTTCCTAGTGTATTTGTGAATCAAGGTGATGACTTCTGCTCTGGATATATTGGTTATTTCGAACATAGAAAGAAGATGGTAGAGATTGGAGCAGGAGGCATTGAGAGGTTAGCAACCCAGAATTCAATTGGGAGTTTATTGAGGTATGCAATAGGAAAGGAGACAGAGCCACCAATGCACCTCATTCCTTGTGCAAACCTCACAGTCAATTTAACCCCTTCAAGGAATTTCAAAGAAGCCCATGCAATTCGACAATGGTGGCTAGAGAATCAGCACTTGCAGTCTGAGACTTACAGATACAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

390

Amino Acids

44.08

Weight (kDa)

9.08

Isoelectric Point (pI)

35.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05260 AT2G05260 AT4G10955 AT4G10955
fragaria_vesca	FvH4_5g04751 FvH4_5g04751 FvH4_5g04760
malus_domestica	MD06G1108800.v1.1 MD14G1129700.v1.1
prunus_persica	Prupe.5G121400_v2.0.a1 Prupe.5G121400_v2.0.a1 Prupe.5G121600_v2.0.a1
pyrus_communis	pycom06g10220
rosa_chinensis	RchiOBHm_Chr7g0194501 RchiOBHm_Chr7g0194511
rosa_laevigata	RLG00000004195 RLG00000004196 RLG00000023363 RLG00000023364
rosa_multiflora	Rmu_co8167496.1_g000001 Rmu_co8479523.1_g000001 Rmu_sc0041088.1_g000001 Rmu_ssc0000261.1_g000021
rosa_roxburghii	Rroxscaffold_3G00261290 Rroxscaffold_3G00261300
rosa_rugosa	Rorug07G0016000
rosa_samantha	Rh7AG143400 Rh7AG143500 Rh7BG143900 Rh7BG144000 Rh7CG147600 Rh7CG147700 Rh7DG145200 Rh7DG145300
rosa_wichuraiana	Rw7G012280 Rw7G012290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	584
Acc36I	ACCTGC	1 cut(s)	584
AccB1I	GGYRCC	2 cut(s)	353, 464
AccB7I	CCANNNNNTGG	1 cut(s)	631
AccII	CGCG	1 cut(s)	493
AciI	CCGC	2 cut(s)	241, 474
AclI	AACGTT	1 cut(s)	97
AclWI	GGATC	2 cut(s)	749, 836
AcoI	YGGCCR	2 cut(s)	622, 669
AcsI	RAATTY	2 cut(s)	988, 1093
AfaI	GTAC	1 cut(s)	406
AfiI	CCNNNNNNNGG	4 cut(s)	580, 631, 851, 1089
AgsI	TTSAA	5 cut(s)	304, 706, 993, 1089, 1099
AjnI	CCWGG	2 cut(s)	483, 824
AloI	GAACNNNNNNTCC	2 cut(s)	210, 242
AluBI	AGCT	6 cut(s)	85, 235, 517, 578, 763, 812
AluI	AGCT	6 cut(s)	85, 235, 517, 578, 763, 812
Alw26I	GTCTC	3 cut(s)	493, 1022, 1148
AlwI	GGATC	2 cut(s)	749, 836
Ama87I	CYCGRG	1 cut(s)	263
AoxI	GGCC	4 cut(s)	260, 267, 622, 669
ApaI	GGGCCC	1 cut(s)	264
ApeKI	GCWGC	1 cut(s)	200
ApoI	RAATTY	2 cut(s)	988, 1093
Asp700I	GAANNNNTTC	1 cut(s)	867
AspS9I	GGNCC	4 cut(s)	143, 238, 260, 261
AsuHPI	GGTGA	2 cut(s)	608, 905
AsuII	TTCGAA	1 cut(s)	927
AvaI	CYCGRG	1 cut(s)	263
AvaII	GGWCC	2 cut(s)	143, 238
BaeGI	GKGCMC	1 cut(s)	264
BalI	TGGCCA	2 cut(s)	624, 671
BanI	GGYRCC	2 cut(s)	353, 464
BanII	GRGCYC	1 cut(s)	264
BbvI	GCAGC	1 cut(s)	187
BccI	CCATC	1 cut(s)	937
BciT130I	CCWGG	2 cut(s)	485, 826
BclI	TGATCA	1 cut(s)	181
BcoDI	GTCTC	3 cut(s)	493, 1022, 1148
BfaI	CTAG	2 cut(s)	873, 1130
BfmI	CTRYAG	1 cut(s)	795
BfuAI	ACCTGC	1 cut(s)	584
BglII	AGATCT	1 cut(s)	496
BisI	GCNGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	202
Bme1390I	CCNGG	2 cut(s)	485, 826
Bme18I	GGWCC	2 cut(s)	143, 238
BmeT110I	CYCGRG	1 cut(s)	263
BmgT120I	GGNCC	4 cut(s)	143, 238, 260, 261
BmiI	GGNNCC	6 cut(s)	262, 276, 343, 355, 466, 870
BmrFI	CCNGG	2 cut(s)	485, 826
BmsI	GCATC	3 cut(s)	133, 319, 319
Bpu14I	TTCGAA	1 cut(s)	927
BpuEI	CTTGAG	2 cut(s)	251, 497
BsaBI	GATNNNNATC	1 cut(s)	123
BsaI	GGTCTC	1 cut(s)	493
BsaJI	CCNNGG	6 cut(s)	264, 270, 281, 460, 630, 672
BsaXI	ACNNNNNCTCC	2 cut(s)	210, 240
Bsc4I	CCNNNNNNNGG	4 cut(s)	580, 631, 851, 1089
Bse1I	ACTGG	4 cut(s)	173, 204, 324, 333
Bse3DI	GCAATG	1 cut(s)	654
Bse8I	GATNNNNATC	1 cut(s)	123
BseBI	CCWGG	2 cut(s)	485, 826
BseDI	CCNNGG	6 cut(s)	264, 270, 281, 460, 630, 672
BseGI	GGATG	1 cut(s)	331
BseJI	GATNNNNATC	1 cut(s)	123
BseLI	CCNNNNNNNGG	4 cut(s)	580, 631, 851, 1089
BseMI	GCAATG	1 cut(s)	654
BseMII	CTCAG	1 cut(s)	1143
BseNI	ACTGG	4 cut(s)	173, 204, 324, 333
BseRI	GAGGAG	3 cut(s)	267, 366, 375
BseSI	GKGCMC	1 cut(s)	264
BseXI	GCAGC	1 cut(s)	187
Bsh1236I	CGCG	1 cut(s)	493
BshFI	GGCC	4 cut(s)	262, 269, 624, 671
BshNI	GGYRCC	2 cut(s)	353, 464
BsiHKCI	CYCGRG	1 cut(s)	263
BslFI	GGGAC	1 cut(s)	493
BslI	CCNNNNNNNGG	4 cut(s)	580, 631, 851, 1089
BsmAI	GTCTC	3 cut(s)	493, 1022, 1148
BsmFI	GGGAC	1 cut(s)	493
BsnI	GGCC	4 cut(s)	262, 269, 624, 671
Bso31I	GGTCTC	1 cut(s)	493
BsoBI	CYCGRG	1 cut(s)	263
Bsp119I	TTCGAA	1 cut(s)	927
Bsp120I	GGGCCC	1 cut(s)	260
Bsp1286I	GDGCHC	1 cut(s)	264
Bsp143I	GATC	4 cut(s)	181, 496, 741, 841
Bsp19I	CCATGG	1 cut(s)	630
Bsp68I	TCGCGA	1 cut(s)	493
BspACI	CCGC	2 cut(s)	241, 474
BspANI	GGCC	4 cut(s)	262, 269, 624, 671
BspCNI	CTCAG	1 cut(s)	1144
BspFNI	CGCG	1 cut(s)	493
BspLI	GGNNCC	6 cut(s)	262, 276, 343, 355, 466, 870
BspMAI	CTGCAG	1 cut(s)	799
BspMI	ACCTGC	1 cut(s)	584
BspPI	GGATC	2 cut(s)	749, 836
BspT104I	TTCGAA	1 cut(s)	927
BspT107I	GGYRCC	2 cut(s)	353, 464
BspTNI	GGTCTC	1 cut(s)	493
BsrDI	GCAATG	1 cut(s)	654
BsrI	ACTGG	4 cut(s)	173, 204, 324, 333
BssECI	CCNNGG	6 cut(s)	264, 270, 281, 460, 630, 672
BssMI	GATC	4 cut(s)	181, 496, 741, 841
BssT1I	CCWWGG	4 cut(s)	270, 281, 630, 672
Bst2UI	CCWGG	2 cut(s)	485, 826
Bst4CI	ACNGT	3 cut(s)	179, 583, 1072
Bst6I	CTCTTC	2 cut(s)	400, 707
BstAPI	GCANNNNNTGC	1 cut(s)	653
BstBI	TTCGAA	1 cut(s)	927
BstC8I	GCNNGC	5 cut(s)	83, 567, 618, 622, 654
BstDEI	CTNAG	2 cut(s)	86, 1152
BstDSI	CCRYGG	2 cut(s)	460, 630
BstF5I	GGATG	1 cut(s)	331
BstFNI	CGCG	1 cut(s)	493
BstKTI	GATC	4 cut(s)	184, 499, 744, 844
BstMAI	GTCTC	3 cut(s)	493, 1022, 1148
BstMBI	GATC	4 cut(s)	181, 496, 741, 841
BstMWI	GCNNNNNNNGC	7 cut(s)	91, 259, 566, 575, 653, 803, 1042
BstNI	CCWGG	2 cut(s)	485, 826
BstSCI	CCNGG	2 cut(s)	483, 824
BstSFI	CTRYAG	1 cut(s)	795
BstSLI	GKGCMC	1 cut(s)	264
BstUI	CGCG	1 cut(s)	493
BstV1I	GCAGC	1 cut(s)	187
BstX2I	RGATCY	2 cut(s)	496, 841
BstYI	RGATCY	2 cut(s)	496, 841
BsuRI	GGCC	4 cut(s)	262, 269, 624, 671
BtgI	CCRYGG	2 cut(s)	460, 630
BtsCI	GGATG	1 cut(s)	331
BtsI	GCAGTG	1 cut(s)	792
BtsIMutI	CAGTG	3 cut(s)	184, 317, 792
BtuMI	TCGCGA	1 cut(s)	493
BveI	ACCTGC	1 cut(s)	584
Cac8I	GCNNGC	5 cut(s)	83, 567, 618, 622, 654
Cfr13I	GGNCC	4 cut(s)	143, 238, 260, 261
CsiI	ACCWGGT	2 cut(s)	483, 824
Csp6I	GTAC	1 cut(s)	405
CviAII	CATG	3 cut(s)	380, 631, 1109
CviQI	GTAC	1 cut(s)	405
DdeI	CTNAG	2 cut(s)	86, 1152
DpnI	GATC	4 cut(s)	183, 498, 743, 843
DpnII	GATC	4 cut(s)	181, 496, 741, 841
DraI	TTTAAA	1 cut(s)	370
EaeI	YGGCCR	2 cut(s)	622, 669
Eam1104I	CTCTTC	2 cut(s)	400, 707
EarI	CTCTTC	2 cut(s)	400, 707
Eco130I	CCWWGG	4 cut(s)	270, 281, 630, 672
Eco147I	AGGCCT	1 cut(s)	269
Eco24I	GRGCYC	1 cut(s)	264
Eco31I	GGTCTC	1 cut(s)	493
Eco47I	GGWCC	2 cut(s)	143, 238
Eco88I	CYCGRG	1 cut(s)	263
EcoO109I	RGGNCCY	1 cut(s)	260
EcoRI	GAATTC	1 cut(s)	988
EcoRII	CCWGG	2 cut(s)	483, 824
EcoT14I	CCWWGG	4 cut(s)	270, 281, 630, 672
EcoT38I	GRGCYC	1 cut(s)	264
ErhI	CCWWGG	4 cut(s)	270, 281, 630, 672
FaeI	CATG	3 cut(s)	383, 634, 1112
FalI	AAGNNNNNCTT	2 cut(s)	113, 145
FaqI	GGGAC	1 cut(s)	493
FatI	CATG	3 cut(s)	379, 630, 1108
FauNDI	CATATG	1 cut(s)	478
FbaI	TGATCA	1 cut(s)	181
Fnu4HI	GCNGC	1 cut(s)	201
FokI	GGATG	1 cut(s)	338
FriOI	GRGCYC	1 cut(s)	264
Fsp4HI	GCNGC	1 cut(s)	201
FspBI	CTAG	2 cut(s)	873, 1130
GluI	GCNGC	1 cut(s)	201
HaeIII	GGCC	4 cut(s)	262, 269, 624, 671
Hin1II	CATG	3 cut(s)	383, 634, 1112
HindIII	AAGCTT	2 cut(s)	83, 761
HinfI	GANTC	6 cut(s)	219, 599, 681, 801, 886, 1135
HphI	GGTGA	2 cut(s)	608, 905
Hpy166II	GTNNAC	2 cut(s)	317, 792
Hpy188I	TCNGA	6 cut(s)	118, 156, 189, 783, 832, 1153
Hpy188III	TCNNGA	6 cut(s)	54, 76, 141, 230, 492, 909
Hpy8I	GTNNAC	2 cut(s)	317, 792
HpyAV	CCTTC	3 cut(s)	251, 466, 1095
HpyCH4III	ACNGT	3 cut(s)	179, 583, 1072
HpyCH4IV	ACGT	1 cut(s)	97
HpyCH4V	TGCA	8 cut(s)	310, 565, 797, 1016, 1045, 1061, 1112, 1147
HpyF10VI	GCNNNNNNNGC	7 cut(s)	91, 259, 566, 575, 653, 803, 1042
HpyF3I	CTNAG	2 cut(s)	86, 1152
HpySE526I	ACGT	1 cut(s)	97
Hsp92II	CATG	3 cut(s)	383, 634, 1112
Ksp22I	TGATCA	1 cut(s)	181
Kzo9I	GATC	4 cut(s)	181, 496, 741, 841
LmnI	GCTCC	3 cut(s)	280, 388, 956
Lsp1109I	GCAGC	1 cut(s)	187
LweI	GCATC	3 cut(s)	133, 319, 319
MabI	ACCWGGT	2 cut(s)	483, 824
MaeI	CTAG	2 cut(s)	873, 1130
MaeII	ACGT	1 cut(s)	97
MalI	GATC	4 cut(s)	183, 498, 743, 843
MboI	GATC	4 cut(s)	181, 496, 741, 841
MboII	GAAGA	8 cut(s)	184, 286, 387, 437, 694, 841, 851, 952
MfeI	CAATTG	1 cut(s)	993
MflI	RGATCY	2 cut(s)	496, 841
MhlI	GDGCHC	1 cut(s)	264
MlsI	TGGCCA	2 cut(s)	624, 671
MluCI	AATT	5 cut(s)	988, 993, 1075, 1093, 1113
MluNI	TGGCCA	2 cut(s)	624, 671
MlyI	GAGTC	2 cut(s)	228, 795
Mox20I	TGGCCA	2 cut(s)	624, 671
MroXI	GAANNNNTTC	1 cut(s)	867
MscI	TGGCCA	2 cut(s)	624, 671
MseI	TTAA	5 cut(s)	369, 470, 501, 605, 1079
Msp20I	TGGCCA	2 cut(s)	624, 671
MspR9I	CCNGG	2 cut(s)	485, 826
MssI	GTTTAAAC	1 cut(s)	370
MunI	CAATTG	1 cut(s)	993
MvaI	CCWGG	2 cut(s)	485, 826
MvnI	CGCG	1 cut(s)	493
MwoI	GCNNNNNNNGC	7 cut(s)	91, 259, 566, 575, 653, 803, 1042
NcoI	CCATGG	1 cut(s)	630
NdeI	CATATG	1 cut(s)	478
NdeII	GATC	4 cut(s)	181, 496, 741, 841
NlaIII	CATG	3 cut(s)	383, 634, 1112
NlaIV	GGNNCC	6 cut(s)	262, 276, 343, 355, 466, 870
NruI	TCGCGA	1 cut(s)	493
NspV	TTCGAA	1 cut(s)	927
PaqCI	CACCTGC	1 cut(s)	584
PceI	AGGCCT	1 cut(s)	269
PdmI	GAANNNNTTC	1 cut(s)	867
PfeI	GAWTC	4 cut(s)	599, 681, 886, 1135
PflFI	GACNNNGTC	1 cut(s)	485
PflMI	CCANNNNNTGG	1 cut(s)	631
PkrI	GCNGC	1 cut(s)	202
PleI	GAGTC	2 cut(s)	227, 795
PmeI	GTTTAAAC	1 cut(s)	370
PpsI	GAGTC	2 cut(s)	227, 795
Psp1406I	AACGTT	1 cut(s)	97
Psp6I	CCWGG	2 cut(s)	483, 824
PspGI	CCWGG	2 cut(s)	483, 824
PspN4I	GGNNCC	6 cut(s)	262, 276, 343, 355, 466, 870
PspOMI	GGGCCC	1 cut(s)	260
PspPI	GGNCC	4 cut(s)	143, 238, 260, 261
PstI	CTGCAG	1 cut(s)	799
PsuI	RGATCY	2 cut(s)	496, 841
PsyI	GACNNNGTC	1 cut(s)	485
RruI	TCGCGA	1 cut(s)	493
RsaI	GTAC	1 cut(s)	406
RsaNI	GTAC	1 cut(s)	405
SaqAI	TTAA	5 cut(s)	369, 470, 501, 605, 1079
SatI	GCNGC	1 cut(s)	201
Sau3AI	GATC	4 cut(s)	181, 496, 741, 841
Sau96I	GGNCC	4 cut(s)	143, 238, 260, 261
SchI	GAGTC	2 cut(s)	228, 795
ScrFI	CCNGG	2 cut(s)	485, 826
SduI	GDGCHC	1 cut(s)	264
SexAI	ACCWGGT	2 cut(s)	483, 824
SfaNI	GCATC	3 cut(s)	133, 319, 319
SfcI	CTRYAG	1 cut(s)	795
SfuI	TTCGAA	1 cut(s)	927
SinI	GGWCC	2 cut(s)	143, 238
SmlI	CTYRAG	2 cut(s)	230, 512
SmoI	CTYRAG	2 cut(s)	230, 512
Sse9I	AATT	5 cut(s)	988, 993, 1075, 1093, 1113
SseBI	AGGCCT	1 cut(s)	269
SsiI	CCGC	2 cut(s)	241, 474
SspI	AATATT	1 cut(s)	16
SspMI	CTAG	2 cut(s)	873, 1130
StuI	AGGCCT	1 cut(s)	269
StyD4I	CCNGG	2 cut(s)	483, 824
StyI	CCWWGG	4 cut(s)	270, 281, 630, 672
TaaI	ACNGT	3 cut(s)	179, 583, 1072
TaiI	ACGT	1 cut(s)	100
TaqI	TCGA	2 cut(s)	927, 1117
TaqII	GACCGA	1 cut(s)	842
TasI	AATT	5 cut(s)	988, 993, 1075, 1093, 1113
TfiI	GAWTC	4 cut(s)	599, 681, 886, 1135
Tru1I	TTAA	5 cut(s)	369, 470, 501, 605, 1079
Tru9I	TTAA	5 cut(s)	369, 470, 501, 605, 1079
TscAI	CASTG	3 cut(s)	184, 324, 799
TseI	GCWGC	1 cut(s)	200
TspDTI	ATGAA	4 cut(s)	405, 444, 591, 876
TspGWI	ACGGA	5 cut(s)	51, 287, 449, 693, 712
TspRI	CASTG	3 cut(s)	184, 324, 799
Tth111I	GACNNNGTC	1 cut(s)	485
Van91I	CCANNNNNTGG	1 cut(s)	631
VpaK11BI	GGWCC	2 cut(s)	143, 238
XapI	RAATTY	2 cut(s)	988, 1093
XcmI	CCANNNNNNNNNTGG	2 cut(s)	581, 992
XmnI	GAANNNNTTC	1 cut(s)	867
XspI	CTAG	2 cut(s)	873, 1130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.