Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003376

Physical Location & Seq

Genomic Coordinates Reverse (-)

10658238 .. 10660350

Gene Structure 2113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG143900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGATGATGATGAGCAATATTTGTGTGGGTTATTATCACGGAGTATTTGATAGTTCTGGAAAAGAGAAAGGGTATATCAAGAGCAAGCTTAGAGAGCAACGTTGGTGTCAAATGGTTTCTGATAAGCATCTCTTTTATGTTTCAGTACCAACACATCTGACTTCTATTGACTGGAAGAACAGTGATCATCAGAGGTCTGTTGCTGCCAGTTTGGTTCAGGGTGTCAAAGTTCTTGAGCTGGACCGCCAAGAGAAGCGTGAAGGACCCGAGGCCTTGGCTCCTCCTTGGTGGGAGTTCTTCCATTTCAAGTTGCTTCGTCCACTGGTGGATGATGCCAGTTGTGGTTCCATTTTCGGTGCCATTTATGAGTTTAAACCTCCTCATGCTCCTCCTTTCTCTTCTCTTGGTACAGAACATTCACTATTGGAAGATGAAAACAGCCCTCATTATGTTATTGCCTTCCGTGGCACCTTAACCGCGTATGACCTGGTCTCGCGAGATCTTAACTTGTCCCTCAAGTTAATCAAAAATGGACTTCACAAGACATCTCGCTTTAAGACTGCTATGCAAGCAATCCAAGCTACGGTTGGGAAAGCAGGTGGCGTTTGGCTAGCTGGCCATTCCATGGGTTCAGTATTGGCAATGCTTGCTGGAAAAACAATGGCCAAGCACGGAATCTTACTCAAATCTTTTCTCTTCAATCAACCATTTGTTTTCGTTGCCCCGATGGAGAGGATCAAGCAGGAGAATATCAAGCTTGGTATTCGCTTTGCTCGGAGTGTGTTCACTGCAGGACTCGCTAAAGCTGTAAATCCCACCTGGTCAGAACACGAAGATCCATTCTTCGGTCTTTATGAATGGGTTCCTAGTGTATTTGTGAACCAAGGTGACGACTTCTGCTCTGGATATATTGGTTATTTCGAACATAGAAAGAAGATGGTAGAGATTGGGGCAGGAGGCATTGAGAGGTTAGCAACCCAGAATTCAATTGGGAGTTTATTGAGGTATGCAATAGGAAAGGAGACAGAGCCACCAATGCACCTCATTCCTTGTGCAAACCTCACAGTCAATTTAACCCCTTCAAGGAATTTCAAAGAAGCCCATGGAATTCGACAATGGTGGCTAGAGAATCAGCACTTGCAGTCTGAGACTTACAGATACAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

388

Amino Acids

43.92

Weight (kDa)

9.01

Isoelectric Point (pI)

35.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05260 AT2G05260 AT4G10955 AT4G10955
fragaria_vesca	FvH4_5g04751 FvH4_5g04751 FvH4_5g04760
malus_domestica	MD06G1108800.v1.1 MD14G1129700.v1.1
prunus_persica	Prupe.5G121400_v2.0.a1 Prupe.5G121400_v2.0.a1 Prupe.5G121600_v2.0.a1
pyrus_communis	pycom06g10220
rosa_chinensis	RchiOBHm_Chr7g0194501 RchiOBHm_Chr7g0194511
rosa_laevigata	RLG00000004195 RLG00000004196 RLG00000023363 RLG00000023364
rosa_multiflora	Rmu_co8167496.1_g000001 Rmu_co8479523.1_g000001 Rmu_sc0041088.1_g000001 Rmu_ssc0000261.1_g000021
rosa_roxburghii	Rroxscaffold_3G00261290 Rroxscaffold_3G00261300
rosa_rugosa	Rorug07G0016000
rosa_samantha	Rh7AG143400 Rh7AG143500 Rh7BG143900 Rh7BG144000 Rh7CG147600 Rh7CG147700 Rh7DG145200 Rh7DG145300
rosa_wichuraiana	Rw7G012280 Rw7G012290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	587
Acc36I	ACCTGC	1 cut(s)	587
AccB1I	GGYRCC	2 cut(s)	356, 467
AccB7I	CCANNNNNTGG	1 cut(s)	625
AccII	CGCG	2 cut(s)	479, 496
AciI	CCGC	2 cut(s)	244, 477
AclI	AACGTT	1 cut(s)	100
AclWI	GGATC	2 cut(s)	743, 830
AcoI	YGGCCR	2 cut(s)	616, 663
AcsI	RAATTY	3 cut(s)	982, 1087, 1107
AfaI	GTAC	2 cut(s)	147, 409
AfiI	CCNNNNNNNGG	4 cut(s)	583, 625, 845, 1083
AgsI	TTSAA	5 cut(s)	307, 700, 987, 1083, 1093
AjnI	CCWGG	2 cut(s)	486, 818
AluBI	AGCT	6 cut(s)	88, 238, 581, 614, 757, 806
AluI	AGCT	6 cut(s)	88, 238, 581, 614, 757, 806
Alw26I	GTCTC	3 cut(s)	496, 1016, 1142
AlwI	GGATC	2 cut(s)	743, 830
Ama87I	CYCGRG	1 cut(s)	266
AoxI	GGCC	3 cut(s)	270, 616, 663
ApeKI	GCWGC	1 cut(s)	203
ApoI	RAATTY	3 cut(s)	982, 1087, 1107
Asp700I	GAANNNNTTC	1 cut(s)	861
AspS9I	GGNCC	2 cut(s)	241, 263
AsuHPI	GGTGA	1 cut(s)	899
AsuII	TTCGAA	1 cut(s)	921
AsuNHI	GCTAGC	1 cut(s)	610
AvaI	CYCGRG	1 cut(s)	266
AvaII	GGWCC	2 cut(s)	241, 263
BalI	TGGCCA	2 cut(s)	618, 665
BanI	GGYRCC	2 cut(s)	356, 467
BbvI	GCAGC	1 cut(s)	190
BccI	CCATC	2 cut(s)	721, 931
BciT130I	CCWGG	2 cut(s)	488, 820
BclI	TGATCA	1 cut(s)	184
BcoDI	GTCTC	3 cut(s)	496, 1016, 1142
BfaI	CTAG	3 cut(s)	611, 867, 1124
BfmI	CTRYAG	1 cut(s)	789
BfuAI	ACCTGC	1 cut(s)	587
BglII	AGATCT	1 cut(s)	499
BisI	GCNGC	1 cut(s)	204
BlsI	GCNGC	1 cut(s)	205
Bme1390I	CCNGG	2 cut(s)	488, 820
Bme18I	GGWCC	2 cut(s)	241, 263
BmeT110I	CYCGRG	1 cut(s)	266
BmgT120I	GGNCC	2 cut(s)	241, 263
BmiI	GGNNCC	6 cut(s)	265, 279, 346, 358, 469, 864
BmrFI	CCNGG	2 cut(s)	488, 820
BmsI	GCATC	2 cut(s)	136, 322
BmtI	GCTAGC	1 cut(s)	614
Bpu14I	TTCGAA	1 cut(s)	921
BpuEI	CTTGAG	2 cut(s)	254, 500
BsaBI	GATNNNNATC	1 cut(s)	126
BsaI	GGTCTC	1 cut(s)	496
BsaJI	CCNNGG	7 cut(s)	267, 273, 284, 463, 624, 883, 1102
Bsc4I	CCNNNNNNNGG	4 cut(s)	583, 625, 845, 1083
Bse1I	ACTGG	4 cut(s)	176, 207, 327, 336
Bse3DI	GCAATG	1 cut(s)	648
Bse8I	GATNNNNATC	1 cut(s)	126
BseBI	CCWGG	2 cut(s)	488, 820
BseDI	CCNNGG	7 cut(s)	267, 273, 284, 463, 624, 883, 1102
BseGI	GGATG	1 cut(s)	334
BseJI	GATNNNNATC	1 cut(s)	126
BseLI	CCNNNNNNNGG	4 cut(s)	583, 625, 845, 1083
BseMI	GCAATG	1 cut(s)	648
BseMII	CTCAG	1 cut(s)	1137
BseNI	ACTGG	4 cut(s)	176, 207, 327, 336
BseRI	GAGGAG	3 cut(s)	270, 369, 378
BseXI	GCAGC	1 cut(s)	190
Bsh1236I	CGCG	2 cut(s)	479, 496
BshFI	GGCC	3 cut(s)	272, 618, 665
BshNI	GGYRCC	2 cut(s)	356, 467
BsiHKCI	CYCGRG	1 cut(s)	266
BslFI	GGGAC	1 cut(s)	496
BslI	CCNNNNNNNGG	4 cut(s)	583, 625, 845, 1083
BsmAI	GTCTC	3 cut(s)	496, 1016, 1142
BsmFI	GGGAC	1 cut(s)	496
BsnI	GGCC	3 cut(s)	272, 618, 665
Bso31I	GGTCTC	1 cut(s)	496
BsoBI	CYCGRG	1 cut(s)	266
Bsp119I	TTCGAA	1 cut(s)	921
Bsp143I	GATC	4 cut(s)	184, 499, 735, 835
Bsp19I	CCATGG	2 cut(s)	624, 1102
Bsp68I	TCGCGA	1 cut(s)	496
BspACI	CCGC	2 cut(s)	244, 477
BspANI	GGCC	3 cut(s)	272, 618, 665
BspCNI	CTCAG	1 cut(s)	1138
BspFNI	CGCG	2 cut(s)	479, 496
BspLI	GGNNCC	6 cut(s)	265, 279, 346, 358, 469, 864
BspMAI	CTGCAG	1 cut(s)	793
BspMI	ACCTGC	1 cut(s)	587
BspOI	GCTAGC	1 cut(s)	614
BspPI	GGATC	2 cut(s)	743, 830
BspT104I	TTCGAA	1 cut(s)	921
BspT107I	GGYRCC	2 cut(s)	356, 467
BspTNI	GGTCTC	1 cut(s)	496
BsrDI	GCAATG	1 cut(s)	648
BsrI	ACTGG	4 cut(s)	176, 207, 327, 336
BssECI	CCNNGG	7 cut(s)	267, 273, 284, 463, 624, 883, 1102
BssMI	GATC	4 cut(s)	184, 499, 735, 835
BssT1I	CCWWGG	5 cut(s)	273, 284, 624, 883, 1102
Bst2UI	CCWGG	2 cut(s)	488, 820
Bst4CI	ACNGT	3 cut(s)	182, 586, 1066
Bst6I	CTCTTC	2 cut(s)	403, 701
BstAPI	GCANNNNNTGC	1 cut(s)	647
BstBI	TTCGAA	1 cut(s)	921
BstC8I	GCNNGC	5 cut(s)	86, 570, 612, 616, 648
BstDEI	CTNAG	2 cut(s)	89, 1146
BstDSI	CCRYGG	3 cut(s)	463, 624, 1102
BstF5I	GGATG	1 cut(s)	334
BstFNI	CGCG	2 cut(s)	479, 496
BstKTI	GATC	4 cut(s)	187, 502, 738, 838
BstMAI	GTCTC	3 cut(s)	496, 1016, 1142
BstMBI	GATC	4 cut(s)	184, 499, 735, 835
BstMWI	GCNNNNNNNGC	6 cut(s)	94, 569, 578, 647, 797, 1036
BstNI	CCWGG	2 cut(s)	488, 820
BstSCI	CCNGG	2 cut(s)	486, 818
BstSFI	CTRYAG	1 cut(s)	789
BstUI	CGCG	2 cut(s)	479, 496
BstV1I	GCAGC	1 cut(s)	190
BstX2I	RGATCY	2 cut(s)	499, 835
BstYI	RGATCY	2 cut(s)	499, 835
BsuRI	GGCC	3 cut(s)	272, 618, 665
BtgI	CCRYGG	3 cut(s)	463, 624, 1102
BtsCI	GGATG	1 cut(s)	334
BtsI	GCAGTG	1 cut(s)	786
BtsIMutI	CAGTG	3 cut(s)	187, 320, 786
BtuMI	TCGCGA	1 cut(s)	496
BveI	ACCTGC	1 cut(s)	587
Cac8I	GCNNGC	5 cut(s)	86, 570, 612, 616, 648
Cfr13I	GGNCC	2 cut(s)	241, 263
CsiI	ACCWGGT	2 cut(s)	486, 818
Csp6I	GTAC	2 cut(s)	146, 408
CviAII	CATG	3 cut(s)	383, 625, 1103
CviQI	GTAC	2 cut(s)	146, 408
DdeI	CTNAG	2 cut(s)	89, 1146
DpnI	GATC	4 cut(s)	186, 501, 737, 837
DpnII	GATC	4 cut(s)	184, 499, 735, 835
DraI	TTTAAA	1 cut(s)	373
EaeI	YGGCCR	2 cut(s)	616, 663
Eam1104I	CTCTTC	2 cut(s)	403, 701
EarI	CTCTTC	2 cut(s)	403, 701
Eco130I	CCWWGG	5 cut(s)	273, 284, 624, 883, 1102
Eco147I	AGGCCT	1 cut(s)	272
Eco31I	GGTCTC	1 cut(s)	496
Eco47I	GGWCC	2 cut(s)	241, 263
Eco88I	CYCGRG	1 cut(s)	266
EcoO109I	RGGNCCY	1 cut(s)	263
EcoRI	GAATTC	2 cut(s)	982, 1107
EcoRII	CCWGG	2 cut(s)	486, 818
EcoT14I	CCWWGG	5 cut(s)	273, 284, 624, 883, 1102
ErhI	CCWWGG	5 cut(s)	273, 284, 624, 883, 1102
FaeI	CATG	3 cut(s)	386, 628, 1106
FalI	AAGNNNNNCTT	2 cut(s)	116, 148
FaqI	GGGAC	1 cut(s)	496
FatI	CATG	3 cut(s)	382, 624, 1102
FbaI	TGATCA	1 cut(s)	184
Fnu4HI	GCNGC	1 cut(s)	204
FokI	GGATG	1 cut(s)	341
Fsp4HI	GCNGC	1 cut(s)	204
FspBI	CTAG	3 cut(s)	611, 867, 1124
GluI	GCNGC	1 cut(s)	204
HaeIII	GGCC	3 cut(s)	272, 618, 665
Hin1II	CATG	3 cut(s)	386, 628, 1106
HindIII	AAGCTT	2 cut(s)	86, 755
HinfI	GANTC	3 cut(s)	675, 795, 1129
HphI	GGTGA	1 cut(s)	899
Hpy166II	GTNNAC	3 cut(s)	320, 786, 880
Hpy188I	TCNGA	6 cut(s)	121, 159, 192, 777, 826, 1147
Hpy188III	TCNNGA	5 cut(s)	57, 79, 233, 495, 903
Hpy8I	GTNNAC	3 cut(s)	320, 786, 880
HpyAV	CCTTC	3 cut(s)	254, 469, 1089
HpyCH4III	ACNGT	3 cut(s)	182, 586, 1066
HpyCH4IV	ACGT	1 cut(s)	100
HpyCH4V	TGCA	6 cut(s)	568, 791, 1010, 1039, 1055, 1141
HpyF10VI	GCNNNNNNNGC	6 cut(s)	94, 569, 578, 647, 797, 1036
HpyF3I	CTNAG	2 cut(s)	89, 1146
HpySE526I	ACGT	1 cut(s)	100
Hsp92II	CATG	3 cut(s)	386, 628, 1106
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	4 cut(s)	184, 499, 735, 835
LmnI	GCTCC	2 cut(s)	283, 391
Lsp1109I	GCAGC	1 cut(s)	190
LweI	GCATC	2 cut(s)	136, 322
MabI	ACCWGGT	2 cut(s)	486, 818
MaeI	CTAG	3 cut(s)	611, 867, 1124
MaeII	ACGT	1 cut(s)	100
MaeIII	GTNAC	1 cut(s)	887
MalI	GATC	4 cut(s)	186, 501, 737, 837
MboI	GATC	4 cut(s)	184, 499, 735, 835
MboII	GAAGA	8 cut(s)	187, 289, 390, 440, 688, 835, 845, 946
MfeI	CAATTG	1 cut(s)	987
MflI	RGATCY	2 cut(s)	499, 835
MlsI	TGGCCA	2 cut(s)	618, 665
MluCI	AATT	5 cut(s)	982, 987, 1069, 1087, 1107
MluNI	TGGCCA	2 cut(s)	618, 665
MlyI	GAGTC	1 cut(s)	789
Mox20I	TGGCCA	2 cut(s)	618, 665
MroXI	GAANNNNTTC	1 cut(s)	861
MscI	TGGCCA	2 cut(s)	618, 665
MseI	TTAA	6 cut(s)	372, 473, 504, 521, 555, 1073
Msp20I	TGGCCA	2 cut(s)	618, 665
MspR9I	CCNGG	2 cut(s)	488, 820
MssI	GTTTAAAC	1 cut(s)	373
MunI	CAATTG	1 cut(s)	987
MvaI	CCWGG	2 cut(s)	488, 820
MvnI	CGCG	2 cut(s)	479, 496
MwoI	GCNNNNNNNGC	6 cut(s)	94, 569, 578, 647, 797, 1036
NcoI	CCATGG	2 cut(s)	624, 1102
NdeII	GATC	4 cut(s)	184, 499, 735, 835
NheI	GCTAGC	1 cut(s)	610
NlaIII	CATG	3 cut(s)	386, 628, 1106
NlaIV	GGNNCC	6 cut(s)	265, 279, 346, 358, 469, 864
NmuCI	GTSAC	1 cut(s)	887
NruI	TCGCGA	1 cut(s)	496
NspV	TTCGAA	1 cut(s)	921
PaqCI	CACCTGC	1 cut(s)	587
PceI	AGGCCT	1 cut(s)	272
PdmI	GAANNNNTTC	1 cut(s)	861
PfeI	GAWTC	2 cut(s)	675, 1129
PflFI	GACNNNGTC	1 cut(s)	488
PflMI	CCANNNNNTGG	1 cut(s)	625
PkrI	GCNGC	1 cut(s)	205
PleI	GAGTC	1 cut(s)	789
PmeI	GTTTAAAC	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	789
PpuMI	RGGWCCY	1 cut(s)	263
Psp1406I	AACGTT	1 cut(s)	100
Psp5II	RGGWCCY	1 cut(s)	263
Psp6I	CCWGG	2 cut(s)	486, 818
PspGI	CCWGG	2 cut(s)	486, 818
PspN4I	GGNNCC	6 cut(s)	265, 279, 346, 358, 469, 864
PspPI	GGNCC	2 cut(s)	241, 263
PspPPI	RGGWCCY	1 cut(s)	263
PstI	CTGCAG	1 cut(s)	793
PsuI	RGATCY	2 cut(s)	499, 835
PsyI	GACNNNGTC	1 cut(s)	488
RruI	TCGCGA	1 cut(s)	496
RsaI	GTAC	2 cut(s)	147, 409
RsaNI	GTAC	2 cut(s)	146, 408
SaqAI	TTAA	6 cut(s)	372, 473, 504, 521, 555, 1073
SatI	GCNGC	1 cut(s)	204
Sau3AI	GATC	4 cut(s)	184, 499, 735, 835
Sau96I	GGNCC	2 cut(s)	241, 263
SchI	GAGTC	1 cut(s)	789
ScrFI	CCNGG	2 cut(s)	488, 820
SexAI	ACCWGGT	2 cut(s)	486, 818
SfaNI	GCATC	2 cut(s)	136, 322
SfcI	CTRYAG	1 cut(s)	789
SfuI	TTCGAA	1 cut(s)	921
SinI	GGWCC	2 cut(s)	241, 263
SmlI	CTYRAG	2 cut(s)	233, 515
SmoI	CTYRAG	2 cut(s)	233, 515
Sse9I	AATT	5 cut(s)	982, 987, 1069, 1087, 1107
SseBI	AGGCCT	1 cut(s)	272
SsiI	CCGC	2 cut(s)	244, 477
SspI	AATATT	1 cut(s)	19
SspMI	CTAG	3 cut(s)	611, 867, 1124
StuI	AGGCCT	1 cut(s)	272
StyD4I	CCNGG	2 cut(s)	486, 818
StyI	CCWWGG	5 cut(s)	273, 284, 624, 883, 1102
TaaI	ACNGT	3 cut(s)	182, 586, 1066
TaiI	ACGT	1 cut(s)	103
TaqI	TCGA	2 cut(s)	921, 1111
TaqII	GACCGA	1 cut(s)	836
TasI	AATT	5 cut(s)	982, 987, 1069, 1087, 1107
TfiI	GAWTC	2 cut(s)	675, 1129
Tru1I	TTAA	6 cut(s)	372, 473, 504, 521, 555, 1073
Tru9I	TTAA	6 cut(s)	372, 473, 504, 521, 555, 1073
TscAI	CASTG	3 cut(s)	187, 327, 793
TseFI	GTSAC	1 cut(s)	887
TseI	GCWGC	1 cut(s)	203
Tsp45I	GTSAC	1 cut(s)	887
TspDTI	ATGAA	2 cut(s)	447, 870
TspGWI	ACGGA	3 cut(s)	54, 452, 687
TspRI	CASTG	3 cut(s)	187, 327, 793
Tth111I	GACNNNGTC	1 cut(s)	488
Van91I	CCANNNNNTGG	1 cut(s)	625
VpaK11BI	GGWCC	2 cut(s)	241, 263
XapI	RAATTY	3 cut(s)	982, 1087, 1107
XcmI	CCANNNNNNNNNTGG	2 cut(s)	584, 986
XmnI	GAANNNNTTC	1 cut(s)	861
XspI	CTAG	3 cut(s)	611, 867, 1124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.