Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0003376

Physical Location & Seq

Genomic Coordinates Reverse (-)

11612088 .. 11614524

Gene Structure 2437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G012280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGTTTCTGATAAGCATCTCTTTTATGTTTCAGGACCAACACATCTGACTTCTATTGACTGGAAGAACAGTGATCATCAGAGGTCTGTTGCTGCCAGTTTGGTTAAGGGTGTCAAAGTTCTTGAGCTGGACCGCCAAGAGAAGCGTGAAGGACCCGAGGCCTTGGCTCCTCCTTGGTGGGAGTTCTTCCATTTCAAGTTGCTTCGTCCACTGGTGGATGATGCCAGTTGTGGTTCCATTTTCGGTGCCATTTATGAGTTTAAACCTCCTCATGCTCCTCCTCTCTCTTCTCTTGGTACAGAACATTCACTATTGGAAGATGAAAACAGCCCTCATTATGTTATTGCCTTCCGTGGCACCTTAACCGCGTATGACCTGGTCTCGCGAGATCTTAACTTGTCCCTCAAGTTAATCAAAAATGGACTTCACAAGACATCTCGCTTTAAGACTGCTATGCAAGCAATCCAAGCTACGGTTGGGGAAGCAGGTGATTCATCAAGCGTTTGGCTAGCTGGCCATTCCATGGGTTCAGTATTGGCAATGCTTGCTGGAAAAACAATGGCCAAGGACGGAATCTTACTCAAATCTTTTCTCTTCAATCAACCATTTGTTTTCGTTGCCCCGATGGAGAGGATCAAACACGAGAATATCAAGCTTGGTATTCGCTTTGCCCGGAGTGTGTTCACTGCGGGACTGGCTAAAGCTGTAAATCCCACCTGGTCAGAACACGAAGATCCATTCTTCGGTCTTTATGAATGGGTTCCTAGTGTATTTGTGAATCAAGGTGACGACTTCTGCTCTGGATATATTGGTTATTTCGAACATAGAAAGAAGATGGTAGAGATTGGAGCAGGAGGCATTGAGAGGTTAGCAACCCAGAATTCAATTGGGAGTTTATTGAGGTATGCAATAGGAAAGGAGACAGAGCCACCAATGCACCTCATTCCTTGTGCAAACCTCACAGTCAATTTAACCCCTTCAAGGAATTTCAAAGAAGCCCATGGAATTCGACAATGGTGGCTAGAGAATCAGCACTTGCAGTCTGAGACTTACAGATACAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

354

Amino Acids

39.77

Weight (kDa)

7.8

Isoelectric Point (pI)

31.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05260 AT2G05260 AT4G10955 AT4G10955
fragaria_vesca	FvH4_5g04751 FvH4_5g04751 FvH4_5g04760
malus_domestica	MD06G1108800.v1.1 MD14G1129700.v1.1
prunus_persica	Prupe.5G121400_v2.0.a1 Prupe.5G121400_v2.0.a1 Prupe.5G121600_v2.0.a1
pyrus_communis	pycom06g10220
rosa_chinensis	RchiOBHm_Chr7g0194501 RchiOBHm_Chr7g0194511
rosa_laevigata	RLG00000004195 RLG00000004196 RLG00000023363 RLG00000023364
rosa_multiflora	Rmu_co8167496.1_g000001 Rmu_co8479523.1_g000001 Rmu_sc0041088.1_g000001 Rmu_ssc0000261.1_g000021
rosa_roxburghii	Rroxscaffold_3G00261290 Rroxscaffold_3G00261300
rosa_rugosa	Rorug07G0016000
rosa_samantha	Rh7AG143400 Rh7AG143500 Rh7BG143900 Rh7BG144000 Rh7CG147600 Rh7CG147700 Rh7DG145200 Rh7DG145300
rosa_wichuraiana	Rw7G012280 Rw7G012290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	476
Acc36I	ACCTGC	1 cut(s)	476
AccB1I	GGYRCC	2 cut(s)	245, 356
AccB7I	CCANNNNNTGG	1 cut(s)	523
AccII	CGCG	2 cut(s)	368, 385
AciI	CCGC	3 cut(s)	133, 366, 689
AclWI	GGATC	2 cut(s)	641, 728
AcoI	YGGCCR	2 cut(s)	514, 561
AcsI	RAATTY	3 cut(s)	880, 985, 1005
AfaI	GTAC	1 cut(s)	298
AfiI	CCNNNNNNNGG	4 cut(s)	472, 523, 743, 981
AgsI	TTSAA	5 cut(s)	196, 598, 885, 981, 991
AjnI	CCWGG	2 cut(s)	375, 716
AluBI	AGCT	5 cut(s)	127, 470, 512, 655, 704
AluI	AGCT	5 cut(s)	127, 470, 512, 655, 704
Alw26I	GTCTC	3 cut(s)	385, 914, 1040
AlwI	GGATC	2 cut(s)	641, 728
Ama87I	CYCGRG	1 cut(s)	155
AoxI	GGCC	3 cut(s)	159, 514, 561
ApeKI	GCWGC	1 cut(s)	92
ApoI	RAATTY	3 cut(s)	880, 985, 1005
Asp700I	GAANNNNTTC	1 cut(s)	759
AspS9I	GGNCC	3 cut(s)	35, 130, 152
AsuC2I	CCSGG	1 cut(s)	673
AsuHPI	GGTGA	2 cut(s)	500, 797
AsuII	TTCGAA	1 cut(s)	819
AsuNHI	GCTAGC	1 cut(s)	508
AvaI	CYCGRG	1 cut(s)	155
AvaII	GGWCC	3 cut(s)	35, 130, 152
BalI	TGGCCA	2 cut(s)	516, 563
BanI	GGYRCC	2 cut(s)	245, 356
BauI	CACGAG	1 cut(s)	641
BbvI	GCAGC	1 cut(s)	79
BccI	CCATC	2 cut(s)	619, 829
BciT130I	CCWGG	2 cut(s)	377, 718
BclI	TGATCA	1 cut(s)	73
BcnI	CCSGG	1 cut(s)	673
BcoDI	GTCTC	3 cut(s)	385, 914, 1040
BfaI	CTAG	3 cut(s)	509, 765, 1022
BfuAI	ACCTGC	1 cut(s)	476
BglII	AGATCT	1 cut(s)	388
BisI	GCNGC	1 cut(s)	93
BlsI	GCNGC	1 cut(s)	94
Bme1390I	CCNGG	3 cut(s)	377, 673, 718
Bme18I	GGWCC	3 cut(s)	35, 130, 152
BmeT110I	CYCGRG	1 cut(s)	155
BmgT120I	GGNCC	3 cut(s)	35, 130, 152
BmiI	GGNNCC	6 cut(s)	154, 168, 235, 247, 358, 762
BmrFI	CCNGG	3 cut(s)	377, 673, 718
BmsI	GCATC	2 cut(s)	25, 211
BmtI	GCTAGC	1 cut(s)	512
Bpu14I	TTCGAA	1 cut(s)	819
BpuEI	CTTGAG	2 cut(s)	143, 389
BpuMI	CCSGG	1 cut(s)	673
BsaBI	GATNNNNATC	1 cut(s)	15
BsaI	GGTCTC	1 cut(s)	385
BsaJI	CCNNGG	7 cut(s)	156, 162, 173, 352, 522, 564, 1000
Bsc4I	CCNNNNNNNGG	4 cut(s)	472, 523, 743, 981
Bse1I	ACTGG	5 cut(s)	65, 96, 216, 225, 699
Bse3DI	GCAATG	1 cut(s)	546
Bse8I	GATNNNNATC	1 cut(s)	15
BseBI	CCWGG	2 cut(s)	377, 718
BseDI	CCNNGG	7 cut(s)	156, 162, 173, 352, 522, 564, 1000
BseGI	GGATG	1 cut(s)	223
BseJI	GATNNNNATC	1 cut(s)	15
BseLI	CCNNNNNNNGG	4 cut(s)	472, 523, 743, 981
BseMI	GCAATG	1 cut(s)	546
BseMII	CTCAG	1 cut(s)	1035
BseNI	ACTGG	5 cut(s)	65, 96, 216, 225, 699
BseRI	GAGGAG	4 cut(s)	159, 258, 267, 270
BseXI	GCAGC	1 cut(s)	79
Bsh1236I	CGCG	2 cut(s)	368, 385
BshFI	GGCC	3 cut(s)	161, 516, 563
BshNI	GGYRCC	2 cut(s)	245, 356
BsiHKCI	CYCGRG	1 cut(s)	155
BsiSI	CCGG	1 cut(s)	673
BslFI	GGGAC	2 cut(s)	385, 705
BslI	CCNNNNNNNGG	4 cut(s)	472, 523, 743, 981
BsmAI	GTCTC	3 cut(s)	385, 914, 1040
BsmFI	GGGAC	2 cut(s)	385, 705
BsnI	GGCC	3 cut(s)	161, 516, 563
Bso31I	GGTCTC	1 cut(s)	385
BsoBI	CYCGRG	1 cut(s)	155
Bsp119I	TTCGAA	1 cut(s)	819
Bsp143I	GATC	4 cut(s)	73, 388, 633, 733
Bsp19I	CCATGG	2 cut(s)	522, 1000
Bsp68I	TCGCGA	1 cut(s)	385
BspACI	CCGC	3 cut(s)	133, 366, 689
BspANI	GGCC	3 cut(s)	161, 516, 563
BspCNI	CTCAG	1 cut(s)	1036
BspFNI	CGCG	2 cut(s)	368, 385
BspLI	GGNNCC	6 cut(s)	154, 168, 235, 247, 358, 762
BspMI	ACCTGC	1 cut(s)	476
BspOI	GCTAGC	1 cut(s)	512
BspPI	GGATC	2 cut(s)	641, 728
BspT104I	TTCGAA	1 cut(s)	819
BspT107I	GGYRCC	2 cut(s)	245, 356
BspTNI	GGTCTC	1 cut(s)	385
BsrDI	GCAATG	1 cut(s)	546
BsrI	ACTGG	5 cut(s)	65, 96, 216, 225, 699
BssECI	CCNNGG	7 cut(s)	156, 162, 173, 352, 522, 564, 1000
BssMI	GATC	4 cut(s)	73, 388, 633, 733
BssSI	CACGAG	1 cut(s)	641
BssT1I	CCWWGG	5 cut(s)	162, 173, 522, 564, 1000
Bst2BI	CACGAG	1 cut(s)	641
Bst2UI	CCWGG	2 cut(s)	377, 718
Bst4CI	ACNGT	3 cut(s)	71, 475, 964
Bst6I	CTCTTC	2 cut(s)	292, 599
BstAPI	GCANNNNNTGC	1 cut(s)	545
BstBI	TTCGAA	1 cut(s)	819
BstC8I	GCNNGC	4 cut(s)	459, 510, 514, 546
BstDEI	CTNAG	1 cut(s)	1044
BstDSI	CCRYGG	3 cut(s)	352, 522, 1000
BstF5I	GGATG	1 cut(s)	223
BstFNI	CGCG	2 cut(s)	368, 385
BstKTI	GATC	4 cut(s)	76, 391, 636, 736
BstMAI	GTCTC	3 cut(s)	385, 914, 1040
BstMBI	GATC	4 cut(s)	73, 388, 633, 733
BstMWI	GCNNNNNNNGC	5 cut(s)	458, 467, 545, 695, 934
BstNI	CCWGG	2 cut(s)	377, 718
BstSCI	CCNGG	3 cut(s)	375, 671, 716
BstUI	CGCG	2 cut(s)	368, 385
BstV1I	GCAGC	1 cut(s)	79
BstX2I	RGATCY	2 cut(s)	388, 733
BstYI	RGATCY	2 cut(s)	388, 733
BsuRI	GGCC	3 cut(s)	161, 516, 563
BtgI	CCRYGG	3 cut(s)	352, 522, 1000
BtsCI	GGATG	1 cut(s)	223
BtsI	GCAGTG	1 cut(s)	684
BtsIMutI	CAGTG	3 cut(s)	76, 209, 684
BtuMI	TCGCGA	1 cut(s)	385
BveI	ACCTGC	1 cut(s)	476
Cac8I	GCNNGC	4 cut(s)	459, 510, 514, 546
Cfr13I	GGNCC	3 cut(s)	35, 130, 152
CsiI	ACCWGGT	2 cut(s)	375, 716
Csp6I	GTAC	1 cut(s)	297
CviAII	CATG	3 cut(s)	272, 523, 1001
CviQI	GTAC	1 cut(s)	297
DdeI	CTNAG	1 cut(s)	1044
DpnI	GATC	4 cut(s)	75, 390, 635, 735
DpnII	GATC	4 cut(s)	73, 388, 633, 733
DraI	TTTAAA	1 cut(s)	262
EaeI	YGGCCR	2 cut(s)	514, 561
Eam1104I	CTCTTC	2 cut(s)	292, 599
EarI	CTCTTC	2 cut(s)	292, 599
Eco130I	CCWWGG	5 cut(s)	162, 173, 522, 564, 1000
Eco147I	AGGCCT	1 cut(s)	161
Eco31I	GGTCTC	1 cut(s)	385
Eco47I	GGWCC	3 cut(s)	35, 130, 152
Eco88I	CYCGRG	1 cut(s)	155
EcoO109I	RGGNCCY	1 cut(s)	152
EcoRI	GAATTC	2 cut(s)	880, 1005
EcoRII	CCWGG	2 cut(s)	375, 716
EcoT14I	CCWWGG	5 cut(s)	162, 173, 522, 564, 1000
ErhI	CCWWGG	5 cut(s)	162, 173, 522, 564, 1000
FaeI	CATG	3 cut(s)	275, 526, 1004
FalI	AAGNNNNNCTT	1 cut(s)	37
FaqI	GGGAC	2 cut(s)	385, 705
FatI	CATG	3 cut(s)	271, 522, 1000
FauI	CCCGC	1 cut(s)	682
FbaI	TGATCA	1 cut(s)	73
Fnu4HI	GCNGC	1 cut(s)	93
FokI	GGATG	1 cut(s)	230
Fsp4HI	GCNGC	1 cut(s)	93
FspBI	CTAG	3 cut(s)	509, 765, 1022
GluI	GCNGC	1 cut(s)	93
HaeIII	GGCC	3 cut(s)	161, 516, 563
HapII	CCGG	1 cut(s)	673
Hin1II	CATG	3 cut(s)	275, 526, 1004
HindIII	AAGCTT	1 cut(s)	653
HinfI	GANTC	4 cut(s)	491, 573, 778, 1027
HpaII	CCGG	1 cut(s)	673
HphI	GGTGA	2 cut(s)	500, 797
Hpy166II	GTNNAC	2 cut(s)	209, 684
Hpy188I	TCNGA	5 cut(s)	10, 48, 81, 724, 1045
Hpy188III	TCNNGA	4 cut(s)	33, 122, 384, 801
Hpy8I	GTNNAC	2 cut(s)	209, 684
HpyAV	CCTTC	3 cut(s)	143, 358, 987
HpyCH4III	ACNGT	3 cut(s)	71, 475, 964
HpyCH4V	TGCA	5 cut(s)	457, 908, 937, 953, 1039
HpyF10VI	GCNNNNNNNGC	5 cut(s)	458, 467, 545, 695, 934
HpyF3I	CTNAG	1 cut(s)	1044
Hsp92II	CATG	3 cut(s)	275, 526, 1004
Ksp22I	TGATCA	1 cut(s)	73
Kzo9I	GATC	4 cut(s)	73, 388, 633, 733
LmnI	GCTCC	3 cut(s)	172, 280, 848
Lsp1109I	GCAGC	1 cut(s)	79
LweI	GCATC	2 cut(s)	25, 211
MabI	ACCWGGT	2 cut(s)	375, 716
MaeI	CTAG	3 cut(s)	509, 765, 1022
MaeIII	GTNAC	1 cut(s)	785
MalI	GATC	4 cut(s)	75, 390, 635, 735
MboI	GATC	4 cut(s)	73, 388, 633, 733
MboII	GAAGA	8 cut(s)	76, 178, 279, 329, 586, 733, 743, 844
MfeI	CAATTG	1 cut(s)	885
MflI	RGATCY	2 cut(s)	388, 733
MlsI	TGGCCA	2 cut(s)	516, 563
MluCI	AATT	5 cut(s)	880, 885, 967, 985, 1005
MluNI	TGGCCA	2 cut(s)	516, 563
Mox20I	TGGCCA	2 cut(s)	516, 563
MroXI	GAANNNNTTC	1 cut(s)	759
MscI	TGGCCA	2 cut(s)	516, 563
MseI	TTAA	7 cut(s)	105, 261, 362, 393, 410, 444, 971
Msp20I	TGGCCA	2 cut(s)	516, 563
MspI	CCGG	1 cut(s)	673
MspR9I	CCNGG	3 cut(s)	377, 673, 718
MssI	GTTTAAAC	1 cut(s)	262
MunI	CAATTG	1 cut(s)	885
MvaI	CCWGG	2 cut(s)	377, 718
MvnI	CGCG	2 cut(s)	368, 385
MwoI	GCNNNNNNNGC	5 cut(s)	458, 467, 545, 695, 934
NciI	CCSGG	1 cut(s)	673
NcoI	CCATGG	2 cut(s)	522, 1000
NdeII	GATC	4 cut(s)	73, 388, 633, 733
NheI	GCTAGC	1 cut(s)	508
NlaIII	CATG	3 cut(s)	275, 526, 1004
NlaIV	GGNNCC	6 cut(s)	154, 168, 235, 247, 358, 762
NmuCI	GTSAC	1 cut(s)	785
NruI	TCGCGA	1 cut(s)	385
NspV	TTCGAA	1 cut(s)	819
PaqCI	CACCTGC	1 cut(s)	476
PceI	AGGCCT	1 cut(s)	161
PdmI	GAANNNNTTC	1 cut(s)	759
PfeI	GAWTC	4 cut(s)	491, 573, 778, 1027
PflFI	GACNNNGTC	1 cut(s)	377
PflMI	CCANNNNNTGG	1 cut(s)	523
PkrI	GCNGC	1 cut(s)	94
PmeI	GTTTAAAC	1 cut(s)	262
PpuMI	RGGWCCY	1 cut(s)	152
Psp5II	RGGWCCY	1 cut(s)	152
Psp6I	CCWGG	2 cut(s)	375, 716
PspGI	CCWGG	2 cut(s)	375, 716
PspN4I	GGNNCC	6 cut(s)	154, 168, 235, 247, 358, 762
PspPI	GGNCC	3 cut(s)	35, 130, 152
PspPPI	RGGWCCY	1 cut(s)	152
PsuI	RGATCY	2 cut(s)	388, 733
PsyI	GACNNNGTC	1 cut(s)	377
RruI	TCGCGA	1 cut(s)	385
RsaI	GTAC	1 cut(s)	298
RsaNI	GTAC	1 cut(s)	297
SaqAI	TTAA	7 cut(s)	105, 261, 362, 393, 410, 444, 971
SatI	GCNGC	1 cut(s)	93
Sau3AI	GATC	4 cut(s)	73, 388, 633, 733
Sau96I	GGNCC	3 cut(s)	35, 130, 152
ScrFI	CCNGG	3 cut(s)	377, 673, 718
SexAI	ACCWGGT	2 cut(s)	375, 716
SfaNI	GCATC	2 cut(s)	25, 211
SfuI	TTCGAA	1 cut(s)	819
SinI	GGWCC	3 cut(s)	35, 130, 152
SmlI	CTYRAG	2 cut(s)	122, 404
SmoI	CTYRAG	2 cut(s)	122, 404
Sse9I	AATT	5 cut(s)	880, 885, 967, 985, 1005
SseBI	AGGCCT	1 cut(s)	161
SsiI	CCGC	3 cut(s)	133, 366, 689
SspMI	CTAG	3 cut(s)	509, 765, 1022
StuI	AGGCCT	1 cut(s)	161
StyD4I	CCNGG	3 cut(s)	375, 671, 716
StyI	CCWWGG	5 cut(s)	162, 173, 522, 564, 1000
TaaI	ACNGT	3 cut(s)	71, 475, 964
TaqI	TCGA	2 cut(s)	819, 1009
TaqII	GACCGA	1 cut(s)	734
TasI	AATT	5 cut(s)	880, 885, 967, 985, 1005
TfiI	GAWTC	4 cut(s)	491, 573, 778, 1027
Tru1I	TTAA	7 cut(s)	105, 261, 362, 393, 410, 444, 971
Tru9I	TTAA	7 cut(s)	105, 261, 362, 393, 410, 444, 971
TscAI	CASTG	3 cut(s)	76, 216, 691
TseFI	GTSAC	1 cut(s)	785
TseI	GCWGC	1 cut(s)	92
Tsp45I	GTSAC	1 cut(s)	785
TspDTI	ATGAA	3 cut(s)	336, 483, 768
TspGWI	ACGGA	2 cut(s)	341, 585
TspRI	CASTG	3 cut(s)	76, 216, 691
Tth111I	GACNNNGTC	1 cut(s)	377
Van91I	CCANNNNNTGG	1 cut(s)	523
VpaK11BI	GGWCC	3 cut(s)	35, 130, 152
XapI	RAATTY	3 cut(s)	880, 985, 1005
XcmI	CCANNNNNNNNNTGG	2 cut(s)	473, 884
XmnI	GAANNNNTTC	1 cut(s)	759
XspI	CTAG	3 cut(s)	509, 765, 1022

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.