AT2G16970

Hippocampus abundant transcript-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0001419
Physical Location & Seq
Forward (+)
7369452 .. 7375688
6237 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G16970.7

Sequence Viewer

Length: 1155 bp
ATGGAGGAATATAGACTTGGAGAGCTGAGACACTTGCTGACAACGGTTTTCCTGTCGGGATTCTCCGAGTTCTTGGTGAAGCCAGTGATGACTGACGTCACCGTCGCCGCGGTTTGCTCCGGCCTAAACGAAACATGTTCTCTCGCCGTCTATCTCACCGGAGTAGAACAAGTGACGGTAGGACTGGGGACAATGGTAATGATGCCGGTGATCGGGAATCTATCCGATAGATATGGAATCAAAACATTACTCACTCTTCCGATGTGCCTCTCTATTCTTCCTCCAGCGATATTAGCGTATAGAAGGGATACGAATTTCTTCTACGCGTTTTACATAACCAAGATTCTATTCGATATGGTCTGCCAAGGCACCGTTGACTGTCTCGCTCATGCTTATGTGGCGAAAAATGTTTGTGGCAGAAAAAGAATATCAATGTTTGGAGTTTTAGCAGGTGTCAGATCAATTTCAGGAGTTTGTGCAACATTCTCAGCTCGTTTGTTACCCATAGCTTCAATTTTTCAGGTTGCAGCTATATCATTTTTCTTTGGCCTCGTGTACATGAGAGTTTTCCTAAAAGAGAGGTTACATGATGATGATGAAGACGACTGTGATGAAGATGATAATACTAGTGGTAGAAATCATCATGATGGTGGTGATCTAACGATGTTAGCAGAGCCTATTTTAAGAGATGCACCAACTAAGATACATATTGTCTTGAACACTAAGTATTCGTCTTTGAAAGATATGGTCAGCTTGATAAAGAATAGCACCATACTCGTCCAAACATTGGTTGTTACTTTCTTTGCTACCTTCGCACAAAGTGGAATGCAATCTGCTTTCTTGTATTTTCTAAAAGCTCGTTTTGGGTTCAACAAAAATGACTTTGCTGAGCTCATACTGTTGGTTACCATCATTGGCTCCATCTCTCAGCTCTTTATATTGCCGAAATTGGTTTCTGCCATAGGAGAACGTAGGGTTTTATCAACAGGGCTTCTTATGGATTCTGTAAACGCAGCTTGTCTCAGTGTTTCGTGGTCAGCATGGGTTCCTTATGCCACGACAGTGCTTGTACCCGTAACAATGTTTGTGGTATTGCTTCAAGACAAGTGGGACCCGGTGAACAGGGGAAGGTCCAAGGATGCATATCCGGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1

Protein Analysis

384

Amino Acids

42.44

Weight (kDa)

6.59

Isoelectric Point (pI)

37.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 13 - 399 1.2e-20 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 440
AasI GACNNNNNNGTC 1 cut(s) 101
AatII GACGTC 1 cut(s) 99
Acc36I ACCTGC 1 cut(s) 440
AccB1I GGYRCC 1 cut(s) 368
AccB7I CCANNNNNTGG 1 cut(s) 787
AccII CGCG 2 cut(s) 110, 326
AciI CCGC 2 cut(s) 108, 110
AcsI RAATTY 1 cut(s) 313
AcyI GRCGYC 1 cut(s) 96
AdeI CACNNNGTG 1 cut(s) 821
AfaI GTAC 2 cut(s) 557, 1071
AfiI CCNNNNNNNGG 2 cut(s) 212, 787
AflIII ACRYGT 2 cut(s) 134, 324
AgsI TTSAA 5 cut(s) 513, 718, 739, 871, 1100
AhlI ACTAGT 1 cut(s) 626
AjuI GAANNNNNNNTTGG 3 cut(s) 32, 332, 364
AleI CACNNNNGTG 1 cut(s) 1061
AluBI AGCT 9 cut(s) 25, 491, 509, 530, 753, 857, 892, 931, 1016
AluI AGCT 9 cut(s) 25, 491, 509, 530, 753, 857, 892, 931, 1016
Alw21I GWGCWC 1 cut(s) 894
Alw26I GTCTC 3 cut(s) 22, 386, 1025
AoxI GGCC 2 cut(s) 121, 547
ApeKI GCWGC 2 cut(s) 527, 1013
ApoI RAATTY 1 cut(s) 313
Asp700I GAANNNNTTC 1 cut(s) 317
AspS9I GGNCC 2 cut(s) 1111, 1131
AsuC2I CCSGG 2 cut(s) 1115, 1149
AsuHPI GGTGA 6 cut(s) 88, 91, 148, 220, 665, 1129
AvaII GGWCC 2 cut(s) 1111, 1131
BanI GGYRCC 1 cut(s) 368
BanII GRGCYC 1 cut(s) 894
BauI CACGAG 1 cut(s) 551
BbsI GAAGAC 1 cut(s) 606
Bbv12I GWGCWC 1 cut(s) 894
BbvI GCAGC 2 cut(s) 539, 1025
BccI CCATC 3 cut(s) 641, 917, 929
BceAI ACGGC 1 cut(s) 131
BcgI CGANNNNNNTGC 2 cut(s) 757, 791
BciVI GTATCC 1 cut(s) 301
BcnI CCSGG 2 cut(s) 1115, 1149
BcoDI GTCTC 3 cut(s) 22, 386, 1025
BcuI ACTAGT 1 cut(s) 626
BfaI CTAG 1 cut(s) 627
BfuAI ACCTGC 1 cut(s) 440
BfuI GTATCC 1 cut(s) 301
BisI GCNGC 3 cut(s) 108, 528, 1014
BlpI GCTNAGC 1 cut(s) 888
BlsI GCNGC 3 cut(s) 109, 529, 1015
Bme1390I CCNGG 2 cut(s) 1115, 1149
Bme18I GGWCC 2 cut(s) 1111, 1131
BmgT120I GGNCC 2 cut(s) 1111, 1131
BmiI GGNNCC 5 cut(s) 370, 919, 1047, 1112, 1113
BmrFI CCNGG 2 cut(s) 1115, 1149
BmrI ACTGGG 1 cut(s) 194
BmsI GCATC 3 cut(s) 192, 679, 1129
BmuI ACTGGG 1 cut(s) 194
BoxI GACNNNNGTC 1 cut(s) 95
BpiI GAAGAC 1 cut(s) 606
BpmI CTGGAG 1 cut(s) 267
Bpu1102I GCTNAGC 1 cut(s) 888
BpuMI CCSGG 2 cut(s) 1115, 1149
BsaBI GATNNNNATC 1 cut(s) 1143
BsaHI GRCGYC 1 cut(s) 96
BsaJI CCNNGG 4 cut(s) 108, 364, 1134, 1148
BsaWI WCCGGW 1 cut(s) 158
Bsc4I CCNNNNNNNGG 2 cut(s) 212, 787
Bse118I RCCGGY 1 cut(s) 205
Bse1I ACTGG 2 cut(s) 83, 189
Bse8I GATNNNNATC 1 cut(s) 1143
BseDI CCNNGG 4 cut(s) 108, 364, 1134, 1148
BseGI GGATG 1 cut(s) 1144
BseJI GATNNNNATC 1 cut(s) 1143
BseLI CCNNNNNNNGG 2 cut(s) 212, 787
BseMII CTCAG 5 cut(s) 17, 501, 879, 941, 1036
BseNI ACTGG 2 cut(s) 83, 189
BseXI GCAGC 2 cut(s) 539, 1025
Bsh1236I CGCG 2 cut(s) 110, 326
BshFI GGCC 2 cut(s) 123, 549
BshNI GGYRCC 1 cut(s) 368
BsiHKAI GWGCWC 1 cut(s) 894
BsiSI CCGG 5 cut(s) 120, 159, 206, 1115, 1148
BslFI GGGAC 2 cut(s) 202, 1124
BslI CCNNNNNNNGG 2 cut(s) 212, 787
BsmAI GTCTC 3 cut(s) 22, 386, 1025
BsmFI GGGAC 2 cut(s) 202, 1124
BsmI GAATGC 1 cut(s) 831
BsnI GGCC 2 cut(s) 123, 549
Bsp1286I GDGCHC 1 cut(s) 894
Bsp1407I TGTACA 1 cut(s) 555
Bsp143I GATC 3 cut(s) 210, 458, 655
Bsp1720I GCTNAGC 1 cut(s) 888
BspACI CCGC 2 cut(s) 108, 110
BspANI GGCC 2 cut(s) 123, 549
BspCNI CTCAG 5 cut(s) 18, 500, 880, 940, 1035
BspFNI CGCG 2 cut(s) 110, 326
BspHI TCATGA 1 cut(s) 643
BspLI GGNNCC 5 cut(s) 370, 919, 1047, 1112, 1113
BspMI ACCTGC 1 cut(s) 440
BspT107I GGYRCC 1 cut(s) 368
BsrFI RCCGGY 1 cut(s) 205
BsrGI TGTACA 1 cut(s) 555
BsrI ACTGG 2 cut(s) 83, 189
BssAI RCCGGY 1 cut(s) 205
BssECI CCNNGG 4 cut(s) 108, 364, 1134, 1148
BssMI GATC 3 cut(s) 210, 458, 655
BssNI GRCGYC 1 cut(s) 96
BssSI CACGAG 1 cut(s) 551
BssT1I CCWWGG 2 cut(s) 364, 1134
Bst2BI CACGAG 1 cut(s) 551
Bst4CI ACNGT 8 cut(s) 46, 103, 178, 373, 380, 608, 900, 1063
Bst6I CTCTTC 1 cut(s) 261
BstACI GRCGYC 1 cut(s) 96
BstAUI TGTACA 1 cut(s) 555
BstDEI CTNAG 7 cut(s) 26, 487, 699, 723, 888, 927, 1022
BstDSI CCRYGG 1 cut(s) 108
BstEII GGTNACC 1 cut(s) 904
BstF5I GGATG 1 cut(s) 1144
BstFNI CGCG 2 cut(s) 110, 326
BstKTI GATC 3 cut(s) 213, 461, 658
BstMAI GTCTC 3 cut(s) 22, 386, 1025
BstMBI GATC 3 cut(s) 210, 458, 655
BstMWI GCNNNNNNNGC 3 cut(s) 293, 398, 812
BstNSI RCATGY 1 cut(s) 138
BstPAI GACNNNNGTC 1 cut(s) 95
BstPI GGTNACC 1 cut(s) 904
BstSCI CCNGG 2 cut(s) 1113, 1147
BstUI CGCG 2 cut(s) 110, 326
BstV1I GCAGC 2 cut(s) 539, 1025
BstV2I GAAGAC 1 cut(s) 606
BsuI GTATCC 1 cut(s) 301
BsuRI GGCC 2 cut(s) 123, 549
BtgI CCRYGG 1 cut(s) 108
BtsCI GGATG 1 cut(s) 1144
BtsIMutI CAGTG 3 cut(s) 90, 1030, 1068
BveI ACCTGC 1 cut(s) 440
CciI TCATGA 1 cut(s) 643
Cfr10I RCCGGY 1 cut(s) 205
Cfr13I GGNCC 2 cut(s) 1111, 1131
Cfr42I CCGCGG 1 cut(s) 111
Csp6I GTAC 2 cut(s) 556, 1070
CspCI CAANNNNNGTGG 4 cut(s) 1068, 1088, 1103, 1123
CviAII CATG 6 cut(s) 135, 389, 559, 587, 644, 1041
CviQI GTAC 2 cut(s) 556, 1070
DdeI CTNAG 7 cut(s) 26, 487, 699, 723, 888, 927, 1022
DpnI GATC 3 cut(s) 212, 460, 657
DpnII GATC 3 cut(s) 210, 458, 655
DraIII CACNNNGTG 1 cut(s) 821
DrdI GACNNNNNNGTC 1 cut(s) 101
DseDI GACNNNNNNGTC 1 cut(s) 101
Eam1104I CTCTTC 1 cut(s) 261
EarI CTCTTC 1 cut(s) 261
Ecl136II GAGCTC 1 cut(s) 892
Eco130I CCWWGG 2 cut(s) 364, 1134
Eco24I GRGCYC 1 cut(s) 894
Eco47I GGWCC 2 cut(s) 1111, 1131
Eco53kI GAGCTC 1 cut(s) 892
Eco91I GGTNACC 1 cut(s) 904
EcoICRI GAGCTC 1 cut(s) 892
EcoO109I RGGNCCY 1 cut(s) 1111
EcoO65I GGTNACC 1 cut(s) 904
EcoT14I CCWWGG 2 cut(s) 364, 1134
EcoT22I ATGCAT 1 cut(s) 1144
EcoT38I GRGCYC 1 cut(s) 894
ErhI CCWWGG 2 cut(s) 364, 1134
FaeI CATG 6 cut(s) 138, 392, 562, 590, 647, 1044
FaqI GGGAC 2 cut(s) 202, 1124
FatI CATG 6 cut(s) 134, 388, 558, 586, 643, 1040
Fnu4HI GCNGC 3 cut(s) 108, 528, 1014
FokI GGATG 1 cut(s) 1151
FriOI GRGCYC 1 cut(s) 894
Fsp4HI GCNGC 3 cut(s) 108, 528, 1014
FspBI CTAG 1 cut(s) 627
GluI GCNGC 3 cut(s) 108, 528, 1014
GsuI CTGGAG 1 cut(s) 267
HaeIII GGCC 2 cut(s) 123, 549
HapII CCGG 5 cut(s) 120, 159, 206, 1115, 1148
Hin1I GRCGYC 1 cut(s) 96
Hin1II CATG 6 cut(s) 138, 392, 562, 590, 647, 1044
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HinfI GANTC 5 cut(s) 60, 217, 237, 343, 1001
HpaII CCGG 5 cut(s) 120, 159, 206, 1115, 1148
HphI GGTGA 6 cut(s) 88, 91, 148, 220, 665, 1129
Hpy166II GTNNAC 4 cut(s) 376, 556, 1009, 1120
Hpy188I TCNGA 4 cut(s) 67, 226, 261, 458
Hpy188III TCNNGA 6 cut(s) 57, 214, 468, 644, 715, 1100
Hpy8I GTNNAC 4 cut(s) 376, 556, 1009, 1120
Hpy99I CGWCG 1 cut(s) 107
HpyAV CCTTC 3 cut(s) 297, 820, 1122
HpyCH4III ACNGT 8 cut(s) 46, 103, 178, 373, 380, 608, 900, 1063
HpyCH4IV ACGT 2 cut(s) 96, 970
HpyCH4V TGCA 5 cut(s) 479, 527, 692, 829, 1142
HpyF10VI GCNNNNNNNGC 3 cut(s) 293, 398, 812
HpyF3I CTNAG 7 cut(s) 26, 487, 699, 723, 888, 927, 1022
HpySE526I ACGT 2 cut(s) 96, 970
Hsp92I GRCGYC 1 cut(s) 96
Hsp92II CATG 6 cut(s) 138, 392, 562, 590, 647, 1044
KflI GGGWCCC 1 cut(s) 1111
KspI CCGCGG 1 cut(s) 111
Kzo9I GATC 3 cut(s) 210, 458, 655
LmnI GCTCC 2 cut(s) 122, 923
Lsp1109I GCAGC 2 cut(s) 539, 1025
LweI GCATC 3 cut(s) 192, 679, 1129
MaeI CTAG 1 cut(s) 627
MaeII ACGT 2 cut(s) 96, 970
MaeIII GTNAC 7 cut(s) 97, 172, 498, 582, 793, 904, 1075
MalI GATC 3 cut(s) 212, 460, 657
MboI GATC 3 cut(s) 210, 458, 655
MboII GAAGA 5 cut(s) 248, 269, 310, 611, 626
MhlI GDGCHC 1 cut(s) 894
MluCI AATT 4 cut(s) 313, 462, 513, 947
MluI ACGCGT 1 cut(s) 324
MnlI CCTC 4 cut(s) 278, 291, 560, 573
Mph1103I ATGCAT 1 cut(s) 1144
MroXI GAANNNNTTC 1 cut(s) 317
MseI TTAA 1 cut(s) 683
MslI CAYNNNNRTG 5 cut(s) 393, 591, 645, 648, 1061
MspA1I CMGCKG 1 cut(s) 110
MspI CCGG 5 cut(s) 120, 159, 206, 1115, 1148
MspR9I CCNGG 2 cut(s) 1115, 1149
Mva1269I GAATGC 1 cut(s) 831
MvnI CGCG 2 cut(s) 110, 326
MwoI GCNNNNNNNGC 3 cut(s) 293, 398, 812
NciI CCSGG 2 cut(s) 1115, 1149
NdeII GATC 3 cut(s) 210, 458, 655
NlaIII CATG 6 cut(s) 138, 392, 562, 590, 647, 1044
NlaIV GGNNCC 5 cut(s) 370, 919, 1047, 1112, 1113
NmuCI GTSAC 2 cut(s) 97, 172
NsiI ATGCAT 1 cut(s) 1144
NspI RCATGY 1 cut(s) 138
OliI CACNNNNGTG 1 cut(s) 1061
PagI TCATGA 1 cut(s) 643
PaqCI CACCTGC 1 cut(s) 440
PciI ACATGT 1 cut(s) 134
PctI GAATGC 1 cut(s) 831
PdmI GAANNNNTTC 1 cut(s) 317
PfeI GAWTC 5 cut(s) 60, 217, 237, 343, 1001
PflMI CCANNNNNTGG 1 cut(s) 787
PkrI GCNGC 3 cut(s) 109, 529, 1015
PpuMI RGGWCCY 1 cut(s) 1111
PscI ACATGT 1 cut(s) 134
PshAI GACNNNNGTC 1 cut(s) 95
Psp124BI GAGCTC 1 cut(s) 894
Psp5II RGGWCCY 1 cut(s) 1111
PspEI GGTNACC 1 cut(s) 904
PspN4I GGNNCC 5 cut(s) 370, 919, 1047, 1112, 1113
PspPI GGNCC 2 cut(s) 1111, 1131
PspPPI RGGWCCY 1 cut(s) 1111
RsaI GTAC 2 cut(s) 557, 1071
RsaNI GTAC 2 cut(s) 556, 1070
RseI CAYNNNNRTG 5 cut(s) 393, 591, 645, 648, 1061
SacI GAGCTC 1 cut(s) 894
SacII CCGCGG 1 cut(s) 111
SaqAI TTAA 1 cut(s) 683
SatI GCNGC 3 cut(s) 108, 528, 1014
Sau3AI GATC 3 cut(s) 210, 458, 655
Sau96I GGNCC 2 cut(s) 1111, 1131
ScrFI CCNGG 2 cut(s) 1115, 1149
SduI GDGCHC 1 cut(s) 894
SfaNI GCATC 3 cut(s) 192, 679, 1129
Sfr303I CCGCGG 1 cut(s) 111
SgrBI CCGCGG 1 cut(s) 111
SinI GGWCC 2 cut(s) 1111, 1131
SmiMI CAYNNNNRTG 5 cut(s) 393, 591, 645, 648, 1061
SpeI ACTAGT 1 cut(s) 626
Sse9I AATT 4 cut(s) 313, 462, 513, 947
SsiI CCGC 2 cut(s) 108, 110
SspMI CTAG 1 cut(s) 627
SstI GAGCTC 1 cut(s) 894
StyD4I CCNGG 2 cut(s) 1113, 1147
StyI CCWWGG 2 cut(s) 364, 1134
TaaI ACNGT 8 cut(s) 46, 103, 178, 373, 380, 608, 900, 1063
TaiI ACGT 2 cut(s) 99, 973
TaqI TCGA 1 cut(s) 351
TasI AATT 4 cut(s) 313, 462, 513, 947
TatI WGTACW 1 cut(s) 555
TauI GCSGC 1 cut(s) 110
TfiI GAWTC 5 cut(s) 60, 217, 237, 343, 1001
Tru1I TTAA 1 cut(s) 683
Tru9I TTAA 1 cut(s) 683
TscAI CASTG 3 cut(s) 90, 1030, 1068
TseFI GTSAC 2 cut(s) 97, 172
TseI GCWGC 2 cut(s) 527, 1013
Tsp45I GTSAC 2 cut(s) 97, 172
TspDTI ATGAA 2 cut(s) 612, 627
TspRI CASTG 3 cut(s) 90, 1030, 1068
Van91I CCANNNNNTGG 1 cut(s) 787
VpaK11BI GGWCC 2 cut(s) 1111, 1131
XapI RAATTY 1 cut(s) 313
XceI RCATGY 1 cut(s) 138
XmnI GAANNNNTTC 1 cut(s) 317
XspI CTAG 1 cut(s) 627
ZraI GACGTC 1 cut(s) 97
Zsp2I ATGCAT 1 cut(s) 1144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.