FvH4_2g15722

Hippocampus abundant

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
13793125 .. 13796722
3598 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g15722.t1

Sequence Viewer

Length: 1386 bp
ATGGAGGATAGTCTGTGCAGATCGAGTTGTGGAGGTGAAGAGATGAAAGCGGCAGGGACAATGGAGAAGAGAGAGTTGGTGCACCTTTTCGTGACGGTGTTCCTCTCTTCGTTTTCGATTTTCTTGGTTTTTCCGGCCATCACCGACGTCACCGTCGCGGCGGTTTGCCCCAGTCGGGAAAGCTGCTCTCTTGCCATTTACCTCACTGGGTTTCAACAAGCGATCATAGGATTGGGAACGGTGGTGATGAATCCGGTAATTGGGAACCTATCGGACCTCTATGGGCGGAAGGCTCTGCTCACATTCCCATTGACACTATCCATTATCCCACTAGCAATATTAGCATTTAGCCGGGAGACCAACTTCTTCTATGCTTTCTTTGTGCTGAGGACCCTAACTGCCATGACATGTGAAGGCAGCGTCAACTGCCTCGCCCTCGCTTACATTGCAGACAACATTTCAGAGAAAGAAAGAGTATCTACATTTGGAATTCTAGCTGGGTGTACCTCCGCATCATTTGTCTGTGGAACTTTAGTAGCTCGTATCCTCCCCACTTCGTCAACATTTCAGGTTGCTGCCTTAGCTTCAATGATGGCGGCTGTTTACATGAGAATTTTTCTCAAAGAAACCAGGCTACCAGATCATGGGGATAGCACTTTGAGCCAGCCTATCTTGAAGGGATCAGAACCAGTACCAGACCGAATCACAGAGGATGACGATTATACTCCGAAAACAAAAATTGCATTTAAGAAGATGCCATCAGCTGGGGATCTTTTTAGATTACTTAGGAGTAGTAAGACCCTGTCACAAGCTGGTATTATTTCCTTCTTTCAGAGCCTAGCAGAAGGGGGCATGCAAGTTACGGTCATGTATTTTCTTAAGGCTCGTTTTCAGTTCGACAAAAACCAGTTTTCTGATATAATGCTCCTTGTGGGGATAGCAGGAGCCATATCACAGATGATTCTCATTCCCATGTTGGCACCTAAAATCCGAGAGGAAAAGATGCTGTCATTTGGGCTCTTACTGAGCTGTATTAGTATGTTTCTAAACAGTGTCGCTTGGGCACCTTGGGTTCCTTATGCAGCTACTGTGTTTTCTTCTTTCGGCTTATTAGCACAACCAACTATTCACAGCATTGCATCAAAACAAGTTGGACCAACTGAGCAGGGAAAGGCTCAAGGATGCATGGCAGGCATAAGCTCCTTTGCCAACATTGTTTCTCCATTAGTTTTTAGCCCTTTGACAGCTTTATTTTTGTCTAAAGATGCACCGCTCAATTTCCCTGGCTTCAGTATTATGTGCCTTGGACTTGCAACGGTCATTGCCTTAATTCAGAGTACTATGATAAGGGCCTCTCCTCCTATTTCAAGTCACAGTTTTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

462

Amino Acids

49.75

Weight (kDa)

8.24

Isoelectric Point (pI)

44.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 29 - 408 4.2e-32 Major Facilitator Superfamily
Sugar_tr PF00083 62 - 185 9.4e-06 Sugar (and other) transporter
MFS_1 PF07690 274 - 437 4.4e-09 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 152
AatII GACGTC 1 cut(s) 150
AccB1I GGYRCC 2 cut(s) 979, 1063
AccB7I CCANNNNNTGG 2 cut(s) 644, 764
AccBSI CCGCTC 1 cut(s) 1273
AccII CGCG 1 cut(s) 158
AciI CCGC 7 cut(s) 50, 158, 161, 286, 510, 596, 1271
AclWI GGATC 2 cut(s) 688, 777
AcoI YGGCCR 1 cut(s) 135
AcsI RAATTY 2 cut(s) 489, 612
AcuI CTGAAG 1 cut(s) 1273
AcyI GRCGYC 1 cut(s) 147
AfaI GTAC 3 cut(s) 505, 693, 1339
AfiI CCNNNNNNNGG 4 cut(s) 175, 260, 644, 764
AflII CTTAAG 1 cut(s) 878
AflIII ACRYGT 1 cut(s) 407
AgsI TTSAA 4 cut(s) 215, 588, 676, 1368
AjnI CCWGG 2 cut(s) 629, 1282
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
Alw21I GWGCWC 1 cut(s) 84
Alw26I GTCTC 1 cut(s) 350
Alw44I GTGCAC 1 cut(s) 80
AlwI GGATC 2 cut(s) 688, 777
AlwNI CAGNNNCTG 1 cut(s) 1088
AoxI GGCC 2 cut(s) 135, 1350
ApaLI GTGCAC 1 cut(s) 80
ApeKI GCWGC 4 cut(s) 183, 417, 575, 1082
ApoI RAATTY 2 cut(s) 489, 612
AspS9I GGNCC 4 cut(s) 274, 390, 1154, 1350
AsuC2I CCSGG 1 cut(s) 353
AsuHPI GGTGA 4 cut(s) 47, 133, 142, 256
AvaII GGWCC 3 cut(s) 274, 390, 1154
BaeGI GKGCMC 2 cut(s) 84, 1066
BanI GGYRCC 2 cut(s) 979, 1063
BanII GRGCYC 1 cut(s) 1020
Bbv12I GWGCWC 1 cut(s) 84
BbvCI CCTCAGC 1 cut(s) 386
BbvI GCAGC 4 cut(s) 170, 429, 562, 1094
BccI CCATC 3 cut(s) 146, 586, 766
BciT130I CCWGG 2 cut(s) 631, 1284
BciVI GTATCC 1 cut(s) 554
BcnI CCSGG 1 cut(s) 353
BcoDI GTCTC 1 cut(s) 350
BfaI CTAG 4 cut(s) 332, 494, 839, 1384
BfrI CTTAAG 1 cut(s) 878
BfuI GTATCC 1 cut(s) 554
BisI GCNGC 7 cut(s) 51, 159, 184, 418, 576, 597, 1083
BlsI GCNGC 7 cut(s) 52, 160, 185, 419, 577, 598, 1084
BmcAI AGTACT 1 cut(s) 1339
Bme1390I CCNGG 3 cut(s) 353, 631, 1284
Bme18I GGWCC 3 cut(s) 274, 390, 1154
BmgT120I GGNCC 4 cut(s) 274, 390, 1154, 1350
BmiI GGNNCC 6 cut(s) 266, 392, 946, 981, 1065, 1074
BmrFI CCNGG 3 cut(s) 353, 631, 1284
BmrI ACTGGG 2 cut(s) 165, 216
BmsI GCATC 6 cut(s) 521, 744, 993, 1148, 1172, 1255
BmuI ACTGGG 2 cut(s) 165, 216
Bpu10I CCTNAGC 2 cut(s) 386, 580
BpuEI CTTGAG 1 cut(s) 1161
BpuMI CCSGG 1 cut(s) 353
BsaHI GRCGYC 1 cut(s) 147
BsaI GGTCTC 1 cut(s) 350
BsaJI CCNNGG 3 cut(s) 1067, 1282, 1303
BsaWI WCCGGW 1 cut(s) 253
Bsc4I CCNNNNNNNGG 4 cut(s) 175, 260, 644, 764
Bse1I ACTGG 4 cut(s) 171, 211, 689, 907
Bse3DI GCAATG 3 cut(s) 444, 1134, 1320
BseBI CCWGG 2 cut(s) 631, 1284
BseDI CCNNGG 3 cut(s) 1067, 1282, 1303
BseGI GGATG 2 cut(s) 718, 1187
BseLI CCNNNNNNNGG 4 cut(s) 175, 260, 644, 764
BseMI GCAATG 3 cut(s) 444, 1134, 1320
BseMII CTCAG 3 cut(s) 377, 1016, 1152
BseNI ACTGG 4 cut(s) 171, 211, 689, 907
BseRI GAGGAG 1 cut(s) 1347
BseSI GKGCMC 2 cut(s) 84, 1066
BseXI GCAGC 4 cut(s) 170, 429, 562, 1094
BseYI CCCAGC 2 cut(s) 497, 764
BsgI GTGCAG 1 cut(s) 37
Bsh1236I CGCG 1 cut(s) 158
BshFI GGCC 2 cut(s) 137, 1352
BshNI GGYRCC 2 cut(s) 979, 1063
BsiHKAI GWGCWC 1 cut(s) 84
BsiSI CCGG 3 cut(s) 134, 254, 352
BslFI GGGAC 1 cut(s) 70
BslI CCNNNNNNNGG 4 cut(s) 175, 260, 644, 764
BsmAI GTCTC 1 cut(s) 350
BsmFI GGGAC 1 cut(s) 70
BsnI GGCC 2 cut(s) 137, 1352
Bso31I GGTCTC 1 cut(s) 350
Bsp1286I GDGCHC 3 cut(s) 84, 1020, 1066
Bsp143I GATC 5 cut(s) 20, 222, 640, 680, 769
BspACI CCGC 7 cut(s) 50, 158, 161, 286, 510, 596, 1271
BspANI GGCC 2 cut(s) 137, 1352
BspCNI CTCAG 3 cut(s) 378, 1017, 1153
BspFNI CGCG 1 cut(s) 158
BspLI GGNNCC 6 cut(s) 266, 392, 946, 981, 1065, 1074
BspPI GGATC 2 cut(s) 688, 777
BspT107I GGYRCC 2 cut(s) 979, 1063
BspTI CTTAAG 1 cut(s) 878
BspTNI GGTCTC 1 cut(s) 350
BsrBI CCGCTC 1 cut(s) 1273
BsrDI GCAATG 3 cut(s) 444, 1134, 1320
BsrI ACTGG 4 cut(s) 171, 211, 689, 907
BssECI CCNNGG 3 cut(s) 1067, 1282, 1303
BssMI GATC 5 cut(s) 20, 222, 640, 680, 769
BssNI GRCGYC 1 cut(s) 147
BssT1I CCWWGG 2 cut(s) 1067, 1303
Bst2UI CCWGG 2 cut(s) 631, 1284
Bst4CI ACNGT 8 cut(s) 97, 154, 241, 865, 1052, 1090, 1318, 1376
Bst6I CTCTTC 3 cut(s) 33, 62, 112
BstACI GRCGYC 1 cut(s) 147
BstAFI CTTAAG 1 cut(s) 878
BstC8I GCNNGC 3 cut(s) 665, 854, 1192
BstDEI CTNAG 5 cut(s) 386, 580, 785, 1025, 1161
BstF5I GGATG 2 cut(s) 718, 1187
BstFNI CGCG 1 cut(s) 158
BstKTI GATC 5 cut(s) 23, 225, 643, 683, 772
BstMAI GTCTC 1 cut(s) 350
BstMBI GATC 5 cut(s) 20, 222, 640, 680, 769
BstMWI GCNNNNNNNGC 6 cut(s) 341, 426, 446, 581, 660, 1191
BstNI CCWGG 2 cut(s) 631, 1284
BstNSI RCATGY 2 cut(s) 411, 856
BstSCI CCNGG 3 cut(s) 351, 629, 1282
BstSLI GKGCMC 2 cut(s) 84, 1066
BstUI CGCG 1 cut(s) 158
BstV1I GCAGC 4 cut(s) 170, 429, 562, 1094
BstX2I RGATCY 1 cut(s) 769
BstYI RGATCY 1 cut(s) 769
BsuI GTATCC 1 cut(s) 554
BsuRI GGCC 2 cut(s) 137, 1352
BtsCI GGATG 2 cut(s) 718, 1187
BtsIMutI CAGTG 2 cut(s) 204, 1057
Cac8I GCNNGC 3 cut(s) 665, 854, 1192
CaiI CAGNNNCTG 1 cut(s) 1088
Cfr13I GGNCC 4 cut(s) 274, 390, 1154, 1350
CseI GACGC 1 cut(s) 409
Csp6I GTAC 3 cut(s) 504, 692, 1338
CviAII CATG 8 cut(s) 403, 408, 607, 644, 853, 868, 973, 1186
CviQI GTAC 3 cut(s) 504, 692, 1338
DdeI CTNAG 5 cut(s) 386, 580, 785, 1025, 1161
DpnI GATC 5 cut(s) 22, 224, 642, 682, 771
DpnII GATC 5 cut(s) 20, 222, 640, 680, 769
DrdI GACNNNNNNGTC 1 cut(s) 152
DseDI GACNNNNNNGTC 1 cut(s) 152
EaeI YGGCCR 1 cut(s) 135
Eam1104I CTCTTC 3 cut(s) 33, 62, 112
EarI CTCTTC 3 cut(s) 33, 62, 112
EciI GGCGGA 1 cut(s) 301
Eco130I CCWWGG 2 cut(s) 1067, 1303
Eco24I GRGCYC 1 cut(s) 1020
Eco31I GGTCTC 1 cut(s) 350
Eco47I GGWCC 3 cut(s) 274, 390, 1154
Eco57I CTGAAG 1 cut(s) 1273
EcoO109I RGGNCCY 2 cut(s) 390, 1350
EcoRI GAATTC 1 cut(s) 489
EcoRII CCWGG 2 cut(s) 629, 1282
EcoT14I CCWWGG 2 cut(s) 1067, 1303
EcoT22I ATGCAT 1 cut(s) 1187
EcoT38I GRGCYC 1 cut(s) 1020
ErhI CCWWGG 2 cut(s) 1067, 1303
FaeI CATG 8 cut(s) 406, 411, 610, 647, 856, 871, 976, 1189
FaqI GGGAC 1 cut(s) 70
FatI CATG 8 cut(s) 402, 407, 606, 643, 852, 867, 972, 1185
Fnu4HI GCNGC 7 cut(s) 51, 159, 184, 418, 576, 597, 1083
FokI GGATG 2 cut(s) 725, 1194
FriOI GRGCYC 1 cut(s) 1020
Fsp4HI GCNGC 7 cut(s) 51, 159, 184, 418, 576, 597, 1083
FspBI CTAG 4 cut(s) 332, 494, 839, 1384
GluI GCNGC 7 cut(s) 51, 159, 184, 418, 576, 597, 1083
GsaI CCCAGC 2 cut(s) 501, 768
HaeIII GGCC 2 cut(s) 137, 1352
HapII CCGG 3 cut(s) 134, 254, 352
HgaI GACGC 1 cut(s) 409
Hin1I GRCGYC 1 cut(s) 147
Hin1II CATG 8 cut(s) 406, 411, 610, 647, 856, 871, 976, 1189
HincII GTYRAC 2 cut(s) 424, 561
HindII GTYRAC 2 cut(s) 424, 561
HinfI GANTC 3 cut(s) 250, 702, 961
HpaII CCGG 3 cut(s) 134, 254, 352
HphI GGTGA 4 cut(s) 47, 133, 142, 256
Hpy166II GTNNAC 5 cut(s) 82, 424, 504, 561, 604
Hpy188I TCNGA 8 cut(s) 274, 463, 685, 729, 834, 916, 992, 1335
Hpy188III TCNNGA 3 cut(s) 91, 176, 673
Hpy8I GTNNAC 5 cut(s) 82, 424, 504, 561, 604
Hpy99I CGWCG 2 cut(s) 149, 158
HpyAV CCTTC 5 cut(s) 283, 407, 670, 835, 839
HpyCH4III ACNGT 8 cut(s) 97, 154, 241, 865, 1052, 1090, 1318, 1376
HpyCH4IV ACGT 1 cut(s) 147
HpyF10VI GCNNNNNNNGC 6 cut(s) 341, 426, 446, 581, 660, 1191
HpyF3I CTNAG 5 cut(s) 386, 580, 785, 1025, 1161
HpySE526I ACGT 1 cut(s) 147
Hsp92I GRCGYC 1 cut(s) 147
Hsp92II CATG 8 cut(s) 406, 411, 610, 647, 856, 871, 976, 1189
Kzo9I GATC 5 cut(s) 20, 222, 640, 680, 769
LmnI GCTCC 3 cut(s) 930, 944, 1205
Lsp1109I GCAGC 4 cut(s) 170, 429, 562, 1094
LweI GCATC 6 cut(s) 521, 744, 993, 1148, 1172, 1255
MaeI CTAG 4 cut(s) 332, 494, 839, 1384
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 5 cut(s) 91, 148, 804, 859, 1370
MalI GATC 5 cut(s) 22, 224, 642, 682, 771
MbiI CCGCTC 1 cut(s) 1273
MboI GATC 5 cut(s) 20, 222, 640, 680, 769
MboII GAAGA 6 cut(s) 50, 79, 99, 358, 763, 1089
MflI RGATCY 1 cut(s) 769
MhlI GDGCHC 3 cut(s) 84, 1020, 1066
MluCI AATT 6 cut(s) 258, 489, 612, 738, 1276, 1329
MmeI TCCRAC 1 cut(s) 1132
Mph1103I ATGCAT 1 cut(s) 1187
MseI TTAA 3 cut(s) 747, 879, 1328
MslI CAYNNNNRTG 1 cut(s) 971
MspA1I CMGCKG 1 cut(s) 764
MspCI CTTAAG 1 cut(s) 878
MspI CCGG 3 cut(s) 134, 254, 352
MspR9I CCNGG 3 cut(s) 353, 631, 1284
MvaI CCWGG 2 cut(s) 631, 1284
MvnI CGCG 1 cut(s) 158
MwoI GCNNNNNNNGC 6 cut(s) 341, 426, 446, 581, 660, 1191
NciI CCSGG 1 cut(s) 353
NdeII GATC 5 cut(s) 20, 222, 640, 680, 769
NlaIII CATG 8 cut(s) 406, 411, 610, 647, 856, 871, 976, 1189
NlaIV GGNNCC 6 cut(s) 266, 392, 946, 981, 1065, 1074
NmuCI GTSAC 4 cut(s) 91, 148, 804, 1370
NsiI ATGCAT 1 cut(s) 1187
NspI RCATGY 2 cut(s) 411, 856
PaeI GCATGC 1 cut(s) 856
PciI ACATGT 1 cut(s) 407
PfeI GAWTC 3 cut(s) 250, 702, 961
PflFI GACNNNGTC 1 cut(s) 802
PflMI CCANNNNNTGG 2 cut(s) 644, 764
PkrI GCNGC 7 cut(s) 52, 160, 185, 419, 577, 598, 1084
PpuMI RGGWCCY 1 cut(s) 390
PscI ACATGT 1 cut(s) 407
Psp5II RGGWCCY 1 cut(s) 390
Psp6I CCWGG 2 cut(s) 629, 1282
PspFI CCCAGC 2 cut(s) 497, 764
PspGI CCWGG 2 cut(s) 629, 1282
PspN4I GGNNCC 6 cut(s) 266, 392, 946, 981, 1065, 1074
PspPI GGNCC 4 cut(s) 274, 390, 1154, 1350
PspPPI RGGWCCY 1 cut(s) 390
PstNI CAGNNNCTG 1 cut(s) 1088
PsuI RGATCY 1 cut(s) 769
PsyI GACNNNGTC 1 cut(s) 802
PvuII CAGCTG 1 cut(s) 764
RsaI GTAC 3 cut(s) 505, 693, 1339
RsaNI GTAC 3 cut(s) 504, 692, 1338
RseI CAYNNNNRTG 1 cut(s) 971
SaqAI TTAA 3 cut(s) 747, 879, 1328
SatI GCNGC 7 cut(s) 51, 159, 184, 418, 576, 597, 1083
Sau3AI GATC 5 cut(s) 20, 222, 640, 680, 769
Sau96I GGNCC 4 cut(s) 274, 390, 1154, 1350
ScaI AGTACT 1 cut(s) 1339
ScrFI CCNGG 3 cut(s) 353, 631, 1284
SduI GDGCHC 3 cut(s) 84, 1020, 1066
SfaNI GCATC 6 cut(s) 521, 744, 993, 1148, 1172, 1255
SinI GGWCC 3 cut(s) 274, 390, 1154
SmiMI CAYNNNNRTG 1 cut(s) 971
SmlI CTYRAG 2 cut(s) 878, 1176
SmoI CTYRAG 2 cut(s) 878, 1176
SphI GCATGC 1 cut(s) 856
Sse9I AATT 6 cut(s) 258, 489, 612, 738, 1276, 1329
SsiI CCGC 7 cut(s) 50, 158, 161, 286, 510, 596, 1271
SspI AATATT 1 cut(s) 339
SspMI CTAG 4 cut(s) 332, 494, 839, 1384
StyD4I CCNGG 3 cut(s) 351, 629, 1282
StyI CCWWGG 2 cut(s) 1067, 1303
TaaI ACNGT 8 cut(s) 97, 154, 241, 865, 1052, 1090, 1318, 1376
TaiI ACGT 1 cut(s) 150
TaqI TCGA 3 cut(s) 23, 116, 897
TaqII GACCGA 1 cut(s) 714
TasI AATT 6 cut(s) 258, 489, 612, 738, 1276, 1329
TatI WGTACW 1 cut(s) 1337
TauI GCSGC 3 cut(s) 53, 161, 599
TfiI GAWTC 3 cut(s) 250, 702, 961
Tru1I TTAA 3 cut(s) 747, 879, 1328
Tru9I TTAA 3 cut(s) 747, 879, 1328
TscAI CASTG 2 cut(s) 211, 1057
TseFI GTSAC 4 cut(s) 91, 148, 804, 1370
TseI GCWGC 4 cut(s) 183, 417, 575, 1082
Tsp45I GTSAC 4 cut(s) 91, 148, 804, 1370
TspDTI ATGAA 2 cut(s) 59, 263
TspRI CASTG 2 cut(s) 211, 1057
Tth111I GACNNNGTC 1 cut(s) 802
Van91I CCANNNNNTGG 2 cut(s) 644, 764
Vha464I CTTAAG 1 cut(s) 878
VneI GTGCAC 1 cut(s) 80
VpaK11BI GGWCC 3 cut(s) 274, 390, 1154
XapI RAATTY 2 cut(s) 489, 612
XceI RCATGY 2 cut(s) 411, 856
XspI CTAG 4 cut(s) 332, 494, 839, 1384
ZraI GACGTC 1 cut(s) 148
ZrmI AGTACT 1 cut(s) 1339
Zsp2I ATGCAT 1 cut(s) 1187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.