Rroxscaffold_7G00189190

Hippocampus abundant

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001419
Physical Location & Seq
Reverse (-)
28921338 .. 28926081
4744 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00189190.1

Sequence Viewer

Length: 1257 bp
ATGGAGGAGGATAGTCTCTGCAGATCGAGTATTGGTGGTGAAGAGATGAAAGGGATGGAGAAGAGCGAGTTGGGGCACCTTTTCGTGACGGTGTTCCTCTCTTCGCTTTCCATGTTCTTGGTGGTTCCGGCCATAACCGACGTCACCATAGCGGCGGTCTGCCCCGGTCGGGAAAGCTGCTCTCTTGCCATTTACCTCTCTGGGTTTCAACAAGCGATCATAGGCATGGGAACGGTGGTGATGAATCCGGTAATTGGGAACCTGTCAGACCTCTATGGGAGGAAGGCTCTGCTCACATTCCCATTGACAGTATCCATTATCCCACTAGCAATATTGGCGTATAGCCAGGAGACCAACTGTTTCTATGCTTTCTATGTGCTGAGGACCCTAACTGCCATGACATGCGAAGGCAGTGTCAACTGCCTCGCCCTCGCTTATGTGGCAGACAACATTTCAGAGAGAGAGAGAGTATCTGCATTTGGACTTCTATCTGGGTTTTTCTCCGCATCATTTGTATGTGGAACTTTAGCAGCTCGTTTCCTCCCCACTTCGTTAACATTTCAGGTTGCCGCCATAGTATCAATGCTGGCAGCTGTTTACATGAGGATTTTTCTCGAGGAAATTAGGCCATCAGATCATGGGGATAGTACTTTGAGCCAGCCTATCTTGAAGGGATTAGAACCAGCACTAGAGCGAATCGCAGATGACGATTACTCTCCAAAGACGAAAATTGAATTTAAGAAGATCCCATCTGTTGGGGATCTTATTAGCTTACTCAGGAGTAGTAAGACCCTGTCACAAGCTGGTATTATTATCTTCTTTCAGAGCCTAGCGGAAGGTGGCATGCAAGCTTCGGTCCTGATGATTTTCGTGCCCATGATGGCACCTAAAATCGGAGAGGAAAAGATGCTGTCAATCGGGCTCTCACTGAATTGTATCAGTGTTCCTTATGCAGCTACTGTGTTTTCTTCTTTTGCCTTACTAGCACAACCAACTATACGCAGCATTGCATCAAAACAAGTTGGACCGAATGAGCAGGGAAAGGCTCAAGGATGCATTTCAGGCATAAGTTCCTTTGCCAACATTGTTGCTCCATTAGTTTTCAGTCCTTTAACAGCTTTATTTTTGTCTGAAGATGCACCATTCAATTTCCCTGGCTTCAGTATTATGTGCCTTGGACTTGCAACGATCATTGCCTTAATTCAGAGTACAATGATAAGGGCTTCTCCTCCTAATTCAAGTCACAATTTAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1

Protein Analysis

418

Amino Acids

44.68

Weight (kDa)

5.26

Isoelectric Point (pI)

47.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 27 - 309 1.2e-21 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 144
AccB1I GGYRCC 2 cut(s) 75, 883
AccB7I CCANNNNNTGG 1 cut(s) 755
AciI CCGC 5 cut(s) 152, 155, 504, 570, 833
AclWI GGATC 2 cut(s) 739, 768
AcoI YGGCCR 1 cut(s) 129
AcsI RAATTY 1 cut(s) 734
AcuI CTGAAG 2 cut(s) 1144, 1152
AcyI GRCGYC 1 cut(s) 141
AfaI GTAC 2 cut(s) 649, 1210
AfiI CCNNNNNNNGG 4 cut(s) 169, 254, 755, 893
AgsI TTSAA 5 cut(s) 209, 670, 734, 1147, 1239
AjnI CCWGG 2 cut(s) 345, 1153
AjuI GAANNNNNNNTTGG 2 cut(s) 53, 85
AluBI AGCT 8 cut(s) 177, 533, 593, 771, 803, 851, 956, 1118
AluI AGCT 8 cut(s) 177, 533, 593, 771, 803, 851, 956, 1118
Alw26I GTCTC 2 cut(s) 20, 344
AlwI GGATC 2 cut(s) 739, 768
AlwNI CAGNNNCTG 1 cut(s) 959
Ama87I CYCGRG 1 cut(s) 614
AoxI GGCC 2 cut(s) 129, 626
ApeKI GCWGC 5 cut(s) 177, 530, 590, 953, 1002
ApoI RAATTY 1 cut(s) 734
ArsI GACNNNNNNTTYG 2 cut(s) 399, 431
AspS9I GGNCC 3 cut(s) 384, 856, 1025
AsuC2I CCSGG 1 cut(s) 165
AsuHPI GGTGA 3 cut(s) 50, 136, 250
AvaI CYCGRG 1 cut(s) 614
AvaII GGWCC 3 cut(s) 384, 856, 1025
BaeGI GKGCMC 2 cut(s) 78, 876
BanI GGYRCC 2 cut(s) 75, 883
BanII GRGCYC 1 cut(s) 924
BbvCI CCTCAGC 1 cut(s) 380
BbvI GCAGC 5 cut(s) 164, 542, 602, 965, 1014
BccI CCATC 4 cut(s) 49, 637, 757, 874
BciT130I CCWGG 2 cut(s) 347, 1155
BciVI GTATCC 1 cut(s) 322
BcnI CCSGG 1 cut(s) 165
BcoDI GTCTC 2 cut(s) 20, 344
BfaI CTAG 5 cut(s) 326, 689, 830, 983, 1255
BfmI CTRYAG 1 cut(s) 19
BfuI GTATCC 1 cut(s) 322
BisI GCNGC 7 cut(s) 153, 178, 531, 570, 591, 954, 1003
BlsI GCNGC 7 cut(s) 154, 179, 532, 571, 592, 955, 1004
BmcAI AGTACT 1 cut(s) 649
Bme1390I CCNGG 3 cut(s) 165, 347, 1155
Bme18I GGWCC 3 cut(s) 384, 856, 1025
BmeT110I CYCGRG 1 cut(s) 614
BmgT120I GGNCC 3 cut(s) 384, 856, 1025
BmiI GGNNCC 5 cut(s) 77, 126, 260, 386, 885
BmrFI CCNGG 3 cut(s) 165, 347, 1155
BmsI GCATC 5 cut(s) 515, 897, 1019, 1043, 1126
BplI GAGNNNNNCTC 2 cut(s) 271, 303
Bpu10I CCTNAGC 1 cut(s) 380
BpuEI CTTGAG 1 cut(s) 1032
BpuMI CCSGG 1 cut(s) 165
BsaHI GRCGYC 1 cut(s) 141
BsaI GGTCTC 1 cut(s) 344
BsaJI CCNNGG 3 cut(s) 163, 1153, 1174
BsaWI WCCGGW 1 cut(s) 247
Bsc4I CCNNNNNNNGG 4 cut(s) 169, 254, 755, 893
Bse3DI GCAATG 2 cut(s) 1005, 1191
BseBI CCWGG 2 cut(s) 347, 1155
BseDI CCNNGG 3 cut(s) 163, 1153, 1174
BseGI GGATG 2 cut(s) 60, 1058
BseLI CCNNNNNNNGG 4 cut(s) 169, 254, 755, 893
BseMI GCAATG 2 cut(s) 1005, 1191
BseMII CTCAG 2 cut(s) 371, 790
BseRI GAGGAG 2 cut(s) 20, 1218
BseSI GKGCMC 2 cut(s) 78, 876
BseXI GCAGC 5 cut(s) 164, 542, 602, 965, 1014
Bsh1285I CGRYCG 1 cut(s) 169
BshFI GGCC 2 cut(s) 131, 628
BshNI GGYRCC 2 cut(s) 75, 883
BsiEI CGRYCG 1 cut(s) 169
BsiHKCI CYCGRG 1 cut(s) 614
BsiSI CCGG 3 cut(s) 128, 165, 248
BslI CCNNNNNNNGG 4 cut(s) 169, 254, 755, 893
BsmAI GTCTC 2 cut(s) 20, 344
BsnI GGCC 2 cut(s) 131, 628
Bso31I GGTCTC 1 cut(s) 344
BsoBI CYCGRG 1 cut(s) 614
Bsp1286I GDGCHC 3 cut(s) 78, 876, 924
Bsp143I GATC 6 cut(s) 23, 216, 634, 744, 760, 1188
BspACI CCGC 5 cut(s) 152, 155, 504, 570, 833
BspANI GGCC 2 cut(s) 131, 628
BspCNI CTCAG 2 cut(s) 372, 789
BspLI GGNNCC 5 cut(s) 77, 126, 260, 386, 885
BspMAI CTGCAG 1 cut(s) 23
BspPI GGATC 2 cut(s) 739, 768
BspQI GCTCTTC 1 cut(s) 56
BspT107I GGYRCC 2 cut(s) 75, 883
BspTNI GGTCTC 1 cut(s) 344
BsrDI GCAATG 2 cut(s) 1005, 1191
BssECI CCNNGG 3 cut(s) 163, 1153, 1174
BssMI GATC 6 cut(s) 23, 216, 634, 744, 760, 1188
BssNI GRCGYC 1 cut(s) 141
BssT1I CCWWGG 1 cut(s) 1174
Bst2UI CCWGG 2 cut(s) 347, 1155
Bst4CI ACNGT 5 cut(s) 91, 235, 310, 359, 961
Bst6I CTCTTC 3 cut(s) 36, 56, 106
BstACI GRCGYC 1 cut(s) 141
BstC8I GCNNGC 4 cut(s) 588, 659, 845, 849
BstDEI CTNAG 2 cut(s) 380, 776
BstF5I GGATG 2 cut(s) 60, 1058
BstKTI GATC 6 cut(s) 26, 219, 637, 747, 763, 1191
BstMAI GTCTC 2 cut(s) 20, 344
BstMBI GATC 6 cut(s) 23, 216, 634, 744, 760, 1188
BstMCI CGRYCG 1 cut(s) 169
BstMWI GCNNNNNNNGC 4 cut(s) 335, 440, 983, 1062
BstNI CCWGG 2 cut(s) 347, 1155
BstNSI RCATGY 2 cut(s) 405, 847
BstSCI CCNGG 3 cut(s) 163, 345, 1153
BstSFI CTRYAG 1 cut(s) 19
BstSLI GKGCMC 2 cut(s) 78, 876
BstV1I GCAGC 5 cut(s) 164, 542, 602, 965, 1014
BstX2I RGATCY 2 cut(s) 744, 760
BstXI CCANNNNNNTGG 1 cut(s) 118
BstYI RGATCY 2 cut(s) 744, 760
BsuI GTATCC 1 cut(s) 322
BsuRI GGCC 2 cut(s) 131, 628
BtsCI GGATG 2 cut(s) 60, 1058
BtsI GCAGTG 1 cut(s) 418
BtsIMutI CAGTG 3 cut(s) 418, 926, 946
Cac8I GCNNGC 4 cut(s) 588, 659, 845, 849
CaiI CAGNNNCTG 1 cut(s) 959
Cfr13I GGNCC 3 cut(s) 384, 856, 1025
Csp6I GTAC 2 cut(s) 648, 1209
CviAII CATG 8 cut(s) 112, 226, 397, 402, 601, 638, 844, 877
CviQI GTAC 2 cut(s) 648, 1209
DdeI CTNAG 2 cut(s) 380, 776
DpnI GATC 6 cut(s) 25, 218, 636, 746, 762, 1190
DpnII GATC 6 cut(s) 23, 216, 634, 744, 760, 1188
EaeI YGGCCR 1 cut(s) 129
Eam1104I CTCTTC 3 cut(s) 36, 56, 106
EarI CTCTTC 3 cut(s) 36, 56, 106
Eco130I CCWWGG 1 cut(s) 1174
Eco24I GRGCYC 1 cut(s) 924
Eco31I GGTCTC 1 cut(s) 344
Eco47I GGWCC 3 cut(s) 384, 856, 1025
Eco57I CTGAAG 2 cut(s) 1144, 1152
Eco88I CYCGRG 1 cut(s) 614
EcoO109I RGGNCCY 1 cut(s) 384
EcoRII CCWGG 2 cut(s) 345, 1153
EcoT14I CCWWGG 1 cut(s) 1174
EcoT22I ATGCAT 1 cut(s) 1058
EcoT38I GRGCYC 1 cut(s) 924
ErhI CCWWGG 1 cut(s) 1174
FaeI CATG 8 cut(s) 115, 229, 400, 405, 604, 641, 847, 880
FatI CATG 8 cut(s) 111, 225, 396, 401, 600, 637, 843, 876
Fnu4HI GCNGC 7 cut(s) 153, 178, 531, 570, 591, 954, 1003
FokI GGATG 2 cut(s) 67, 1065
FriOI GRGCYC 1 cut(s) 924
Fsp4HI GCNGC 7 cut(s) 153, 178, 531, 570, 591, 954, 1003
FspBI CTAG 5 cut(s) 326, 689, 830, 983, 1255
GluI GCNGC 7 cut(s) 153, 178, 531, 570, 591, 954, 1003
HaeIII GGCC 2 cut(s) 131, 628
HapII CCGG 3 cut(s) 128, 165, 248
Hin1I GRCGYC 1 cut(s) 141
Hin1II CATG 8 cut(s) 115, 229, 400, 405, 604, 641, 847, 880
HincII GTYRAC 2 cut(s) 418, 555
HindII GTYRAC 2 cut(s) 418, 555
HindIII AAGCTT 1 cut(s) 849
HinfI GANTC 2 cut(s) 244, 696
HpaI GTTAAC 1 cut(s) 555
HpaII CCGG 3 cut(s) 128, 165, 248
HphI GGTGA 3 cut(s) 50, 136, 250
Hpy166II GTNNAC 3 cut(s) 418, 555, 598
Hpy188I TCNGA 7 cut(s) 268, 457, 634, 825, 896, 1132, 1206
Hpy188III TCNNGA 6 cut(s) 85, 170, 614, 667, 778, 859
Hpy8I GTNNAC 3 cut(s) 418, 555, 598
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 4 cut(s) 277, 401, 664, 830
HpyCH4III ACNGT 5 cut(s) 91, 235, 310, 359, 961
HpyCH4IV ACGT 1 cut(s) 141
HpyCH4V TGCA 8 cut(s) 21, 476, 847, 953, 1010, 1056, 1139, 1184
HpyF10VI GCNNNNNNNGC 4 cut(s) 335, 440, 983, 1062
HpyF3I CTNAG 2 cut(s) 380, 776
HpySE526I ACGT 1 cut(s) 141
Hsp92I GRCGYC 1 cut(s) 141
Hsp92II CATG 8 cut(s) 115, 229, 400, 405, 604, 641, 847, 880
KspAI GTTAAC 1 cut(s) 555
Kzo9I GATC 6 cut(s) 23, 216, 634, 744, 760, 1188
LguI GCTCTTC 1 cut(s) 56
LmnI GCTCC 1 cut(s) 1096
Lsp1109I GCAGC 5 cut(s) 164, 542, 602, 965, 1014
LweI GCATC 5 cut(s) 515, 897, 1019, 1043, 1126
MaeI CTAG 5 cut(s) 326, 689, 830, 983, 1255
MaeII ACGT 1 cut(s) 141
MaeIII GTNAC 4 cut(s) 85, 142, 795, 1241
MalI GATC 6 cut(s) 25, 218, 636, 746, 762, 1190
MboI GATC 6 cut(s) 23, 216, 634, 744, 760, 1188
MboII GAAGA 7 cut(s) 53, 73, 93, 754, 808, 960, 1145
MflI RGATCY 2 cut(s) 744, 760
MhlI GDGCHC 3 cut(s) 78, 876, 924
MluCI AATT 9 cut(s) 252, 621, 729, 734, 931, 1147, 1200, 1234, 1246
MmeI TCCRAC 1 cut(s) 1003
Mph1103I ATGCAT 1 cut(s) 1058
MseI TTAA 4 cut(s) 554, 738, 1112, 1199
MslI CAYNNNNRTG 2 cut(s) 224, 514
MspA1I CMGCKG 1 cut(s) 593
MspI CCGG 3 cut(s) 128, 165, 248
MspR9I CCNGG 3 cut(s) 165, 347, 1155
MvaI CCWGG 2 cut(s) 347, 1155
MwoI GCNNNNNNNGC 4 cut(s) 335, 440, 983, 1062
NciI CCSGG 1 cut(s) 165
NdeII GATC 6 cut(s) 23, 216, 634, 744, 760, 1188
NlaIII CATG 8 cut(s) 115, 229, 400, 405, 604, 641, 847, 880
NlaIV GGNNCC 5 cut(s) 77, 126, 260, 386, 885
NmuCI GTSAC 4 cut(s) 85, 142, 795, 1241
NsiI ATGCAT 1 cut(s) 1058
NspI RCATGY 2 cut(s) 405, 847
PaeI GCATGC 1 cut(s) 847
PaeR7I CTCGAG 1 cut(s) 614
PciSI GCTCTTC 1 cut(s) 56
PcsI WCGNNNNNNNCGW 1 cut(s) 705
PfeI GAWTC 2 cut(s) 244, 696
PflFI GACNNNGTC 1 cut(s) 793
PflMI CCANNNNNTGG 1 cut(s) 755
PkrI GCNGC 7 cut(s) 154, 179, 532, 571, 592, 955, 1004
PpuMI RGGWCCY 1 cut(s) 384
Psp5II RGGWCCY 1 cut(s) 384
Psp6I CCWGG 2 cut(s) 345, 1153
PspGI CCWGG 2 cut(s) 345, 1153
PspN4I GGNNCC 5 cut(s) 77, 126, 260, 386, 885
PspPI GGNCC 3 cut(s) 384, 856, 1025
PspPPI RGGWCCY 1 cut(s) 384
PstI CTGCAG 1 cut(s) 23
PstNI CAGNNNCTG 1 cut(s) 959
PsuI RGATCY 2 cut(s) 744, 760
PsyI GACNNNGTC 1 cut(s) 793
PvuII CAGCTG 1 cut(s) 593
RsaI GTAC 2 cut(s) 649, 1210
RsaNI GTAC 2 cut(s) 648, 1209
RseI CAYNNNNRTG 2 cut(s) 224, 514
SapI GCTCTTC 1 cut(s) 56
SaqAI TTAA 4 cut(s) 554, 738, 1112, 1199
SatI GCNGC 7 cut(s) 153, 178, 531, 570, 591, 954, 1003
Sau3AI GATC 6 cut(s) 23, 216, 634, 744, 760, 1188
Sau96I GGNCC 3 cut(s) 384, 856, 1025
ScaI AGTACT 1 cut(s) 649
ScrFI CCNGG 3 cut(s) 165, 347, 1155
SduI GDGCHC 3 cut(s) 78, 876, 924
SfaNI GCATC 5 cut(s) 515, 897, 1019, 1043, 1126
SfcI CTRYAG 1 cut(s) 19
Sfr274I CTCGAG 1 cut(s) 614
SinI GGWCC 3 cut(s) 384, 856, 1025
SlaI CTCGAG 1 cut(s) 614
SmiMI CAYNNNNRTG 2 cut(s) 224, 514
SmlI CTYRAG 2 cut(s) 614, 1047
SmoI CTYRAG 2 cut(s) 614, 1047
SphI GCATGC 1 cut(s) 847
Sse9I AATT 9 cut(s) 252, 621, 729, 734, 931, 1147, 1200, 1234, 1246
SsiI CCGC 5 cut(s) 152, 155, 504, 570, 833
SspI AATATT 1 cut(s) 333
SspMI CTAG 5 cut(s) 326, 689, 830, 983, 1255
StyD4I CCNGG 3 cut(s) 163, 345, 1153
StyI CCWWGG 1 cut(s) 1174
TaaI ACNGT 5 cut(s) 91, 235, 310, 359, 961
TaiI ACGT 1 cut(s) 144
TaqI TCGA 2 cut(s) 26, 615
TaqII GACCGA 2 cut(s) 844, 1042
TasI AATT 9 cut(s) 252, 621, 729, 734, 931, 1147, 1200, 1234, 1246
TatI WGTACW 2 cut(s) 647, 1208
TauI GCSGC 2 cut(s) 155, 572
TfiI GAWTC 2 cut(s) 244, 696
Tru1I TTAA 4 cut(s) 554, 738, 1112, 1199
Tru9I TTAA 4 cut(s) 554, 738, 1112, 1199
TscAI CASTG 3 cut(s) 418, 933, 946
TseFI GTSAC 4 cut(s) 85, 142, 795, 1241
TseI GCWGC 5 cut(s) 177, 530, 590, 953, 1002
Tsp45I GTSAC 4 cut(s) 85, 142, 795, 1241
TspDTI ATGAA 2 cut(s) 62, 257
TspRI CASTG 3 cut(s) 418, 933, 946
Tth111I GACNNNGTC 1 cut(s) 793
Van91I CCANNNNNTGG 1 cut(s) 755
VpaK11BI GGWCC 3 cut(s) 384, 856, 1025
XapI RAATTY 1 cut(s) 734
XceI RCATGY 2 cut(s) 405, 847
XcmI CCANNNNNNNNNTGG 1 cut(s) 118
XhoI CTCGAG 1 cut(s) 614
XspI CTAG 5 cut(s) 326, 689, 830, 983, 1255
ZraI GACGTC 1 cut(s) 142
ZrmI AGTACT 1 cut(s) 649
Zsp2I ATGCAT 1 cut(s) 1058
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.