Rw6G020180

Hippocampus abundant

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0001419
Physical Location & Seq
Forward (+)
40461575 .. 40462632
1058 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G020180.1

Sequence Viewer

Length: 378 bp
ATGCAAGCTTCGGTCCTGTATTTCCTTAAGGCTCGTTTTCAGTTCGACAAAAATCAGTTTGCTGATATAATGCTGATTATGGGGATATCAGGAGCCATAACACAGATGATTTTCATGCCCATGATGGCACCTAAAATCGGAGAGGAAAGGATGCTGTCAATTGGGCTCTCACTGAACTGTATCAGTATGTTTCTAAACAGTATAGCGTGGTCACCTTGGGTTCCTTATGCAGCTACTGTGTTTTCTTCTTTTGCCTTACTAGCACAACCAACTATACGCAGCATTGCATCAAAACAAGTTGGACCAAATGAGCAGGGAAAGGCTCAAGGATGCATTTCAGGCATAAGTTCCTTTGCCAACATTGTGTTGCTCCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1

Protein Analysis

125

Amino Acids

13.7

Weight (kDa)

9.14

Isoelectric Point (pI)

28.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 5 - 122 4e-09 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 127
AfiI CCNNNNNNNGG 1 cut(s) 137
AflII CTTAAG 1 cut(s) 26
AluBI AGCT 2 cut(s) 8, 233
AluI AGCT 2 cut(s) 8, 233
AlwNI CAGNNNCTG 1 cut(s) 236
ApeKI GCWGC 2 cut(s) 230, 279
AspS9I GGNCC 2 cut(s) 13, 302
AsuHPI GGTGA 1 cut(s) 204
AvaII GGWCC 2 cut(s) 13, 302
BanI GGYRCC 1 cut(s) 127
BanII GRGCYC 1 cut(s) 168
BbvI GCAGC 2 cut(s) 242, 291
BccI CCATC 1 cut(s) 118
BfaI CTAG 1 cut(s) 260
BfrI CTTAAG 1 cut(s) 26
BisI GCNGC 2 cut(s) 231, 280
BlsI GCNGC 2 cut(s) 232, 281
Bme18I GGWCC 2 cut(s) 13, 302
BmgT120I GGNCC 2 cut(s) 13, 302
BmiI GGNNCC 3 cut(s) 94, 129, 222
BmsI GCATC 3 cut(s) 141, 296, 320
BpuEI CTTGAG 1 cut(s) 309
BsaJI CCNNGG 1 cut(s) 215
Bsc4I CCNNNNNNNGG 1 cut(s) 137
Bse3DI GCAATG 1 cut(s) 282
BseDI CCNNGG 1 cut(s) 215
BseGI GGATG 2 cut(s) 156, 335
BseLI CCNNNNNNNGG 1 cut(s) 137
BseMI GCAATG 1 cut(s) 282
BseXI GCAGC 2 cut(s) 242, 291
BshNI GGYRCC 1 cut(s) 127
BslI CCNNNNNNNGG 1 cut(s) 137
Bsp1286I GDGCHC 1 cut(s) 168
BspLI GGNNCC 3 cut(s) 94, 129, 222
BspT107I GGYRCC 1 cut(s) 127
BspTI CTTAAG 1 cut(s) 26
BsrDI GCAATG 1 cut(s) 282
BssECI CCNNGG 1 cut(s) 215
BssT1I CCWWGG 1 cut(s) 215
Bst4CI ACNGT 3 cut(s) 179, 200, 238
BstAFI CTTAAG 1 cut(s) 26
BstC8I GCNNGC 1 cut(s) 6
BstEII GGTNACC 1 cut(s) 210
BstF5I GGATG 2 cut(s) 156, 335
BstMWI GCNNNNNNNGC 2 cut(s) 260, 339
BstPI GGTNACC 1 cut(s) 210
BstV1I GCAGC 2 cut(s) 242, 291
BtsCI GGATG 2 cut(s) 156, 335
BtsIMutI CAGTG 1 cut(s) 170
Cac8I GCNNGC 1 cut(s) 6
CaiI CAGNNNCTG 1 cut(s) 236
Cfr13I GGNCC 2 cut(s) 13, 302
CviAII CATG 2 cut(s) 115, 121
CviJI RGCY 6 cut(s) 8, 32, 95, 166, 233, 323
CviKI_1 RGCY 6 cut(s) 8, 32, 95, 166, 233, 323
Eco130I CCWWGG 1 cut(s) 215
Eco24I GRGCYC 1 cut(s) 168
Eco32I GATATC 1 cut(s) 87
Eco47I GGWCC 2 cut(s) 13, 302
Eco91I GGTNACC 1 cut(s) 210
EcoO65I GGTNACC 1 cut(s) 210
EcoRV GATATC 1 cut(s) 87
EcoT14I CCWWGG 1 cut(s) 215
EcoT22I ATGCAT 1 cut(s) 335
EcoT38I GRGCYC 1 cut(s) 168
ErhI CCWWGG 1 cut(s) 215
FaeI CATG 2 cut(s) 118, 124
FatI CATG 2 cut(s) 114, 120
Fnu4HI GCNGC 2 cut(s) 231, 280
FokI GGATG 2 cut(s) 163, 342
FriOI GRGCYC 1 cut(s) 168
Fsp4HI GCNGC 2 cut(s) 231, 280
FspBI CTAG 1 cut(s) 260
GluI GCNGC 2 cut(s) 231, 280
Hin1II CATG 2 cut(s) 118, 124
HindIII AAGCTT 1 cut(s) 6
HphI GGTGA 1 cut(s) 204
Hpy188I TCNGA 1 cut(s) 140
Hpy188III TCNNGA 1 cut(s) 90
HpyCH4III ACNGT 3 cut(s) 179, 200, 238
HpyCH4V TGCA 4 cut(s) 4, 230, 287, 333
HpyF10VI GCNNNNNNNGC 2 cut(s) 260, 339
Hsp92II CATG 2 cut(s) 118, 124
LmnI GCTCC 2 cut(s) 92, 375
LpnPI CCDG 4 cut(s) 29, 75, 299, 324
Lsp1109I GCAGC 2 cut(s) 242, 291
LweI GCATC 3 cut(s) 141, 296, 320
MaeI CTAG 1 cut(s) 260
MaeIII GTNAC 1 cut(s) 210
MboII GAAGA 1 cut(s) 237
MfeI CAATTG 1 cut(s) 159
MhlI GDGCHC 1 cut(s) 168
MluCI AATT 1 cut(s) 159
MmeI TCCRAC 1 cut(s) 280
MnlI CCTC 1 cut(s) 136
Mph1103I ATGCAT 1 cut(s) 335
MseI TTAA 1 cut(s) 27
MslI CAYNNNNRTG 1 cut(s) 119
MspCI CTTAAG 1 cut(s) 26
MunI CAATTG 1 cut(s) 159
MwoI GCNNNNNNNGC 2 cut(s) 260, 339
NlaIII CATG 2 cut(s) 118, 124
NlaIV GGNNCC 3 cut(s) 94, 129, 222
NmuCI GTSAC 1 cut(s) 210
NsiI ATGCAT 1 cut(s) 335
PkrI GCNGC 2 cut(s) 232, 281
PspEI GGTNACC 1 cut(s) 210
PspN4I GGNNCC 3 cut(s) 94, 129, 222
PspPI GGNCC 2 cut(s) 13, 302
PstNI CAGNNNCTG 1 cut(s) 236
RseI CAYNNNNRTG 1 cut(s) 119
SaqAI TTAA 1 cut(s) 27
SatI GCNGC 2 cut(s) 231, 280
Sau96I GGNCC 2 cut(s) 13, 302
SduI GDGCHC 1 cut(s) 168
SetI ASST 4 cut(s) 10, 133, 217, 235
SfaNI GCATC 3 cut(s) 141, 296, 320
SinI GGWCC 2 cut(s) 13, 302
SmiMI CAYNNNNRTG 1 cut(s) 119
SmlI CTYRAG 2 cut(s) 26, 324
SmoI CTYRAG 2 cut(s) 26, 324
Sse9I AATT 1 cut(s) 159
SspMI CTAG 1 cut(s) 260
StyI CCWWGG 1 cut(s) 215
TaaI ACNGT 3 cut(s) 179, 200, 238
TaqI TCGA 1 cut(s) 45
TasI AATT 1 cut(s) 159
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TscAI CASTG 1 cut(s) 177
TseFI GTSAC 1 cut(s) 210
TseI GCWGC 2 cut(s) 230, 279
Tsp45I GTSAC 1 cut(s) 210
TspDTI ATGAA 1 cut(s) 103
TspRI CASTG 1 cut(s) 177
Vha464I CTTAAG 1 cut(s) 26
VpaK11BI GGWCC 2 cut(s) 13, 302
XspI CTAG 1 cut(s) 260
Zsp2I ATGCAT 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.