Rmu_sc0002080.1_g000013

Hippocampus abundant

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002080.1
OG0001419
Physical Location & Seq
Reverse (-)
46929 .. 48696
1768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002080.1_g000013.1.cds

Sequence Viewer

Length: 303 bp
atgaaagggatggagaagagcgagttgaggcaccttttcgtgacggtgttcctctcttcgctttccatgttcttggtgattccgaccataaccgacgtcaccatagcggcggtttgccccggtcgggaaagctgctctcttgccatttacctctctgggtttcaacaagcgatcataggcatgggaacggtggtgatgaatccggtaattgggaacctgtcggacctctatgggaggaaggctctactcacattcccattgacagtatccattatcccactaggtacgtttttgcttgcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1

Protein Analysis

100

Amino Acids

10.75

Weight (kDa)

7.81

Isoelectric Point (pI)

26.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 99
AccB1I GGYRCC 1 cut(s) 30
AciI CCGC 2 cut(s) 107, 110
AcyI GRCGYC 1 cut(s) 96
AfaI GTAC 1 cut(s) 286
AfiI CCNNNNNNNGG 2 cut(s) 124, 209
AgsI TTSAA 1 cut(s) 164
AluBI AGCT 1 cut(s) 132
AluI AGCT 1 cut(s) 132
ApeKI GCWGC 1 cut(s) 132
AspS9I GGNCC 1 cut(s) 223
AsuC2I CCSGG 1 cut(s) 120
AsuHPI GGTGA 3 cut(s) 88, 91, 205
AvaII GGWCC 1 cut(s) 223
BanI GGYRCC 1 cut(s) 30
BbvI GCAGC 1 cut(s) 119
BccI CCATC 1 cut(s) 4
BciVI GTATCC 1 cut(s) 277
BcnI CCSGG 1 cut(s) 120
BfaI CTAG 1 cut(s) 281
BfuI GTATCC 1 cut(s) 277
BisI GCNGC 2 cut(s) 108, 133
BlsI GCNGC 2 cut(s) 109, 134
Bme1390I CCNGG 1 cut(s) 120
Bme18I GGWCC 1 cut(s) 223
BmgT120I GGNCC 1 cut(s) 223
BmiI GGNNCC 2 cut(s) 32, 215
BmrFI CCNGG 1 cut(s) 120
BplI GAGNNNNNCTC 2 cut(s) 226, 258
BpuMI CCSGG 1 cut(s) 120
BsaHI GRCGYC 1 cut(s) 96
BsaJI CCNNGG 1 cut(s) 118
BsaWI WCCGGW 1 cut(s) 202
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 209
BseDI CCNNGG 1 cut(s) 118
BseGI GGATG 1 cut(s) 15
BseLI CCNNNNNNNGG 2 cut(s) 124, 209
BseXI GCAGC 1 cut(s) 119
Bsh1285I CGRYCG 1 cut(s) 124
BshNI GGYRCC 1 cut(s) 30
BsiEI CGRYCG 1 cut(s) 124
BsiSI CCGG 2 cut(s) 120, 203
BslI CCNNNNNNNGG 2 cut(s) 124, 209
Bsp143I GATC 1 cut(s) 171
BspACI CCGC 2 cut(s) 107, 110
BspLI GGNNCC 2 cut(s) 32, 215
BspQI GCTCTTC 1 cut(s) 11
BspT107I GGYRCC 1 cut(s) 30
BssECI CCNNGG 1 cut(s) 118
BssMI GATC 1 cut(s) 171
BssNI GRCGYC 1 cut(s) 96
Bst4CI ACNGT 3 cut(s) 46, 190, 265
Bst6I CTCTTC 2 cut(s) 11, 61
BstACI GRCGYC 1 cut(s) 96
BstC8I GCNNGC 1 cut(s) 297
BstF5I GGATG 1 cut(s) 15
BstKTI GATC 1 cut(s) 174
BstMBI GATC 1 cut(s) 171
BstMCI CGRYCG 1 cut(s) 124
BstSCI CCNGG 1 cut(s) 118
BstV1I GCAGC 1 cut(s) 119
BstXI CCANNNNNNTGG 1 cut(s) 73
BsuI GTATCC 1 cut(s) 277
BtsCI GGATG 1 cut(s) 15
Cac8I GCNNGC 1 cut(s) 297
Cfr13I GGNCC 1 cut(s) 223
Csp6I GTAC 1 cut(s) 285
CviAII CATG 2 cut(s) 67, 181
CviJI RGCY 2 cut(s) 132, 242
CviKI_1 RGCY 2 cut(s) 132, 242
CviQI GTAC 1 cut(s) 285
DpnI GATC 1 cut(s) 173
DpnII GATC 1 cut(s) 171
Eam1104I CTCTTC 2 cut(s) 11, 61
EarI CTCTTC 2 cut(s) 11, 61
Eco47I GGWCC 1 cut(s) 223
FaeI CATG 2 cut(s) 70, 184
FaiI YATR 6 cut(s) 68, 89, 104, 176, 182, 231
FatI CATG 2 cut(s) 66, 180
Fnu4HI GCNGC 2 cut(s) 108, 133
FokI GGATG 1 cut(s) 22
Fsp4HI GCNGC 2 cut(s) 108, 133
FspBI CTAG 1 cut(s) 281
GluI GCNGC 2 cut(s) 108, 133
HapII CCGG 2 cut(s) 120, 203
Hin1I GRCGYC 1 cut(s) 96
Hin1II CATG 2 cut(s) 70, 184
HinfI GANTC 2 cut(s) 79, 199
HpaII CCGG 2 cut(s) 120, 203
HphI GGTGA 3 cut(s) 88, 91, 205
Hpy188I TCNGA 2 cut(s) 84, 223
Hpy188III TCNNGA 2 cut(s) 40, 125
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 1 cut(s) 232
HpyCH4III ACNGT 3 cut(s) 46, 190, 265
HpyCH4IV ACGT 2 cut(s) 96, 287
HpySE526I ACGT 2 cut(s) 96, 287
Hsp92I GRCGYC 1 cut(s) 96
Hsp92II CATG 2 cut(s) 70, 184
Kzo9I GATC 1 cut(s) 171
LguI GCTCTTC 1 cut(s) 11
LpnPI CCDG 4 cut(s) 133, 141, 216, 230
Lsp1109I GCAGC 1 cut(s) 119
MaeI CTAG 1 cut(s) 281
MaeII ACGT 2 cut(s) 96, 287
MaeIII GTNAC 2 cut(s) 40, 97
MalI GATC 1 cut(s) 173
MboI GATC 1 cut(s) 171
MboII GAAGA 2 cut(s) 28, 48
MluCI AATT 1 cut(s) 207
MmeI TCCRAC 2 cut(s) 107, 201
MnlI CCTC 5 cut(s) 21, 62, 161, 228, 236
MslI CAYNNNNRTG 1 cut(s) 179
MspI CCGG 2 cut(s) 120, 203
MspR9I CCNGG 1 cut(s) 120
NciI CCSGG 1 cut(s) 120
NdeII GATC 1 cut(s) 171
NlaIII CATG 2 cut(s) 70, 184
NlaIV GGNNCC 2 cut(s) 32, 215
NmuCI GTSAC 2 cut(s) 40, 97
PciSI GCTCTTC 1 cut(s) 11
PfeI GAWTC 2 cut(s) 79, 199
PkrI GCNGC 2 cut(s) 109, 134
PspN4I GGNNCC 2 cut(s) 32, 215
PspPI GGNCC 1 cut(s) 223
RsaI GTAC 1 cut(s) 286
RsaNI GTAC 1 cut(s) 285
RseI CAYNNNNRTG 1 cut(s) 179
SapI GCTCTTC 1 cut(s) 11
SatI GCNGC 2 cut(s) 108, 133
Sau3AI GATC 1 cut(s) 171
Sau96I GGNCC 1 cut(s) 223
ScrFI CCNGG 1 cut(s) 120
SetI ASST 8 cut(s) 36, 99, 134, 153, 219, 228, 286, 290
SinI GGWCC 1 cut(s) 223
SmiMI CAYNNNNRTG 1 cut(s) 179
Sse9I AATT 1 cut(s) 207
SsiI CCGC 2 cut(s) 107, 110
SspMI CTAG 1 cut(s) 281
StyD4I CCNGG 1 cut(s) 118
TaaI ACNGT 3 cut(s) 46, 190, 265
TaiI ACGT 2 cut(s) 99, 290
TasI AATT 1 cut(s) 207
TauI GCSGC 1 cut(s) 110
TfiI GAWTC 2 cut(s) 79, 199
TseFI GTSAC 2 cut(s) 40, 97
TseI GCWGC 1 cut(s) 132
Tsp45I GTSAC 2 cut(s) 40, 97
TspDTI ATGAA 2 cut(s) 17, 212
VpaK11BI GGWCC 1 cut(s) 223
XspI CTAG 1 cut(s) 281
ZraI GACGTC 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.