Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001419

Physical Location & Seq

Genomic Coordinates Forward (+)

24953082 .. 24959562

Gene Structure 6481 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1126300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGGAGGGCATTGGAGGATTGAGGCATCTGTTTATGACAGTGTTTTTGACTGCGTTTGCAAACTTCGCGGTGGTTCCAGCCATAACTGATATCACCGTGCTGGCTCTTTGCCCTGGTCGAGATGAGTGCTCCCTTGCCATTTACCTCTCTGGTTTTCAACAAGCGATCATAGGAGTGGGAACGGTGGTGATGACTCCAGTAATTGGGAATCTGTCGGATGTGTACGGGAGGAAGTCGCTTCTCACGATCCCAATGATACTATCCATTATTCCACTAGTGATAATGGCGTATAGCAGGGAGACAAGCTTCTTTTATGCCTACTATGTGCTGAGGACAGTAACTGCCATGGTAGGCGAAGCCAGCATCACCTGCCTCGCTCTTGCTTATGTGGCCGACAATGTTGCAGAGAGAGAACGAATATCTGCATTTGCAATTCTTGCTGGTATTACTTCAGCAGCAATTGTATGTGGAACCTTAGCAGCTCGTTTCCTCTCCGCTGCTTCAACATTTCAGGTTGCTGCCTTTGCATCAATACTGTCAACTGTCTACATGGGAATTTTTCTCAAGGAGAGCTTGCCGGGCGGCGATAGTACTTTGAGGCAGCCTATCTTGAAAGGAGGAGTATCAGAAGTTGCTGATGAAGGTGATGTCTACTCACCGAAGACGACACAAGTATTTAAGAAAATTCCATCTCCAGGAGAGTTGATTTCCCTACTAAGGAGTAGTAAGATTCTGTCACAAGCAGCAGTTGTTTCCTTCTTTCAGAGCCTGGCAGAGGGTGGCATGCAAGCTTCATTATTGTATTTCTTAAAGGCTCGTTTCCACTTCAACAAGAATCAGTTTGCTGATCTAATGCTGATTTTTTCGGTATCAGGGGCTACATCACAGTTGCTTTTCATGCCTATGTTGGCACCTGCTATAGGAGAGGAAAAGTTGCTTACAATTGGGCTCCTAATGGGCAGTATATGTATGTTTCTTAACAGCATTTCATGGGCAGTTTGGGTTCCTTATGCTGCGACTCTGTTTAATGTTTTCGGATATTTAGTGCAGCCAAGCATACGCAGCATTGTATCAAAACAAGTTGGACCCCATGATCAGGGAAAGGCTCAAGGATGCATTTTAGGCATAAGCTCCTTTGCCAACATTGTTTCTCCATTACTTTTTAGTCCTCTAACAGCTTTATTCCTGTCTGAAGAAGCTCCATTTAATTTCCCTGGCTTCAGTATTATGTGCATGGGCCTAGCACCGATGATTGGCTTCGTTCAGAGCCTAATGATTAAGGCTTCTCCTAAAAAACCCAGCAGCAACGTCTGCGTTGAATCTCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

443

Amino Acids

47.27

Weight (kDa)

8.05

Isoelectric Point (pI)

39.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	10 - 385	7.6e-26	Major Facilitator Superfamily
MFS_1	PF07690	250 - 414	3.7e-08	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16970 AT2G16970 AT2G16970 AT2G16970 AT2G16970 AT2G16970 AT2G16970 AT2G16970 AT2G16980 AT2G16980 AT2G16980 AT2G16980 AT2G16980 AT2G16980 AT2G16990 AT2G16990 AT2G16990 AT2G16990 AT2G16990 AT2G16990 AT2G16990 AT2G16990
fragaria_vesca	FvH4_2g15722 FvH4_2g15730 FvH4_2g15730 FvH4_2g15730 FvH4_2g15730 FvH4_2g15730
malus_domestica	MD05G1126300.v1.1 MD10G1129100.v1.1
prunus_persica	Prupe.8G169700_v2.0.a1 Prupe.8G169700_v2.0.a1 Prupe.8G169700_v2.0.a1
pyrus_communis	pycom05g12210 pycom10g11070
rosa_chinensis	RchiOBHm_Chr6g0279031 RchiOBHm_Chr6g0279041
rosa_laevigata	RLG00000013171
rosa_multiflora	Rmu_sc0002080.1_g000008 Rmu_sc0002080.1_g000013
rosa_roxburghii	Rroxscaffold_7G00189190
rosa_rugosa	Rorug06G0121300 Rorug06G0121400.1 Rorug06G0121500 Rorug06G0121600
rosa_samantha	Rh6AG230600 Rh6BG235400 Rh6CG237400 Rh6DG229200
rosa_wichuraiana	Rw0G017030 Rw0G021110 Rw6G020180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	377, 922
Acc36I	ACCTGC	2 cut(s)	377, 922
AccB1I	GGYRCC	1 cut(s)	910
AccB7I	CCANNNNNTGG	1 cut(s)	203
AccI	GTMKAC	2 cut(s)	546, 651
AccII	CGCG	1 cut(s)	68
AciI	CCGC	3 cut(s)	68, 495, 582
AclWI	GGATC	1 cut(s)	241
AcoI	YGGCCR	1 cut(s)	390
AcsI	RAATTY	2 cut(s)	555, 684
AcuI	CTGAAG	3 cut(s)	435, 1204, 1212
AfaI	GTAC	2 cut(s)	224, 592
AfiI	CCNNNNNNNGG	7 cut(s)	203, 695, 717, 775, 920, 1096, 1253
AgsI	TTSAA	5 cut(s)	158, 504, 613, 829, 1319
AhlI	ACTAGT	1 cut(s)	274
AjnI	CCWGG	4 cut(s)	112, 694, 768, 1213
AluBI	AGCT	7 cut(s)	306, 482, 573, 791, 1131, 1178, 1199
AluI	AGCT	7 cut(s)	306, 482, 573, 791, 1131, 1178, 1199
Alw21I	GWGCWC	1 cut(s)	131
Alw26I	GTCTC	1 cut(s)	293
AlwI	GGATC	1 cut(s)	241
AlwNI	CAGNNNCTG	2 cut(s)	341, 769
AoxI	GGCC	2 cut(s)	390, 1237
ApoI	RAATTY	2 cut(s)	555, 684
ArsI	GACNNNNNNTTYG	2 cut(s)	28, 60
AspS9I	GGNCC	2 cut(s)	1085, 1237
AsuC2I	CCSGG	1 cut(s)	579
AsuHPI	GGTGA	5 cut(s)	85, 199, 358, 648, 656
AvaII	GGWCC	1 cut(s)	1085
BanI	GGYRCC	1 cut(s)	910
BanII	GRGCYC	1 cut(s)	951
BbsI	GAAGAC	1 cut(s)	668
Bbv12I	GWGCWC	1 cut(s)	131
BbvCI	CCTCAGC	1 cut(s)	329
BccI	CCATC	1 cut(s)	697
BcgI	CGANNNNNNTGC	4 cut(s)	108, 142, 383, 417
BciT130I	CCWGG	4 cut(s)	114, 696, 770, 1215
BclI	TGATCA	1 cut(s)	1093
BcnI	CCSGG	1 cut(s)	579
BcoDI	GTCTC	1 cut(s)	293
BcuI	ACTAGT	1 cut(s)	274
BfaI	CTAG	3 cut(s)	275, 1241, 1327
BfmI	CTRYAG	1 cut(s)	918
BfuAI	ACCTGC	2 cut(s)	377, 922
BmcAI	AGTACT	1 cut(s)	592
Bme1390I	CCNGG	5 cut(s)	114, 579, 696, 770, 1215
Bme18I	GGWCC	1 cut(s)	1085
BmgT120I	GGNCC	2 cut(s)	1085, 1237
BmiI	GGNNCC	6 cut(s)	75, 472, 912, 950, 1005, 1087
BmrFI	CCNGG	5 cut(s)	114, 579, 696, 770, 1215
BmsI	GCATC	4 cut(s)	34, 372, 536, 1103
BpiI	GAAGAC	1 cut(s)	668
BpmI	CTGGAG	2 cut(s)	180, 678
Bpu10I	CCTNAGC	2 cut(s)	329, 475
BpuEI	CTTGAG	2 cut(s)	548, 1092
BpuMI	CCSGG	1 cut(s)	579
BsaJI	CCNNGG	3 cut(s)	112, 345, 1213
Bsc4I	CCNNNNNNNGG	7 cut(s)	203, 695, 717, 775, 920, 1096, 1253
Bse1I	ACTGG	1 cut(s)	197
BseBI	CCWGG	4 cut(s)	114, 696, 770, 1215
BseDI	CCNNGG	3 cut(s)	112, 345, 1213
BseGI	GGATG	2 cut(s)	223, 1118
BseLI	CCNNNNNNNGG	7 cut(s)	203, 695, 717, 775, 920, 1096, 1253
BseMII	CTCAG	1 cut(s)	320
BseNI	ACTGG	1 cut(s)	197
BseRI	GAGGAG	1 cut(s)	633
BseYI	CCCAGC	1 cut(s)	1298
BsgI	GTGCAG	1 cut(s)	1067
Bsh1236I	CGCG	1 cut(s)	68
BshFI	GGCC	2 cut(s)	392, 1239
BshNI	GGYRCC	1 cut(s)	910
BsiHKAI	GWGCWC	1 cut(s)	131
BsiSI	CCGG	1 cut(s)	578
BslI	CCNNNNNNNGG	7 cut(s)	203, 695, 717, 775, 920, 1096, 1253
BsmAI	GTCTC	1 cut(s)	293
BsnI	GGCC	2 cut(s)	392, 1239
Bsp1286I	GDGCHC	2 cut(s)	131, 951
Bsp143I	GATC	4 cut(s)	165, 246, 847, 1093
Bsp19I	CCATGG	1 cut(s)	345
BspACI	CCGC	3 cut(s)	68, 495, 582
BspANI	GGCC	2 cut(s)	392, 1239
BspCNI	CTCAG	1 cut(s)	321
BspFNI	CGCG	1 cut(s)	68
BspLI	GGNNCC	6 cut(s)	75, 472, 912, 950, 1005, 1087
BspMI	ACCTGC	2 cut(s)	377, 922
BspPI	GGATC	1 cut(s)	241
BspT107I	GGYRCC	1 cut(s)	910
BsrI	ACTGG	1 cut(s)	197
BssECI	CCNNGG	3 cut(s)	112, 345, 1213
BssMI	GATC	4 cut(s)	165, 246, 847, 1093
BssT1I	CCWWGG	1 cut(s)	345
Bst2UI	CCWGG	4 cut(s)	114, 696, 770, 1215
Bst4CI	ACNGT	7 cut(s)	40, 97, 184, 337, 537, 544, 888
BstAPI	GCANNNNNTGC	3 cut(s)	369, 437, 1311
BstC8I	GCNNGC	5 cut(s)	102, 361, 575, 785, 789
BstDEI	CTNAG	3 cut(s)	329, 475, 716
BstDSI	CCRYGG	1 cut(s)	345
BstENI	CCTNNNNNAGG	2 cut(s)	773, 918
BstF5I	GGATG	2 cut(s)	223, 1118
BstFNI	CGCG	1 cut(s)	68
BstKTI	GATC	4 cut(s)	168, 249, 850, 1096
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	4 cut(s)	165, 246, 847, 1093
BstNI	CCWGG	4 cut(s)	114, 696, 770, 1215
BstNSI	RCATGY	1 cut(s)	787
BstSCI	CCNGG	5 cut(s)	112, 577, 694, 768, 1213
BstSFI	CTRYAG	1 cut(s)	918
BstUI	CGCG	1 cut(s)	68
BstV2I	GAAGAC	1 cut(s)	668
BsuRI	GGCC	2 cut(s)	392, 1239
BtgI	CCRYGG	1 cut(s)	345
BtsCI	GGATG	2 cut(s)	223, 1118
BtsIMutI	CAGTG	1 cut(s)	45
BveI	ACCTGC	2 cut(s)	377, 922
Cac8I	GCNNGC	5 cut(s)	102, 361, 575, 785, 789
CaiI	CAGNNNCTG	2 cut(s)	341, 769
Cfr13I	GGNCC	2 cut(s)	1085, 1237
Csp6I	GTAC	2 cut(s)	223, 591
CviAII	CATG	7 cut(s)	346, 550, 784, 898, 990, 1091, 1234
CviQI	GTAC	2 cut(s)	223, 591
DdeI	CTNAG	3 cut(s)	329, 475, 716
DpnI	GATC	4 cut(s)	167, 248, 849, 1095
DpnII	GATC	4 cut(s)	165, 246, 847, 1093
EaeI	YGGCCR	1 cut(s)	390
Eco130I	CCWWGG	1 cut(s)	345
Eco24I	GRGCYC	1 cut(s)	951
Eco32I	GATATC	1 cut(s)	91
Eco47I	GGWCC	1 cut(s)	1085
Eco57I	CTGAAG	3 cut(s)	435, 1204, 1212
EcoNI	CCTNNNNNAGG	2 cut(s)	773, 918
EcoRII	CCWGG	4 cut(s)	112, 694, 768, 1213
EcoRV	GATATC	1 cut(s)	91
EcoT14I	CCWWGG	1 cut(s)	345
EcoT22I	ATGCAT	1 cut(s)	1118
EcoT38I	GRGCYC	1 cut(s)	951
ErhI	CCWWGG	1 cut(s)	345
FaeI	CATG	7 cut(s)	349, 553, 787, 901, 993, 1094, 1237
FalI	AAGNNNNNCTT	2 cut(s)	557, 589
FatI	CATG	7 cut(s)	345, 549, 783, 897, 989, 1090, 1233
FbaI	TGATCA	1 cut(s)	1093
FblI	GTMKAC	2 cut(s)	546, 651
FokI	GGATG	2 cut(s)	230, 1125
FriOI	GRGCYC	1 cut(s)	951
FspBI	CTAG	3 cut(s)	275, 1241, 1327
GsaI	CCCAGC	1 cut(s)	1302
GsuI	CTGGAG	2 cut(s)	180, 678
HaeIII	GGCC	2 cut(s)	392, 1239
HapII	CCGG	1 cut(s)	578
Hin1II	CATG	7 cut(s)	349, 553, 787, 901, 993, 1094, 1237
HincII	GTYRAC	1 cut(s)	540
HindII	GTYRAC	1 cut(s)	540
HindIII	AAGCTT	2 cut(s)	304, 789
HinfI	GANTC	6 cut(s)	193, 208, 730, 835, 1018, 1319
HpaII	CCGG	1 cut(s)	578
HphI	GGTGA	5 cut(s)	85, 199, 358, 648, 656
Hpy166II	GTNNAC	4 cut(s)	223, 540, 547, 652
Hpy188I	TCNGA	6 cut(s)	217, 628, 765, 1037, 1192, 1266
Hpy188III	TCNNGA	3 cut(s)	119, 244, 610
Hpy8I	GTNNAC	4 cut(s)	223, 540, 547, 652
HpyAV	CCTTC	2 cut(s)	635, 766
HpyCH4III	ACNGT	7 cut(s)	40, 97, 184, 337, 537, 544, 888
HpyCH4IV	ACGT	1 cut(s)	1308
HpyCH4V	TGCA	9 cut(s)	59, 404, 425, 431, 527, 787, 1048, 1116, 1233
HpyF3I	CTNAG	3 cut(s)	329, 475, 716
HpySE526I	ACGT	1 cut(s)	1308
Hsp92II	CATG	7 cut(s)	349, 553, 787, 901, 993, 1094, 1237
Ksp22I	TGATCA	1 cut(s)	1093
Kzo9I	GATC	4 cut(s)	165, 246, 847, 1093
LmnI	GCTCC	4 cut(s)	134, 954, 1136, 1204
LweI	GCATC	4 cut(s)	34, 372, 536, 1103
MaeI	CTAG	3 cut(s)	275, 1241, 1327
MaeII	ACGT	1 cut(s)	1308
MaeIII	GTNAC	2 cut(s)	337, 735
MalI	GATC	4 cut(s)	167, 248, 849, 1095
MboI	GATC	4 cut(s)	165, 246, 847, 1093
MboII	GAAGA	2 cut(s)	673, 1205
MfeI	CAATTG	2 cut(s)	459, 942
MhlI	GDGCHC	2 cut(s)	131, 951
MluCI	AATT	7 cut(s)	201, 432, 459, 555, 684, 942, 1207
MlyI	GAGTC	2 cut(s)	187, 1012
MmeI	TCCRAC	2 cut(s)	195, 1063
Mph1103I	ATGCAT	1 cut(s)	1118
MseI	TTAA	6 cut(s)	678, 809, 978, 1026, 1206, 1278
MslI	CAYNNNNRTG	2 cut(s)	173, 902
MspA1I	CMGCKG	1 cut(s)	497
MspI	CCGG	1 cut(s)	578
MspR9I	CCNGG	5 cut(s)	114, 579, 696, 770, 1215
MunI	CAATTG	2 cut(s)	459, 942
MvaI	CCWGG	4 cut(s)	114, 696, 770, 1215
MvnI	CGCG	1 cut(s)	68
NciI	CCSGG	1 cut(s)	579
NcoI	CCATGG	1 cut(s)	345
NdeII	GATC	4 cut(s)	165, 246, 847, 1093
NlaIII	CATG	7 cut(s)	349, 553, 787, 901, 993, 1094, 1237
NlaIV	GGNNCC	6 cut(s)	75, 472, 912, 950, 1005, 1087
NmuCI	GTSAC	1 cut(s)	735
NsiI	ATGCAT	1 cut(s)	1118
NspI	RCATGY	1 cut(s)	787
PaeI	GCATGC	1 cut(s)	787
PaqCI	CACCTGC	2 cut(s)	377, 922
PcsI	WCGNNNNNNNCGW	1 cut(s)	242
PfeI	GAWTC	4 cut(s)	208, 730, 835, 1319
PflMI	CCANNNNNTGG	1 cut(s)	203
PfoI	TCCNGGA	1 cut(s)	694
PleI	GAGTC	2 cut(s)	187, 1012
PpsI	GAGTC	2 cut(s)	187, 1012
Psp6I	CCWGG	4 cut(s)	112, 694, 768, 1213
PspFI	CCCAGC	1 cut(s)	1298
PspGI	CCWGG	4 cut(s)	112, 694, 768, 1213
PspN4I	GGNNCC	6 cut(s)	75, 472, 912, 950, 1005, 1087
PspPI	GGNCC	2 cut(s)	1085, 1237
PstNI	CAGNNNCTG	2 cut(s)	341, 769
RsaI	GTAC	2 cut(s)	224, 592
RsaNI	GTAC	2 cut(s)	223, 591
RseI	CAYNNNNRTG	2 cut(s)	173, 902
SaqAI	TTAA	6 cut(s)	678, 809, 978, 1026, 1206, 1278
Sau3AI	GATC	4 cut(s)	165, 246, 847, 1093
Sau96I	GGNCC	2 cut(s)	1085, 1237
ScaI	AGTACT	1 cut(s)	592
SchI	GAGTC	2 cut(s)	187, 1012
ScrFI	CCNGG	5 cut(s)	114, 579, 696, 770, 1215
SduI	GDGCHC	2 cut(s)	131, 951
SfaNI	GCATC	4 cut(s)	34, 372, 536, 1103
SfcI	CTRYAG	1 cut(s)	918
SinI	GGWCC	1 cut(s)	1085
SmiMI	CAYNNNNRTG	2 cut(s)	173, 902
SmlI	CTYRAG	2 cut(s)	563, 1107
SmoI	CTYRAG	2 cut(s)	563, 1107
SpeI	ACTAGT	1 cut(s)	274
SphI	GCATGC	1 cut(s)	787
Sse9I	AATT	7 cut(s)	201, 432, 459, 555, 684, 942, 1207
SsiI	CCGC	3 cut(s)	68, 495, 582
SspMI	CTAG	3 cut(s)	275, 1241, 1327
StyD4I	CCNGG	5 cut(s)	112, 577, 694, 768, 1213
StyI	CCWWGG	1 cut(s)	345
TaaI	ACNGT	7 cut(s)	40, 97, 184, 337, 537, 544, 888
TaiI	ACGT	1 cut(s)	1311
TaqI	TCGA	1 cut(s)	118
TasI	AATT	7 cut(s)	201, 432, 459, 555, 684, 942, 1207
TatI	WGTACW	1 cut(s)	590
TauI	GCSGC	1 cut(s)	585
TfiI	GAWTC	4 cut(s)	208, 730, 835, 1319
Tru1I	TTAA	6 cut(s)	678, 809, 978, 1026, 1206, 1278
Tru9I	TTAA	6 cut(s)	678, 809, 978, 1026, 1206, 1278
TscAI	CASTG	1 cut(s)	45
TseFI	GTSAC	1 cut(s)	735
Tsp45I	GTSAC	1 cut(s)	735
TspDTI	ATGAA	4 cut(s)	654, 783, 886, 978
TspRI	CASTG	1 cut(s)	45
Van91I	CCANNNNNTGG	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	1085
XagI	CCTNNNNNAGG	2 cut(s)	773, 918
XapI	RAATTY	2 cut(s)	555, 684
XceI	RCATGY	1 cut(s)	787
XmiI	GTMKAC	2 cut(s)	546, 651
XspI	CTAG	3 cut(s)	275, 1241, 1327
ZrmI	AGTACT	1 cut(s)	592
Zsp2I	ATGCAT	1 cut(s)	1118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.