Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001419

Physical Location & Seq

Genomic Coordinates Forward (+)

17447453 .. 17454005

Gene Structure 6553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G169700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGGAGGAGGGTATTGGAGGGTTGAGGCATCTGTATATGACAGTGTTTTTGTCTGGGTTTGCAAGCTTGATGGTAATTCCAGCCATAACTGATATCACCATGTTGGCACTTTGCCCTGGTCAAGATGAGTGCTCTCTTGCCATTTACCTCTCTGGTTTTCAACAAGCGATCATAGGATTGGGGACGGTGGTCATGACTCCGCTAATTGGGAACCTATCGGACGTGTATGGGAGGAAGTCTCTGCTCACAGTCCCATTGGCTCTTTCCATTATTCCACTAGTGATATTGGCGTATAGCAGGGAGACAAACTTTTTTTATGCTTACTTTGCGCTGAGGACAGTGACTGCCATGGTATGCGAAGGCAGCATCAACTGCCTCACTCTTGCTTATGTGGCAGACACTGTTTCTGAGAGAGAAAGAGTACCTGCATTTGGAATTCTAGCTGGTTTTCTTTCAGCATCATTTGTATGTGGAACCTTAGCAGCTCGTTTCCTCTCCACTGCTTCAACATTTCAGGTTGCTGCCTTCGCATCAATGCTGGCAACTATCTACATGAGAGTTTTTCTCAAGGAGAGCTTGCCAGGCAGGGACGGCACTTTGAGGCAGCCTATCTTGAAGGGAGGATCAGATGCCATTGAAGAAGATGGCTACTCACCGGAGACAATAGAAGTGTTTAAGAAGGTTCCTTCTGCAGGGGATTTGATTTGCTTGCTGAGGAGCAGTAAGACCTTGTCACAAGCAGCAATTGTTTCCTTCTTCCAGAGTCTGGCAGAGGGTGGCCTGCAAGCTTCACTAATGTATTTCTTGAAGGCTCGTTTTCACTTCAACAAAAACCAGTTTGCTGATCTGATGTTGATTGTGGGGATATCAGGAACCGTTTCACAGCTGCTTTTCATGCCTATGTTGGCACCTGTTATAGGAGAGGAAAAGTTGCTTTCAATTGGGCTCTTAGTGGGCAGTTTCAATATGTTTCTCAACAGCATATCATGGGCAGTTTGGGTTCCTTATGCCGCTACTCTGTTTTCTGCTTTTGGGTTTTTAGTGCAGCCAAGCATACGCAGCATTGCATCAAAACAAGTTGGGCCCAATGAGCAGGGAAAGGCTCAAGGATGTATTTCAGGCATAAGTTCCTTTGCCAACATTGTTTCCCCTTTAATTTTTAGTCCTCTAACAGCTTTGTTCCTGTCTGAAGAAGCGCCATTTTATTTCCCTGGCTTTAGTATAATGTGCATTGGCCTTGCAATGATAATCGCCTTTGTTCAGAGTACAATGATAAGGGCTTCTCCTATTTCAAGTCACAAAATCAGCAGTATCATATCTGTGGATTCCACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

445

Amino Acids

47.71

Weight (kDa)

5.99

Isoelectric Point (pI)

43.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16970 AT2G16970 AT2G16970 AT2G16970 AT2G16970 AT2G16970 AT2G16970 AT2G16970 AT2G16980 AT2G16980 AT2G16980 AT2G16980 AT2G16980 AT2G16980 AT2G16990 AT2G16990 AT2G16990 AT2G16990 AT2G16990 AT2G16990 AT2G16990 AT2G16990
fragaria_vesca	FvH4_2g15722 FvH4_2g15730 FvH4_2g15730 FvH4_2g15730 FvH4_2g15730 FvH4_2g15730
malus_domestica	MD05G1126300.v1.1 MD10G1129100.v1.1
prunus_persica	Prupe.8G169700_v2.0.a1 Prupe.8G169700_v2.0.a1 Prupe.8G169700_v2.0.a1
pyrus_communis	pycom05g12210 pycom10g11070
rosa_chinensis	RchiOBHm_Chr6g0279031 RchiOBHm_Chr6g0279041
rosa_laevigata	RLG00000013171
rosa_multiflora	Rmu_sc0002080.1_g000008 Rmu_sc0002080.1_g000013
rosa_roxburghii	Rroxscaffold_7G00189190
rosa_rugosa	Rorug06G0121300 Rorug06G0121400.1 Rorug06G0121500 Rorug06G0121600
rosa_samantha	Rh6AG230600 Rh6BG235400 Rh6CG237400 Rh6DG229200
rosa_wichuraiana	Rw0G017030 Rw0G021110 Rw6G020180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	433
AccB1I	GGYRCC	1 cut(s)	907
AccB7I	CCANNNNNTGG	1 cut(s)	766
AciI	CCGC	2 cut(s)	200, 1011
AclWI	GGATC	1 cut(s)	631
AcsI	RAATTY	1 cut(s)	435
AcuI	CTGAAG	1 cut(s)	1209
AfaI	GTAC	2 cut(s)	423, 1267
AfiI	CCNNNNNNNGG	5 cut(s)	206, 431, 692, 766, 917
AflIII	ACRYGT	1 cut(s)	222
AgsI	TTSAA	9 cut(s)	161, 507, 616, 638, 808, 826, 939, 964, 1293
AhlI	ACTAGT	1 cut(s)	277
AjiI	CACGTC	1 cut(s)	223
AjnI	CCWGG	3 cut(s)	115, 580, 1210
AluBI	AGCT	7 cut(s)	66, 443, 485, 576, 788, 886, 1175
AluI	AGCT	7 cut(s)	66, 443, 485, 576, 788, 886, 1175
Alw21I	GWGCWC	1 cut(s)	134
Alw26I	GTCTC	3 cut(s)	243, 296, 653
AlwI	GGATC	1 cut(s)	631
AlwNI	CAGNNNCTG	3 cut(s)	344, 401, 766
AoxI	GGCC	3 cut(s)	778, 1082, 1234
ApaI	GGGCCC	1 cut(s)	1086
ApeKI	GCWGC	8 cut(s)	363, 482, 521, 604, 740, 886, 1045, 1059
ApoI	RAATTY	1 cut(s)	435
ArsI	GACNNNNNNTTYG	2 cut(s)	31, 63
Asp700I	GAANNNNTTC	1 cut(s)	877
AspLEI	GCGC	2 cut(s)	331, 1198
AspS9I	GGNCC	2 cut(s)	1082, 1083
AsuHPI	GGTGA	2 cut(s)	88, 645
BaeGI	GKGCMC	1 cut(s)	1086
BanI	GGYRCC	1 cut(s)	907
BanII	GRGCYC	2 cut(s)	948, 1086
Bbv12I	GWGCWC	1 cut(s)	134
BbvCI	CCTCAGC	2 cut(s)	332, 713
BbvI	GCAGC	8 cut(s)	375, 494, 508, 616, 752, 873, 1057, 1071
BccI	CCATC	2 cut(s)	64, 638
BceAI	ACGGC	1 cut(s)	607
BciT130I	CCWGG	3 cut(s)	117, 582, 1212
BcoDI	GTCTC	3 cut(s)	243, 296, 653
BcuI	ACTAGT	1 cut(s)	277
BfaI	CTAG	2 cut(s)	278, 440
BfmI	CTRYAG	1 cut(s)	690
BfoI	RGCGCY	1 cut(s)	1199
BfuAI	ACCTGC	1 cut(s)	433
BisI	GCNGC	9 cut(s)	364, 483, 522, 605, 741, 887, 1011, 1046, 1060
BlsI	GCNGC	9 cut(s)	365, 484, 523, 606, 742, 888, 1012, 1047, 1061
Bme1390I	CCNGG	3 cut(s)	117, 582, 1212
BmgBI	CACGTC	1 cut(s)	223
BmgT120I	GGNCC	2 cut(s)	1082, 1083
BmiI	GGNNCC	7 cut(s)	212, 475, 684, 874, 909, 1002, 1084
BmrFI	CCNGG	3 cut(s)	117, 582, 1212
BmsI	GCATC	6 cut(s)	37, 375, 467, 539, 619, 1076
BoxI	GACNNNNGTC	1 cut(s)	188
BplI	GAGNNNNNCTC	4 cut(s)	223, 255, 549, 581
Bpu10I	CCTNAGC	3 cut(s)	332, 478, 713
BpuEI	CTTGAG	2 cut(s)	551, 1089
BsaAI	YACGTR	1 cut(s)	1332
BsaJI	CCNNGG	3 cut(s)	115, 348, 1210
BsaWI	WCCGGW	1 cut(s)	655
Bsc4I	CCNNNNNNNGG	5 cut(s)	206, 431, 692, 766, 917
Bse1I	ACTGG	1 cut(s)	835
Bse3DI	GCAATG	2 cut(s)	1062, 1248
BseBI	CCWGG	3 cut(s)	117, 582, 1212
BseDI	CCNNGG	3 cut(s)	115, 348, 1210
BseGI	GGATG	1 cut(s)	1115
BseLI	CCNNNNNNNGG	5 cut(s)	206, 431, 692, 766, 917
BseMI	GCAATG	2 cut(s)	1062, 1248
BseMII	CTCAG	3 cut(s)	323, 399, 704
BseNI	ACTGG	1 cut(s)	835
BseRI	GAGGAG	2 cut(s)	20, 730
BseSI	GKGCMC	1 cut(s)	1086
BseXI	GCAGC	8 cut(s)	375, 494, 508, 616, 752, 873, 1057, 1071
BsgI	GTGCAG	1 cut(s)	1064
BshFI	GGCC	3 cut(s)	780, 1084, 1236
BshNI	GGYRCC	1 cut(s)	907
BsiHKAI	GWGCWC	1 cut(s)	134
BsiSI	CCGG	1 cut(s)	656
BslFI	GGGAC	3 cut(s)	196, 236, 602
BslI	CCNNNNNNNGG	5 cut(s)	206, 431, 692, 766, 917
BsmAI	GTCTC	3 cut(s)	243, 296, 653
BsmFI	GGGAC	3 cut(s)	196, 236, 602
BsnI	GGCC	3 cut(s)	780, 1084, 1236
Bsp120I	GGGCCC	1 cut(s)	1082
Bsp1286I	GDGCHC	3 cut(s)	134, 948, 1086
Bsp143I	GATC	3 cut(s)	168, 623, 844
Bsp19I	CCATGG	1 cut(s)	348
BspACI	CCGC	2 cut(s)	200, 1011
BspANI	GGCC	3 cut(s)	780, 1084, 1236
BspCNI	CTCAG	3 cut(s)	324, 400, 705
BspHI	TCATGA	1 cut(s)	192
BspLI	GGNNCC	7 cut(s)	212, 475, 684, 874, 909, 1002, 1084
BspMAI	CTGCAG	1 cut(s)	694
BspMI	ACCTGC	1 cut(s)	433
BspPI	GGATC	1 cut(s)	631
BspT107I	GGYRCC	1 cut(s)	907
BsrDI	GCAATG	2 cut(s)	1062, 1248
BsrI	ACTGG	1 cut(s)	835
BssECI	CCNNGG	3 cut(s)	115, 348, 1210
BssMI	GATC	3 cut(s)	168, 623, 844
BssT1I	CCWWGG	1 cut(s)	348
Bst2UI	CCWGG	3 cut(s)	117, 582, 1212
Bst4CI	ACNGT	6 cut(s)	43, 187, 250, 340, 403, 877
BstAPI	GCANNNNNTGC	1 cut(s)	372
BstBAI	YACGTR	1 cut(s)	1332
BstC8I	GCNNGC	6 cut(s)	64, 540, 578, 710, 782, 786
BstDEI	CTNAG	5 cut(s)	332, 408, 478, 713, 949
BstDSI	CCRYGG	1 cut(s)	348
BstENI	CCTNNNNNAGG	2 cut(s)	690, 915
BstF5I	GGATG	1 cut(s)	1115
BstH2I	RGCGCY	1 cut(s)	1199
BstHHI	GCGC	2 cut(s)	331, 1198
BstKTI	GATC	3 cut(s)	171, 626, 847
BstMAI	GTCTC	3 cut(s)	243, 296, 653
BstMBI	GATC	3 cut(s)	168, 623, 844
BstNI	CCWGG	3 cut(s)	117, 582, 1212
BstPAI	GACNNNNGTC	1 cut(s)	188
BstSCI	CCNGG	3 cut(s)	115, 580, 1210
BstSFI	CTRYAG	1 cut(s)	690
BstSLI	GKGCMC	1 cut(s)	1086
BstV1I	GCAGC	8 cut(s)	375, 494, 508, 616, 752, 873, 1057, 1071
BsuRI	GGCC	3 cut(s)	780, 1084, 1236
BtgI	CCRYGG	1 cut(s)	348
BtrI	CACGTC	1 cut(s)	223
BtsCI	GGATG	1 cut(s)	1115
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	4 cut(s)	48, 345, 399, 498
BveI	ACCTGC	1 cut(s)	433
Cac8I	GCNNGC	6 cut(s)	64, 540, 578, 710, 782, 786
CaiI	CAGNNNCTG	3 cut(s)	344, 401, 766
CciI	TCATGA	1 cut(s)	192
CfoI	GCGC	2 cut(s)	331, 1198
Cfr13I	GGNCC	2 cut(s)	1082, 1083
Csp6I	GTAC	2 cut(s)	422, 1266
CviAII	CATG	6 cut(s)	100, 193, 349, 553, 895, 987
CviQI	GTAC	2 cut(s)	422, 1266
DdeI	CTNAG	5 cut(s)	332, 408, 478, 713, 949
DpnI	GATC	3 cut(s)	170, 625, 846
DpnII	GATC	3 cut(s)	168, 623, 844
Eco130I	CCWWGG	1 cut(s)	348
Eco24I	GRGCYC	2 cut(s)	948, 1086
Eco32I	GATATC	2 cut(s)	94, 867
Eco57I	CTGAAG	1 cut(s)	1209
EcoNI	CCTNNNNNAGG	2 cut(s)	690, 915
EcoRI	GAATTC	1 cut(s)	435
EcoRII	CCWGG	3 cut(s)	115, 580, 1210
EcoRV	GATATC	2 cut(s)	94, 867
EcoT14I	CCWWGG	1 cut(s)	348
EcoT38I	GRGCYC	2 cut(s)	948, 1086
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	6 cut(s)	103, 196, 352, 556, 898, 990
FalI	AAGNNNNNCTT	2 cut(s)	560, 592
FaqI	GGGAC	3 cut(s)	196, 236, 602
FatI	CATG	6 cut(s)	99, 192, 348, 552, 894, 986
Fnu4HI	GCNGC	9 cut(s)	364, 483, 522, 605, 741, 887, 1011, 1046, 1060
FokI	GGATG	1 cut(s)	1122
FriOI	GRGCYC	2 cut(s)	948, 1086
Fsp4HI	GCNGC	9 cut(s)	364, 483, 522, 605, 741, 887, 1011, 1046, 1060
FspBI	CTAG	2 cut(s)	278, 440
GlaI	GCGC	2 cut(s)	330, 1197
GluI	GCNGC	9 cut(s)	364, 483, 522, 605, 741, 887, 1011, 1046, 1060
HaeII	RGCGCY	1 cut(s)	1199
HaeIII	GGCC	3 cut(s)	780, 1084, 1236
HapII	CCGG	1 cut(s)	656
HhaI	GCGC	2 cut(s)	331, 1198
Hin1II	CATG	6 cut(s)	103, 196, 352, 556, 898, 990
Hin6I	GCGC	2 cut(s)	329, 1196
HinP1I	GCGC	2 cut(s)	329, 1196
HindIII	AAGCTT	2 cut(s)	64, 786
HinfI	GANTC	3 cut(s)	196, 763, 1325
HpaII	CCGG	1 cut(s)	656
HphI	GGTGA	2 cut(s)	88, 645
Hpy188I	TCNGA	6 cut(s)	220, 409, 628, 849, 1189, 1263
Hpy188III	TCNNGA	6 cut(s)	122, 193, 613, 760, 805, 870
HpyAV	CCTTC	7 cut(s)	353, 535, 610, 673, 696, 763, 802
HpyCH4III	ACNGT	6 cut(s)	43, 187, 250, 340, 403, 877
HpyCH4IV	ACGT	2 cut(s)	222, 1331
HpyCH4V	TGCA	8 cut(s)	62, 428, 692, 784, 1045, 1067, 1230, 1241
HpyF3I	CTNAG	5 cut(s)	332, 408, 478, 713, 949
HpySE526I	ACGT	2 cut(s)	222, 1331
Hsp92II	CATG	6 cut(s)	103, 196, 352, 556, 898, 990
HspAI	GCGC	2 cut(s)	329, 1196
Kzo9I	GATC	3 cut(s)	168, 623, 844
LmnI	GCTCC	1 cut(s)	717
Lsp1109I	GCAGC	8 cut(s)	375, 494, 508, 616, 752, 873, 1057, 1071
LweI	GCATC	6 cut(s)	37, 375, 467, 539, 619, 1076
MaeI	CTAG	2 cut(s)	278, 440
MaeII	ACGT	2 cut(s)	222, 1331
MaeIII	GTNAC	3 cut(s)	340, 732, 1295
MalI	GATC	3 cut(s)	170, 625, 846
MboI	GATC	3 cut(s)	168, 623, 844
MboII	GAAGA	4 cut(s)	650, 653, 748, 1202
MfeI	CAATTG	2 cut(s)	744, 939
MhlI	GDGCHC	3 cut(s)	134, 948, 1086
MluCI	AATT	6 cut(s)	75, 204, 435, 744, 939, 1155
MlyI	GAGTC	2 cut(s)	190, 772
MroXI	GAANNNNTTC	1 cut(s)	877
MseI	TTAA	2 cut(s)	675, 1154
MslI	CAYNNNNRTG	3 cut(s)	466, 899, 1319
MspA1I	CMGCKG	1 cut(s)	886
MspI	CCGG	1 cut(s)	656
MspR9I	CCNGG	3 cut(s)	117, 582, 1212
MunI	CAATTG	2 cut(s)	744, 939
MvaI	CCWGG	3 cut(s)	117, 582, 1212
NcoI	CCATGG	1 cut(s)	348
NdeII	GATC	3 cut(s)	168, 623, 844
NlaIII	CATG	6 cut(s)	103, 196, 352, 556, 898, 990
NlaIV	GGNNCC	7 cut(s)	212, 475, 684, 874, 909, 1002, 1084
NmuCI	GTSAC	3 cut(s)	340, 732, 1295
PagI	TCATGA	1 cut(s)	192
PdmI	GAANNNNTTC	1 cut(s)	877
PfeI	GAWTC	1 cut(s)	1325
PflFI	GACNNNGTC	1 cut(s)	730
PflMI	CCANNNNNTGG	1 cut(s)	766
PkrI	GCNGC	9 cut(s)	365, 484, 523, 606, 742, 888, 1012, 1047, 1061
PleI	GAGTC	2 cut(s)	190, 771
PpsI	GAGTC	2 cut(s)	190, 771
Ppu21I	YACGTR	1 cut(s)	1332
PshAI	GACNNNNGTC	1 cut(s)	188
Psp6I	CCWGG	3 cut(s)	115, 580, 1210
PspGI	CCWGG	3 cut(s)	115, 580, 1210
PspN4I	GGNNCC	7 cut(s)	212, 475, 684, 874, 909, 1002, 1084
PspOMI	GGGCCC	1 cut(s)	1082
PspPI	GGNCC	2 cut(s)	1082, 1083
PstI	CTGCAG	1 cut(s)	694
PstNI	CAGNNNCTG	3 cut(s)	344, 401, 766
PsyI	GACNNNGTC	1 cut(s)	730
PvuII	CAGCTG	1 cut(s)	886
RsaI	GTAC	2 cut(s)	423, 1267
RsaNI	GTAC	2 cut(s)	422, 1266
RseI	CAYNNNNRTG	3 cut(s)	466, 899, 1319
SaqAI	TTAA	2 cut(s)	675, 1154
SatI	GCNGC	9 cut(s)	364, 483, 522, 605, 741, 887, 1011, 1046, 1060
Sau3AI	GATC	3 cut(s)	168, 623, 844
Sau96I	GGNCC	2 cut(s)	1082, 1083
SchI	GAGTC	2 cut(s)	190, 772
ScrFI	CCNGG	3 cut(s)	117, 582, 1212
SduI	GDGCHC	3 cut(s)	134, 948, 1086
SfaNI	GCATC	6 cut(s)	37, 375, 467, 539, 619, 1076
SfcI	CTRYAG	1 cut(s)	690
SmiMI	CAYNNNNRTG	3 cut(s)	466, 899, 1319
SmlI	CTYRAG	2 cut(s)	566, 1104
SmoI	CTYRAG	2 cut(s)	566, 1104
SpeI	ACTAGT	1 cut(s)	277
Sse9I	AATT	6 cut(s)	75, 204, 435, 744, 939, 1155
SsiI	CCGC	2 cut(s)	200, 1011
SspMI	CTAG	2 cut(s)	278, 440
StyD4I	CCNGG	3 cut(s)	115, 580, 1210
StyI	CCWWGG	1 cut(s)	348
TaaI	ACNGT	6 cut(s)	43, 187, 250, 340, 403, 877
TaiI	ACGT	2 cut(s)	225, 1334
TasI	AATT	6 cut(s)	75, 204, 435, 744, 939, 1155
TatI	WGTACW	1 cut(s)	1265
TauI	GCSGC	1 cut(s)	1013
TfiI	GAWTC	1 cut(s)	1325
Tru1I	TTAA	2 cut(s)	675, 1154
Tru9I	TTAA	2 cut(s)	675, 1154
TscAI	CASTG	4 cut(s)	48, 345, 406, 505
TseFI	GTSAC	3 cut(s)	340, 732, 1295
TseI	GCWGC	8 cut(s)	363, 482, 521, 604, 740, 886, 1045, 1059
Tsp45I	GTSAC	3 cut(s)	340, 732, 1295
TspDTI	ATGAA	1 cut(s)	883
TspRI	CASTG	4 cut(s)	48, 345, 406, 505
Tth111I	GACNNNGTC	1 cut(s)	730
Van91I	CCANNNNNTGG	1 cut(s)	766
XagI	CCTNNNNNAGG	2 cut(s)	690, 915
XapI	RAATTY	1 cut(s)	435
XmnI	GAANNNNTTC	1 cut(s)	877
XspI	CTAG	2 cut(s)	278, 440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.