Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00971

Orthogroup ID

OG0001419

Physical Location & Seq

Genomic Coordinates Forward (+)

317 .. 2636

Gene Structure 2320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G021110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGACATGCGAAGGCAGTGTCAACTGCCTCGCCCTCGCTTATGTGGCAGACAACATTTCAGAGAGAGAGAGAGTATCTGCATTTGGACTTCTATCTGGGTTTTTCTCCGCATCATTTGTATGTGGAACTTTAGCAGCTCGTTTCCTCCCCACTTCGTTAACATTTCAGGTTGCCGCCTTAGTATCAATGCTGGCAGCTGTTTACATGAGAATTTTTCTCGAGGAAATTAGGCCATCAGATCATGGGGATAGTACTTTGAGCCAGCCTATCTTGAAGGGATTAGAACCAGTACTAGAGCGAATCACAGATGACGATTACTCTCCGAAGACGAAAATTGAATTTAAGAAGATCCCATCTGTTGGGGATCTTATTAGCTTACTCAGGAGTAGTAAGACCCTGTCACAAGCTGGTATTATTATCTTCTTTCAGAGCCTAGCAGAAGGTGGCATGCAAGCTTCGGTCCTGTATTTCCTTAAGGCTCGTTTTCAGTTCGACAAAAATCAGTTTGCTGATATAATGCTGATTATGGGGATATCAGGAGCCATAACACAGATGATTTTCATGCCCATGATGGCACCTAAAATCGGAGAGGAAAAGATGCTGTCAATTGGGCTCTCACTCAACTGTATCAGTATGTTTCTAAACAGTATAGCGTGGTCACCTTGGGTTCCTTATGCAGCTACTGTGTTTCTTCTTGCCTTACTAGCACAACCAACTATACGCAGCATTGCCTCAAAACAAGTTGGACCAAATGAGCAGGGAAAGGCTCAAGGATGCATTTCAGGCATAAGTTCCTTTGCCAACATTGTTGCTCCATTAGTTTTCAGTCCTTTAACAGCTTTATTTTTGTCTGAAGATGCACCGTTCAATTTCCCTGGCTTCAGTATTATGTGCCTTGGACTTGCAACGATCATTGCCTTGATTCAGAGTACAATGATAAGGGCTTCTCCTCCTATTTCAAGTCACAATTTAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

325

Amino Acids

35.11

Weight (kDa)

6.15

Isoelectric Point (pI)

42.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	3 - 272	9.5e-19	Major Facilitator Superfamily
MFS_1	PF07690	138 - 307	3.2e-09	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16970 AT2G16970 AT2G16970 AT2G16970 AT2G16970 AT2G16970 AT2G16970 AT2G16970 AT2G16980 AT2G16980 AT2G16980 AT2G16980 AT2G16980 AT2G16980 AT2G16990 AT2G16990 AT2G16990 AT2G16990 AT2G16990 AT2G16990 AT2G16990 AT2G16990
fragaria_vesca	FvH4_2g15722 FvH4_2g15730 FvH4_2g15730 FvH4_2g15730 FvH4_2g15730 FvH4_2g15730
malus_domestica	MD05G1126300.v1.1 MD10G1129100.v1.1
prunus_persica	Prupe.8G169700_v2.0.a1 Prupe.8G169700_v2.0.a1 Prupe.8G169700_v2.0.a1
pyrus_communis	pycom05g12210 pycom10g11070
rosa_chinensis	RchiOBHm_Chr6g0279031 RchiOBHm_Chr6g0279041
rosa_laevigata	RLG00000013171
rosa_multiflora	Rmu_sc0002080.1_g000008 Rmu_sc0002080.1_g000013
rosa_roxburghii	Rroxscaffold_7G00189190
rosa_rugosa	Rorug06G0121300 Rorug06G0121400.1 Rorug06G0121500 Rorug06G0121600
rosa_samantha	Rh6AG230600 Rh6BG235400 Rh6CG237400 Rh6DG229200
rosa_wichuraiana	Rw0G017030 Rw0G021110 Rw6G020180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	574
AccB7I	CCANNNNNTGG	1 cut(s)	359
AciI	CCGC	2 cut(s)	108, 174
AclWI	GGATC	2 cut(s)	343, 372
AcsI	RAATTY	2 cut(s)	210, 338
AcuI	CTGAAG	2 cut(s)	865, 873
AfaI	GTAC	3 cut(s)	253, 291, 931
AfiI	CCNNNNNNNGG	2 cut(s)	359, 584
AflII	CTTAAG	1 cut(s)	473
AgsI	TTSAA	4 cut(s)	274, 338, 868, 960
AjnI	CCWGG	1 cut(s)	874
AluBI	AGCT	7 cut(s)	137, 197, 375, 407, 455, 680, 839
AluI	AGCT	7 cut(s)	137, 197, 375, 407, 455, 680, 839
AlwI	GGATC	2 cut(s)	343, 372
AlwNI	CAGNNNCTG	1 cut(s)	683
Ama87I	CYCGRG	1 cut(s)	218
AoxI	GGCC	1 cut(s)	230
ApeKI	GCWGC	4 cut(s)	134, 194, 677, 723
ApoI	RAATTY	2 cut(s)	210, 338
ArsI	GACNNNNNNTTYG	1 cut(s)	35
AspS9I	GGNCC	2 cut(s)	460, 746
AsuHPI	GGTGA	1 cut(s)	651
AvaI	CYCGRG	1 cut(s)	218
AvaII	GGWCC	2 cut(s)	460, 746
BanI	GGYRCC	1 cut(s)	574
BanII	GRGCYC	1 cut(s)	615
BbsI	GAAGAC	1 cut(s)	332
BbvI	GCAGC	4 cut(s)	146, 206, 689, 735
BccI	CCATC	3 cut(s)	241, 361, 565
BciT130I	CCWGG	1 cut(s)	876
BfaI	CTAG	4 cut(s)	293, 434, 704, 976
BfrI	CTTAAG	1 cut(s)	473
BisI	GCNGC	5 cut(s)	135, 174, 195, 678, 724
BlsI	GCNGC	5 cut(s)	136, 175, 196, 679, 725
BmcAI	AGTACT	2 cut(s)	253, 291
Bme1390I	CCNGG	1 cut(s)	876
Bme18I	GGWCC	2 cut(s)	460, 746
BmeT110I	CYCGRG	1 cut(s)	218
BmgT120I	GGNCC	2 cut(s)	460, 746
BmiI	GGNNCC	3 cut(s)	541, 576, 669
BmrFI	CCNGG	1 cut(s)	876
BmsI	GCATC	4 cut(s)	119, 588, 764, 847
BpiI	GAAGAC	1 cut(s)	332
BpuEI	CTTGAG	1 cut(s)	753
BsaJI	CCNNGG	3 cut(s)	662, 874, 895
Bsc4I	CCNNNNNNNGG	2 cut(s)	359, 584
Bse1I	ACTGG	1 cut(s)	287
Bse3DI	GCAATG	2 cut(s)	726, 912
BseBI	CCWGG	1 cut(s)	876
BseDI	CCNNGG	3 cut(s)	662, 874, 895
BseGI	GGATG	1 cut(s)	779
BseLI	CCNNNNNNNGG	2 cut(s)	359, 584
BseMI	GCAATG	2 cut(s)	726, 912
BseMII	CTCAG	1 cut(s)	394
BseNI	ACTGG	1 cut(s)	287
BseRI	GAGGAG	1 cut(s)	939
BseXI	GCAGC	4 cut(s)	146, 206, 689, 735
BshFI	GGCC	1 cut(s)	232
BshNI	GGYRCC	1 cut(s)	574
BsiHKCI	CYCGRG	1 cut(s)	218
BslI	CCNNNNNNNGG	2 cut(s)	359, 584
BsnI	GGCC	1 cut(s)	232
BsoBI	CYCGRG	1 cut(s)	218
Bsp1286I	GDGCHC	1 cut(s)	615
Bsp143I	GATC	4 cut(s)	238, 348, 364, 909
BspACI	CCGC	2 cut(s)	108, 174
BspANI	GGCC	1 cut(s)	232
BspCNI	CTCAG	1 cut(s)	393
BspLI	GGNNCC	3 cut(s)	541, 576, 669
BspPI	GGATC	2 cut(s)	343, 372
BspT107I	GGYRCC	1 cut(s)	574
BspTI	CTTAAG	1 cut(s)	473
BsrDI	GCAATG	2 cut(s)	726, 912
BsrI	ACTGG	1 cut(s)	287
BssECI	CCNNGG	3 cut(s)	662, 874, 895
BssMI	GATC	4 cut(s)	238, 348, 364, 909
BssT1I	CCWWGG	2 cut(s)	662, 895
Bst2UI	CCWGG	1 cut(s)	876
Bst4CI	ACNGT	4 cut(s)	626, 647, 685, 864
BstAFI	CTTAAG	1 cut(s)	473
BstC8I	GCNNGC	4 cut(s)	192, 263, 449, 453
BstDEI	CTNAG	2 cut(s)	178, 380
BstEII	GGTNACC	1 cut(s)	657
BstF5I	GGATG	1 cut(s)	779
BstKTI	GATC	4 cut(s)	241, 351, 367, 912
BstMBI	GATC	4 cut(s)	238, 348, 364, 909
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 704, 783
BstNI	CCWGG	1 cut(s)	876
BstNSI	RCATGY	2 cut(s)	9, 451
BstPI	GGTNACC	1 cut(s)	657
BstSCI	CCNGG	1 cut(s)	874
BstV1I	GCAGC	4 cut(s)	146, 206, 689, 735
BstV2I	GAAGAC	1 cut(s)	332
BstX2I	RGATCY	2 cut(s)	348, 364
BstYI	RGATCY	2 cut(s)	348, 364
BsuRI	GGCC	1 cut(s)	232
BtsCI	GGATG	1 cut(s)	779
BtsI	GCAGTG	1 cut(s)	22
BtsIMutI	CAGTG	1 cut(s)	22
Cac8I	GCNNGC	4 cut(s)	192, 263, 449, 453
CaiI	CAGNNNCTG	1 cut(s)	683
Cfr13I	GGNCC	2 cut(s)	460, 746
Csp6I	GTAC	3 cut(s)	252, 290, 930
CviAII	CATG	6 cut(s)	6, 205, 242, 448, 562, 568
CviQI	GTAC	3 cut(s)	252, 290, 930
DdeI	CTNAG	2 cut(s)	178, 380
DpnI	GATC	4 cut(s)	240, 350, 366, 911
DpnII	GATC	4 cut(s)	238, 348, 364, 909
Eco130I	CCWWGG	2 cut(s)	662, 895
Eco24I	GRGCYC	1 cut(s)	615
Eco32I	GATATC	1 cut(s)	534
Eco47I	GGWCC	2 cut(s)	460, 746
Eco57I	CTGAAG	2 cut(s)	865, 873
Eco88I	CYCGRG	1 cut(s)	218
Eco91I	GGTNACC	1 cut(s)	657
EcoO65I	GGTNACC	1 cut(s)	657
EcoRII	CCWGG	1 cut(s)	874
EcoRV	GATATC	1 cut(s)	534
EcoT14I	CCWWGG	2 cut(s)	662, 895
EcoT22I	ATGCAT	1 cut(s)	779
EcoT38I	GRGCYC	1 cut(s)	615
ErhI	CCWWGG	2 cut(s)	662, 895
FaeI	CATG	6 cut(s)	9, 208, 245, 451, 565, 571
FatI	CATG	6 cut(s)	5, 204, 241, 447, 561, 567
Fnu4HI	GCNGC	5 cut(s)	135, 174, 195, 678, 724
FokI	GGATG	1 cut(s)	786
FriOI	GRGCYC	1 cut(s)	615
Fsp4HI	GCNGC	5 cut(s)	135, 174, 195, 678, 724
FspBI	CTAG	4 cut(s)	293, 434, 704, 976
GluI	GCNGC	5 cut(s)	135, 174, 195, 678, 724
HaeIII	GGCC	1 cut(s)	232
Hin1II	CATG	6 cut(s)	9, 208, 245, 451, 565, 571
HincII	GTYRAC	2 cut(s)	22, 159
HindII	GTYRAC	2 cut(s)	22, 159
HindIII	AAGCTT	1 cut(s)	453
HinfI	GANTC	2 cut(s)	300, 922
HpaI	GTTAAC	1 cut(s)	159
HphI	GGTGA	1 cut(s)	651
Hpy166II	GTNNAC	3 cut(s)	22, 159, 202
Hpy188I	TCNGA	7 cut(s)	61, 238, 324, 429, 587, 853, 927
Hpy188III	TCNNGA	4 cut(s)	218, 271, 382, 537
Hpy8I	GTNNAC	3 cut(s)	22, 159, 202
HpyAV	CCTTC	3 cut(s)	5, 268, 434
HpyCH4III	ACNGT	4 cut(s)	626, 647, 685, 864
HpyCH4V	TGCA	6 cut(s)	80, 451, 677, 777, 860, 905
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 704, 783
HpyF3I	CTNAG	2 cut(s)	178, 380
Hsp92II	CATG	6 cut(s)	9, 208, 245, 451, 565, 571
KspAI	GTTAAC	1 cut(s)	159
Kzo9I	GATC	4 cut(s)	238, 348, 364, 909
LmnI	GCTCC	2 cut(s)	539, 817
Lsp1109I	GCAGC	4 cut(s)	146, 206, 689, 735
LweI	GCATC	4 cut(s)	119, 588, 764, 847
MaeI	CTAG	4 cut(s)	293, 434, 704, 976
MaeIII	GTNAC	3 cut(s)	399, 657, 962
MalI	GATC	4 cut(s)	240, 350, 366, 911
MboI	GATC	4 cut(s)	238, 348, 364, 909
MboII	GAAGA	5 cut(s)	337, 358, 412, 683, 866
MfeI	CAATTG	1 cut(s)	606
MflI	RGATCY	2 cut(s)	348, 364
MhlI	GDGCHC	1 cut(s)	615
MluCI	AATT	7 cut(s)	210, 225, 333, 338, 606, 868, 967
MmeI	TCCRAC	1 cut(s)	724
MnlI	CCTC	7 cut(s)	38, 44, 155, 214, 583, 742, 960
Mph1103I	ATGCAT	1 cut(s)	779
MseI	TTAA	4 cut(s)	158, 342, 474, 833
MslI	CAYNNNNRTG	2 cut(s)	118, 566
MspA1I	CMGCKG	1 cut(s)	197
MspCI	CTTAAG	1 cut(s)	473
MspR9I	CCNGG	1 cut(s)	876
MunI	CAATTG	1 cut(s)	606
MvaI	CCWGG	1 cut(s)	876
MwoI	GCNNNNNNNGC	3 cut(s)	44, 704, 783
NdeII	GATC	4 cut(s)	238, 348, 364, 909
NlaIII	CATG	6 cut(s)	9, 208, 245, 451, 565, 571
NlaIV	GGNNCC	3 cut(s)	541, 576, 669
NmuCI	GTSAC	3 cut(s)	399, 657, 962
NsiI	ATGCAT	1 cut(s)	779
NspI	RCATGY	2 cut(s)	9, 451
PaeI	GCATGC	1 cut(s)	451
PaeR7I	CTCGAG	1 cut(s)	218
PfeI	GAWTC	2 cut(s)	300, 922
PflFI	GACNNNGTC	1 cut(s)	397
PflMI	CCANNNNNTGG	1 cut(s)	359
PkrI	GCNGC	5 cut(s)	136, 175, 196, 679, 725
Psp6I	CCWGG	1 cut(s)	874
PspEI	GGTNACC	1 cut(s)	657
PspGI	CCWGG	1 cut(s)	874
PspN4I	GGNNCC	3 cut(s)	541, 576, 669
PspPI	GGNCC	2 cut(s)	460, 746
PstNI	CAGNNNCTG	1 cut(s)	683
PsuI	RGATCY	2 cut(s)	348, 364
PsyI	GACNNNGTC	1 cut(s)	397
PvuII	CAGCTG	1 cut(s)	197
RsaI	GTAC	3 cut(s)	253, 291, 931
RsaNI	GTAC	3 cut(s)	252, 290, 930
RseI	CAYNNNNRTG	2 cut(s)	118, 566
SaqAI	TTAA	4 cut(s)	158, 342, 474, 833
SatI	GCNGC	5 cut(s)	135, 174, 195, 678, 724
Sau3AI	GATC	4 cut(s)	238, 348, 364, 909
Sau96I	GGNCC	2 cut(s)	460, 746
ScaI	AGTACT	2 cut(s)	253, 291
ScrFI	CCNGG	1 cut(s)	876
SduI	GDGCHC	1 cut(s)	615
SfaNI	GCATC	4 cut(s)	119, 588, 764, 847
Sfr274I	CTCGAG	1 cut(s)	218
SinI	GGWCC	2 cut(s)	460, 746
SlaI	CTCGAG	1 cut(s)	218
SmiMI	CAYNNNNRTG	2 cut(s)	118, 566
SmlI	CTYRAG	3 cut(s)	218, 473, 768
SmoI	CTYRAG	3 cut(s)	218, 473, 768
SphI	GCATGC	1 cut(s)	451
Sse9I	AATT	7 cut(s)	210, 225, 333, 338, 606, 868, 967
SsiI	CCGC	2 cut(s)	108, 174
SspMI	CTAG	4 cut(s)	293, 434, 704, 976
StyD4I	CCNGG	1 cut(s)	874
StyI	CCWWGG	2 cut(s)	662, 895
TaaI	ACNGT	4 cut(s)	626, 647, 685, 864
TaqI	TCGA	2 cut(s)	219, 492
TaqII	GACCGA	1 cut(s)	448
TasI	AATT	7 cut(s)	210, 225, 333, 338, 606, 868, 967
TatI	WGTACW	3 cut(s)	251, 289, 929
TauI	GCSGC	1 cut(s)	176
TfiI	GAWTC	2 cut(s)	300, 922
Tru1I	TTAA	4 cut(s)	158, 342, 474, 833
Tru9I	TTAA	4 cut(s)	158, 342, 474, 833
TscAI	CASTG	1 cut(s)	22
TseFI	GTSAC	3 cut(s)	399, 657, 962
TseI	GCWGC	4 cut(s)	134, 194, 677, 723
Tsp45I	GTSAC	3 cut(s)	399, 657, 962
TspDTI	ATGAA	1 cut(s)	550
TspRI	CASTG	1 cut(s)	22
Tth111I	GACNNNGTC	1 cut(s)	397
Van91I	CCANNNNNTGG	1 cut(s)	359
Vha464I	CTTAAG	1 cut(s)	473
VpaK11BI	GGWCC	2 cut(s)	460, 746
XapI	RAATTY	2 cut(s)	210, 338
XceI	RCATGY	2 cut(s)	9, 451
XhoI	CTCGAG	1 cut(s)	218
XspI	CTAG	4 cut(s)	293, 434, 704, 976
ZrmI	AGTACT	2 cut(s)	253, 291
Zsp2I	ATGCAT	1 cut(s)	779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.